Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01970

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01965 and CSW01_01970 are separated by 202 nucleotidesCSW01_01970 and CSW01_01975 are separated by 116 nucleotidesCSW01_01975 and CSW01_01980 are separated by 9 nucleotides CSW01_01965: CSW01_01965 - glucose-6-phosphate isomerase, at 388,627 to 390,279 _01965 CSW01_01970: CSW01_01970 - MBL fold metallo-hydrolase, at 390,482 to 391,660 _01970 CSW01_01975: CSW01_01975 - chemotaxis protein CheX, at 391,777 to 392,238 _01975 CSW01_01980: CSW01_01980 - transcriptional regulator Zur, at 392,248 to 392,715 _01980 Position (kb) 390 391 392Strain fitness (log2 ratio) -1 0 1 2at 389.754 kb on + strand, within CSW01_01965at 390.015 kb on + strand, within CSW01_01965at 390.083 kb on - strand, within CSW01_01965at 390.192 kb on + strandat 390.249 kb on + strandat 390.308 kb on + strandat 390.308 kb on + strandat 390.308 kb on + strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.316 kb on - strandat 390.393 kb on - strandat 390.454 kb on + strandat 390.454 kb on + strandat 390.463 kb on + strandat 390.477 kb on - strandat 390.526 kb on - strandat 390.526 kb on - strandat 390.553 kb on + strandat 390.556 kb on - strandat 390.556 kb on - strandat 390.574 kb on - strandat 390.591 kb on - strandat 390.601 kb on - strand, within CSW01_01970at 390.614 kb on + strand, within CSW01_01970at 390.629 kb on - strand, within CSW01_01970at 390.665 kb on + strand, within CSW01_01970at 390.665 kb on + strand, within CSW01_01970at 390.665 kb on + strand, within CSW01_01970at 390.673 kb on - strand, within CSW01_01970at 390.694 kb on + strand, within CSW01_01970at 390.707 kb on - strand, within CSW01_01970at 390.772 kb on + strand, within CSW01_01970at 390.794 kb on - strand, within CSW01_01970at 390.812 kb on + strand, within CSW01_01970at 390.813 kb on + strand, within CSW01_01970at 390.829 kb on - strand, within CSW01_01970at 390.853 kb on + strand, within CSW01_01970at 390.861 kb on - strand, within CSW01_01970at 390.960 kb on + strand, within CSW01_01970at 390.960 kb on + strand, within CSW01_01970at 390.968 kb on - strand, within CSW01_01970at 390.970 kb on + strand, within CSW01_01970at 390.970 kb on + strand, within CSW01_01970at 390.970 kb on + strand, within CSW01_01970at 390.970 kb on + strand, within CSW01_01970at 390.978 kb on - strand, within CSW01_01970at 390.978 kb on - strand, within CSW01_01970at 390.978 kb on - strand, within CSW01_01970at 390.978 kb on - strand, within CSW01_01970at 390.978 kb on - strand, within CSW01_01970at 390.982 kb on + strand, within CSW01_01970at 390.982 kb on + strand, within CSW01_01970at 390.990 kb on - strand, within CSW01_01970at 391.005 kb on + strand, within CSW01_01970at 391.011 kb on + strand, within CSW01_01970at 391.013 kb on - strand, within CSW01_01970at 391.029 kb on - strand, within CSW01_01970at 391.031 kb on - strand, within CSW01_01970at 391.051 kb on + strand, within CSW01_01970at 391.172 kb on + strand, within CSW01_01970at 391.172 kb on + strand, within CSW01_01970at 391.270 kb on - strand, within CSW01_01970at 391.283 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.293 kb on + strand, within CSW01_01970at 391.301 kb on - strand, within CSW01_01970at 391.301 kb on - strand, within CSW01_01970at 391.301 kb on - strand, within CSW01_01970at 391.321 kb on + strand, within CSW01_01970at 391.327 kb on + strand, within CSW01_01970at 391.327 kb on + strand, within CSW01_01970at 391.329 kb on - strand, within CSW01_01970at 391.373 kb on + strand, within CSW01_01970at 391.373 kb on + strand, within CSW01_01970at 391.373 kb on + strand, within CSW01_01970at 391.373 kb on + strand, within CSW01_01970at 391.373 kb on + strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.381 kb on - strand, within CSW01_01970at 391.435 kb on - strand, within CSW01_01970at 391.447 kb on + strand, within CSW01_01970at 391.482 kb on - strand, within CSW01_01970at 391.485 kb on + strand, within CSW01_01970at 391.485 kb on + strand, within CSW01_01970at 391.493 kb on - strand, within CSW01_01970at 391.495 kb on + strand, within CSW01_01970at 391.503 kb on - strand, within CSW01_01970at 391.520 kb on - strand, within CSW01_01970at 391.520 kb on - strand, within CSW01_01970at 391.523 kb on + strand, within CSW01_01970at 391.529 kb on + strand, within CSW01_01970at 391.529 kb on + strand, within CSW01_01970at 391.549 kb on - strandat 391.551 kb on + strandat 391.564 kb on - strandat 391.591 kb on + strandat 391.591 kb on + strandat 391.683 kb on - strandat 391.779 kb on + strandat 391.815 kb on - strandat 391.954 kb on - strand, within CSW01_01975at 392.001 kb on - strand, within CSW01_01975at 392.010 kb on - strand, within CSW01_01975at 392.052 kb on + strand, within CSW01_01975at 392.052 kb on + strand, within CSW01_01975at 392.052 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.067 kb on + strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.101 kb on + strand, within CSW01_01975at 392.101 kb on + strand, within CSW01_01975at 392.109 kb on - strand, within CSW01_01975at 392.109 kb on - strand, within CSW01_01975at 392.248 kb on - strandat 392.283 kb on + strandat 392.309 kb on + strand, within CSW01_01980at 392.327 kb on - strand, within CSW01_01980at 392.329 kb on + strand, within CSW01_01980at 392.358 kb on + strand, within CSW01_01980at 392.390 kb on + strand, within CSW01_01980at 392.400 kb on + strand, within CSW01_01980at 392.408 kb on - strand, within CSW01_01980at 392.417 kb on + strand, within CSW01_01980at 392.423 kb on - strand, within CSW01_01980at 392.425 kb on + strand, within CSW01_01980at 392.433 kb on - strand, within CSW01_01980at 392.462 kb on - strand, within CSW01_01980at 392.524 kb on - strand, within CSW01_01980at 392.528 kb on + strand, within CSW01_01980at 392.528 kb on + strand, within CSW01_01980at 392.536 kb on - strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.591 kb on - strand, within CSW01_01980at 392.593 kb on - strand, within CSW01_01980at 392.603 kb on + strand, within CSW01_01980at 392.624 kb on + strand, within CSW01_01980at 392.624 kb on + strand, within CSW01_01980

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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389,754 + CSW01_01965 0.68 -1.6
390,015 + CSW01_01965 0.84 +0.4
390,083 - CSW01_01965 0.88 -1.2
390,192 + -1.2
390,249 + -0.3
390,308 + +0.3
390,308 + -0.0
390,308 + +0.3
390,316 - -0.2
390,316 - +0.0
390,316 - +0.8
390,316 - -0.2
390,316 - -1.2
390,316 - -1.4
390,316 - +2.0
390,316 - -0.4
390,316 - -0.3
390,393 - +0.2
390,454 + +0.1
390,454 + -0.1
390,463 + +1.2
390,477 - +2.7
390,526 - +1.0
390,526 - +1.1
390,553 + -0.1
390,556 - -0.9
390,556 - -1.2
390,574 - +0.2
390,591 - -0.1
390,601 - CSW01_01970 0.10 +0.4
390,614 + CSW01_01970 0.11 +0.5
390,629 - CSW01_01970 0.12 +0.4
390,665 + CSW01_01970 0.16 -0.3
390,665 + CSW01_01970 0.16 +0.4
390,665 + CSW01_01970 0.16 -1.5
390,673 - CSW01_01970 0.16 +1.1
390,694 + CSW01_01970 0.18 -0.2
390,707 - CSW01_01970 0.19 +0.2
390,772 + CSW01_01970 0.25 +0.4
390,794 - CSW01_01970 0.26 +0.7
390,812 + CSW01_01970 0.28 +0.4
390,813 + CSW01_01970 0.28 +0.3
390,829 - CSW01_01970 0.29 +0.2
390,853 + CSW01_01970 0.31 -0.5
390,861 - CSW01_01970 0.32 +0.4
390,960 + CSW01_01970 0.41 +0.8
390,960 + CSW01_01970 0.41 +0.4
390,968 - CSW01_01970 0.41 +0.4
390,970 + CSW01_01970 0.41 -0.2
390,970 + CSW01_01970 0.41 +0.8
390,970 + CSW01_01970 0.41 -0.1
390,970 + CSW01_01970 0.41 +0.2
390,978 - CSW01_01970 0.42 -0.4
390,978 - CSW01_01970 0.42 +0.2
390,978 - CSW01_01970 0.42 -1.3
390,978 - CSW01_01970 0.42 -0.1
390,978 - CSW01_01970 0.42 -0.2
390,982 + CSW01_01970 0.42 -0.2
390,982 + CSW01_01970 0.42 -0.6
390,990 - CSW01_01970 0.43 +0.4
391,005 + CSW01_01970 0.44 +1.3
391,011 + CSW01_01970 0.45 +0.1
391,013 - CSW01_01970 0.45 +1.5
391,029 - CSW01_01970 0.46 +0.1
391,031 - CSW01_01970 0.47 +0.6
391,051 + CSW01_01970 0.48 -0.3
391,172 + CSW01_01970 0.59 -1.0
391,172 + CSW01_01970 0.59 -0.0
391,270 - CSW01_01970 0.67 +2.0
391,283 + CSW01_01970 0.68 +0.3
391,293 + CSW01_01970 0.69 +0.6
391,293 + CSW01_01970 0.69 +0.1
391,293 + CSW01_01970 0.69 +0.3
391,293 + CSW01_01970 0.69 -0.0
391,293 + CSW01_01970 0.69 +0.2
391,293 + CSW01_01970 0.69 +0.7
391,293 + CSW01_01970 0.69 +0.5
391,301 - CSW01_01970 0.69 -1.2
391,301 - CSW01_01970 0.69 -0.4
391,301 - CSW01_01970 0.69 +0.2
391,321 + CSW01_01970 0.71 +0.6
391,327 + CSW01_01970 0.72 +0.3
391,327 + CSW01_01970 0.72 +0.1
391,329 - CSW01_01970 0.72 +0.9
391,373 + CSW01_01970 0.76 +1.1
391,373 + CSW01_01970 0.76 +1.3
391,373 + CSW01_01970 0.76 +1.3
391,373 + CSW01_01970 0.76 -0.1
391,373 + CSW01_01970 0.76 -0.2
391,381 - CSW01_01970 0.76 +0.3
391,381 - CSW01_01970 0.76 -0.6
391,381 - CSW01_01970 0.76 +0.1
391,381 - CSW01_01970 0.76 +0.5
391,381 - CSW01_01970 0.76 -0.1
391,381 - CSW01_01970 0.76 -0.5
391,381 - CSW01_01970 0.76 -0.4
391,435 - CSW01_01970 0.81 +0.7
391,447 + CSW01_01970 0.82 -0.1
391,482 - CSW01_01970 0.85 +1.7
391,485 + CSW01_01970 0.85 +0.8
391,485 + CSW01_01970 0.85 +0.4
391,493 - CSW01_01970 0.86 +0.6
391,495 + CSW01_01970 0.86 +1.3
391,503 - CSW01_01970 0.87 -0.1
391,520 - CSW01_01970 0.88 +1.5
391,520 - CSW01_01970 0.88 +0.2
391,523 + CSW01_01970 0.88 -0.3
391,529 + CSW01_01970 0.89 -0.1
391,529 + CSW01_01970 0.89 +0.7
391,549 - +0.2
391,551 + +0.5
391,564 - +0.2
391,591 + +0.2
391,591 + +0.4
391,683 - +0.6
391,779 + +0.2
391,815 - -0.2
391,954 - CSW01_01975 0.38 +2.3
392,001 - CSW01_01975 0.48 +1.3
392,010 - CSW01_01975 0.50 +0.4
392,052 + CSW01_01975 0.60 -0.7
392,052 + CSW01_01975 0.60 +0.7
392,052 + CSW01_01975 0.60 +0.7
392,067 + CSW01_01975 0.63 +0.7
392,067 + CSW01_01975 0.63 +0.9
392,067 + CSW01_01975 0.63 +0.2
392,067 + CSW01_01975 0.63 +0.1
392,067 + CSW01_01975 0.63 +0.6
392,067 + CSW01_01975 0.63 +0.4
392,067 + CSW01_01975 0.63 +0.8
392,067 + CSW01_01975 0.63 +0.3
392,067 + CSW01_01975 0.63 +0.7
392,067 + CSW01_01975 0.63 +0.8
392,067 + CSW01_01975 0.63 +0.7
392,067 + CSW01_01975 0.63 +0.2
392,067 + CSW01_01975 0.63 +1.1
392,067 + CSW01_01975 0.63 +0.3
392,067 + CSW01_01975 0.63 +0.4
392,075 - CSW01_01975 0.65 +0.9
392,075 - CSW01_01975 0.65 +0.5
392,075 - CSW01_01975 0.65 +0.2
392,075 - CSW01_01975 0.65 +0.6
392,075 - CSW01_01975 0.65 +1.2
392,075 - CSW01_01975 0.65 -0.2
392,075 - CSW01_01975 0.65 +0.9
392,075 - CSW01_01975 0.65 +0.4
392,075 - CSW01_01975 0.65 +0.7
392,075 - CSW01_01975 0.65 +0.0
392,075 - CSW01_01975 0.65 +0.4
392,075 - CSW01_01975 0.65 -0.1
392,075 - CSW01_01975 0.65 +1.2
392,101 + CSW01_01975 0.70 -1.2
392,101 + CSW01_01975 0.70 +0.5
392,109 - CSW01_01975 0.72 +0.8
392,109 - CSW01_01975 0.72 +0.1
392,248 - -0.2
392,283 + +0.8
392,309 + CSW01_01980 0.13 +0.4
392,327 - CSW01_01980 0.17 +0.8
392,329 + CSW01_01980 0.17 -0.3
392,358 + CSW01_01980 0.24 -0.8
392,390 + CSW01_01980 0.30 +1.1
392,400 + CSW01_01980 0.32 +0.2
392,408 - CSW01_01980 0.34 +0.7
392,417 + CSW01_01980 0.36 +0.6
392,423 - CSW01_01980 0.37 +0.3
392,425 + CSW01_01980 0.38 +1.1
392,433 - CSW01_01980 0.40 -0.1
392,462 - CSW01_01980 0.46 +1.2
392,524 - CSW01_01980 0.59 +1.3
392,528 + CSW01_01980 0.60 +0.4
392,528 + CSW01_01980 0.60 -0.2
392,536 - CSW01_01980 0.62 -0.0
392,583 + CSW01_01980 0.72 +1.0
392,583 + CSW01_01980 0.72 +0.6
392,583 + CSW01_01980 0.72 +0.1
392,591 - CSW01_01980 0.73 -1.0
392,593 - CSW01_01980 0.74 -0.0
392,603 + CSW01_01980 0.76 +1.4
392,624 + CSW01_01980 0.80 +0.5
392,624 + CSW01_01980 0.80 +0.1

Or see this region's nucleotide sequence