Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02155

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02145 and CSW01_02150 are separated by 80 nucleotidesCSW01_02150 and CSW01_02155 are separated by 25 nucleotidesCSW01_02155 and CSW01_02160 are separated by 36 nucleotidesCSW01_02160 and CSW01_02165 overlap by 53 nucleotides CSW01_02145: CSW01_02145 - MSHA biogenesis protein MshF, at 433,077 to 433,529 _02145 CSW01_02150: CSW01_02150 - MSHA biogenesis protein MshB, at 433,610 to 434,164 _02150 CSW01_02155: CSW01_02155 - MSHA pilin protein MshA, at 434,190 to 434,726 _02155 CSW01_02160: CSW01_02160 - MSHA pilin protein MshC, at 434,763 to 435,251 _02160 CSW01_02165: CSW01_02165 - MSHA pilin protein MshD, at 435,199 to 435,810 _02165 Position (kb) 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.191 kb on + strand, within CSW01_02145at 433.199 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.282 kb on - strand, within CSW01_02145at 433.367 kb on + strand, within CSW01_02145at 433.372 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.413 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.464 kb on + strand, within CSW01_02145at 433.549 kb on + strandat 433.734 kb on + strand, within CSW01_02150at 433.863 kb on + strand, within CSW01_02150at 433.951 kb on - strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.960 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 434.067 kb on + strand, within CSW01_02150at 434.090 kb on - strand, within CSW01_02150at 434.128 kb on + strandat 434.136 kb on - strandat 434.146 kb on - strandat 434.154 kb on + strandat 434.154 kb on - strandat 434.155 kb on - strandat 434.214 kb on + strandat 434.267 kb on + strand, within CSW01_02155at 434.302 kb on - strand, within CSW01_02155at 434.405 kb on - strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.433 kb on + strand, within CSW01_02155at 434.520 kb on - strand, within CSW01_02155at 434.526 kb on + strand, within CSW01_02155at 434.636 kb on + strand, within CSW01_02155at 434.644 kb on - strand, within CSW01_02155at 434.684 kb on + strandat 434.684 kb on + strandat 434.684 kb on + strandat 434.692 kb on - strandat 434.692 kb on - strandat 434.708 kb on + strandat 434.708 kb on + strandat 434.781 kb on + strandat 434.782 kb on + strandat 434.782 kb on + strandat 434.789 kb on - strandat 434.790 kb on - strandat 434.831 kb on - strand, within CSW01_02160at 434.861 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.922 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.947 kb on - strand, within CSW01_02160at 435.006 kb on + strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.019 kb on - strand, within CSW01_02160at 435.051 kb on - strand, within CSW01_02160at 435.082 kb on - strand, within CSW01_02160at 435.132 kb on + strand, within CSW01_02160at 435.133 kb on + strand, within CSW01_02160at 435.155 kb on - strand, within CSW01_02160at 435.165 kb on - strand, within CSW01_02160at 435.187 kb on + strand, within CSW01_02160at 435.203 kb on + strandat 435.205 kb on - strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.237 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.279 kb on - strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.322 kb on - strand, within CSW01_02165at 435.353 kb on + strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.365 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.405 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.460 kb on + strand, within CSW01_02165at 435.462 kb on - strand, within CSW01_02165at 435.468 kb on - strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.529 kb on - strand, within CSW01_02165at 435.593 kb on - strand, within CSW01_02165at 435.604 kb on - strand, within CSW01_02165at 435.719 kb on - strand, within CSW01_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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433,191 + CSW01_02145 0.25 +0.9
433,199 - CSW01_02145 0.27 +0.8
433,234 - CSW01_02145 0.35 +0.2
433,234 - CSW01_02145 0.35 +0.2
433,264 + CSW01_02145 0.41 +0.9
433,264 + CSW01_02145 0.41 +0.0
433,282 - CSW01_02145 0.45 -0.1
433,367 + CSW01_02145 0.64 -0.3
433,372 + CSW01_02145 0.65 +0.2
433,386 + CSW01_02145 0.68 +0.7
433,386 + CSW01_02145 0.68 +1.2
433,394 - CSW01_02145 0.70 -0.1
433,394 - CSW01_02145 0.70 +0.5
433,394 - CSW01_02145 0.70 +0.3
433,413 + CSW01_02145 0.74 -0.3
433,456 + CSW01_02145 0.84 -1.7
433,456 + CSW01_02145 0.84 +0.2
433,456 + CSW01_02145 0.84 +0.5
433,464 + CSW01_02145 0.85 -0.2
433,549 + +0.1
433,734 + CSW01_02150 0.22 +0.3
433,863 + CSW01_02150 0.46 +0.7
433,951 - CSW01_02150 0.61 +1.1
433,952 + CSW01_02150 0.62 -1.2
433,952 + CSW01_02150 0.62 +0.2
433,952 + CSW01_02150 0.62 +0.0
433,960 - CSW01_02150 0.63 +0.9
433,965 - CSW01_02150 0.64 +1.6
433,965 - CSW01_02150 0.64 +0.7
433,965 - CSW01_02150 0.64 +1.2
434,067 + CSW01_02150 0.82 +0.6
434,090 - CSW01_02150 0.86 +0.0
434,128 + +0.2
434,136 - +1.0
434,146 - +0.6
434,154 + +1.1
434,154 - +0.9
434,155 - +0.5
434,214 + +1.3
434,267 + CSW01_02155 0.14 +0.5
434,302 - CSW01_02155 0.21 +0.7
434,405 - CSW01_02155 0.40 -0.3
434,412 + CSW01_02155 0.41 +0.5
434,412 + CSW01_02155 0.41 +1.1
434,433 + CSW01_02155 0.45 +0.4
434,520 - CSW01_02155 0.61 +0.8
434,526 + CSW01_02155 0.63 +1.0
434,636 + CSW01_02155 0.83 +0.6
434,644 - CSW01_02155 0.85 +1.1
434,684 + +1.4
434,684 + +0.6
434,684 + +0.5
434,692 - +0.8
434,692 - -0.5
434,708 + +0.9
434,708 + +0.5
434,781 + +1.0
434,782 + +0.5
434,782 + +1.0
434,789 - +0.7
434,790 - +1.0
434,831 - CSW01_02160 0.14 +0.6
434,861 + CSW01_02160 0.20 +0.8
434,919 + CSW01_02160 0.32 -0.1
434,919 + CSW01_02160 0.32 +0.6
434,919 + CSW01_02160 0.32 +0.7
434,922 - CSW01_02160 0.33 +1.3
434,927 - CSW01_02160 0.34 +0.7
434,927 - CSW01_02160 0.34 +0.7
434,927 - CSW01_02160 0.34 +0.6
434,927 - CSW01_02160 0.34 +0.9
434,927 - CSW01_02160 0.34 +0.7
434,947 - CSW01_02160 0.38 +1.3
435,006 + CSW01_02160 0.50 +1.6
435,014 - CSW01_02160 0.51 +1.2
435,014 - CSW01_02160 0.51 +0.4
435,014 - CSW01_02160 0.51 +0.9
435,019 - CSW01_02160 0.52 +0.4
435,051 - CSW01_02160 0.59 +0.5
435,082 - CSW01_02160 0.65 +1.0
435,132 + CSW01_02160 0.75 +1.6
435,133 + CSW01_02160 0.76 -0.8
435,155 - CSW01_02160 0.80 +2.2
435,165 - CSW01_02160 0.82 +0.3
435,187 + CSW01_02160 0.87 +0.4
435,203 + +0.3
435,205 - +1.0
435,231 + +1.2
435,231 + +0.8
435,231 + +0.8
435,237 + -0.0
435,239 - -0.1
435,239 - +1.2
435,239 - +0.6
435,239 - +2.1
435,239 - +0.4
435,239 - +0.7
435,279 - CSW01_02165 0.13 +0.6
435,314 + CSW01_02165 0.19 +0.6
435,314 + CSW01_02165 0.19 +1.6
435,314 + CSW01_02165 0.19 +1.2
435,314 + CSW01_02165 0.19 +0.9
435,314 + CSW01_02165 0.19 +0.9
435,314 + CSW01_02165 0.19 +0.4
435,322 - CSW01_02165 0.20 +0.7
435,353 + CSW01_02165 0.25 +0.3
435,361 - CSW01_02165 0.26 +0.5
435,361 - CSW01_02165 0.26 -3.3
435,365 + CSW01_02165 0.27 +0.7
435,397 + CSW01_02165 0.32 +0.5
435,397 + CSW01_02165 0.32 +0.9
435,405 - CSW01_02165 0.34 -0.2
435,415 - CSW01_02165 0.35 +0.4
435,415 - CSW01_02165 0.35 +1.0
435,424 + CSW01_02165 0.37 +0.9
435,424 + CSW01_02165 0.37 +0.5
435,460 + CSW01_02165 0.43 +1.3
435,462 - CSW01_02165 0.43 +2.7
435,468 - CSW01_02165 0.44 +0.4
435,500 + CSW01_02165 0.49 +0.0
435,500 + CSW01_02165 0.49 +1.3
435,508 - CSW01_02165 0.50 +1.8
435,508 - CSW01_02165 0.50 +0.1
435,508 - CSW01_02165 0.50 +0.5
435,529 - CSW01_02165 0.54 +0.7
435,593 - CSW01_02165 0.64 +0.6
435,604 - CSW01_02165 0.66 +0.7
435,719 - CSW01_02165 0.85 +0.8

Or see this region's nucleotide sequence