Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01615

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01605 and CSW01_01610 are separated by 107 nucleotidesCSW01_01610 and CSW01_01615 are separated by 25 nucleotidesCSW01_01615 and CSW01_01620 are separated by 284 nucleotides CSW01_01605: CSW01_01605 - 23S ribosomal RNA, at 324,926 to 327,841 _01605 CSW01_01610: CSW01_01610 - 5S ribosomal RNA, at 327,949 to 328,064 _01610 CSW01_01615: CSW01_01615 - tRNA-Asp, at 328,090 to 328,166 _01615 CSW01_01620: CSW01_01620 - phosphatidylserine synthase, at 328,451 to 329,791 _01620 Position (kb) 328 329Strain fitness (log2 ratio) -1 0 1at 328.372 kb on + strandat 328.392 kb on + strandat 328.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
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328,372 + +1.0
328,392 + -0.5
328,400 - +0.3

Or see this region's nucleotide sequence