Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00530 and CSW01_00535 are separated by 6 nucleotides CSW01_00535 and CSW01_00540 are separated by 80 nucleotides CSW01_00540 and CSW01_00545 are separated by 464 nucleotides
CSW01_00530: CSW01_00530 - rhomboid family intramembrane serine protease GlpG, at 97,947 to 98,780
_00530
CSW01_00535: CSW01_00535 - thiosulfate sulfurtransferase, at 98,787 to 99,107
_00535
CSW01_00540: CSW01_00540 - hypothetical protein, at 99,188 to 99,403
_00540
CSW01_00545: CSW01_00545 - TatD family deoxyribonuclease, at 99,868 to 100,635
_00545
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.788 kb on + strand at 97.788 kb on + strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.796 kb on - strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.821 kb on + strand at 97.858 kb on + strand at 97.861 kb on - strand at 97.866 kb on - strand at 97.911 kb on + strand at 97.977 kb on - strand at 97.993 kb on - strand at 98.006 kb on - strand at 98.015 kb on - strand at 98.048 kb on - strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.070 kb on - strand, within CSW01_00530 at 98.070 kb on - strand, within CSW01_00530 at 98.072 kb on + strand, within CSW01_00530 at 98.080 kb on - strand, within CSW01_00530 at 98.080 kb on - strand, within CSW01_00530 at 98.108 kb on - strand, within CSW01_00530 at 98.109 kb on - strand, within CSW01_00530 at 98.111 kb on + strand, within CSW01_00530 at 98.119 kb on - strand, within CSW01_00530 at 98.154 kb on + strand, within CSW01_00530 at 98.163 kb on - strand, within CSW01_00530 at 98.169 kb on + strand, within CSW01_00530 at 98.192 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.212 kb on + strand, within CSW01_00530 at 98.220 kb on - strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.260 kb on - strand, within CSW01_00530 at 98.260 kb on - strand, within CSW01_00530 at 98.269 kb on - strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.302 kb on - strand, within CSW01_00530 at 98.318 kb on - strand, within CSW01_00530 at 98.351 kb on + strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.407 kb on + strand, within CSW01_00530 at 98.407 kb on - strand, within CSW01_00530 at 98.415 kb on - strand, within CSW01_00530 at 98.437 kb on - strand, within CSW01_00530 at 98.437 kb on - strand, within CSW01_00530 at 98.444 kb on + strand, within CSW01_00530 at 98.444 kb on - strand, within CSW01_00530 at 98.452 kb on - strand, within CSW01_00530 at 98.470 kb on + strand, within CSW01_00530 at 98.478 kb on - strand, within CSW01_00530 at 98.495 kb on - strand, within CSW01_00530 at 98.519 kb on + strand, within CSW01_00530 at 98.558 kb on - strand, within CSW01_00530 at 98.593 kb on + strand, within CSW01_00530 at 98.601 kb on - strand, within CSW01_00530 at 98.648 kb on - strand, within CSW01_00530 at 98.651 kb on - strand, within CSW01_00530 at 98.651 kb on - strand, within CSW01_00530 at 98.668 kb on - strand, within CSW01_00530 at 98.678 kb on - strand, within CSW01_00530 at 98.736 kb on + strand at 98.737 kb on + strand at 98.817 kb on + strand at 98.825 kb on + strand, within CSW01_00535 at 98.825 kb on - strand, within CSW01_00535 at 98.842 kb on + strand, within CSW01_00535 at 98.842 kb on + strand, within CSW01_00535 at 98.845 kb on + strand, within CSW01_00535 at 98.845 kb on + strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.877 kb on + strand, within CSW01_00535 at 98.877 kb on + strand, within CSW01_00535 at 98.885 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.975 kb on - strand, within CSW01_00535 at 99.117 kb on - strand at 99.153 kb on + strand at 99.169 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.221 kb on + strand, within CSW01_00540 at 99.224 kb on - strand, within CSW01_00540 at 99.345 kb on + strand, within CSW01_00540 at 99.512 kb on + strand at 99.581 kb on - strand at 99.585 kb on + strand at 99.585 kb on + strand at 99.672 kb on + strand at 99.680 kb on - strand at 99.680 kb on - strand at 99.683 kb on + strand at 99.698 kb on + strand at 99.698 kb on + strand at 99.879 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.938 kb on + strand at 99.946 kb on - strand, within CSW01_00545 at 99.981 kb on - strand, within CSW01_00545 at 100.028 kb on - strand, within CSW01_00545 at 100.072 kb on + strand, within CSW01_00545
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17A remove 97,788 + +0.2 97,788 + -1.1 97,793 + +0.9 97,793 + +0.5 97,793 + +0.6 97,796 - -0.5 97,808 + -0.1 97,808 + -0.1 97,808 + -0.3 97,808 + -2.1 97,816 - -0.7 97,816 - -0.9 97,816 - -0.5 97,816 - -0.2 97,821 + -0.3 97,858 + -0.4 97,861 - -0.4 97,866 - +0.1 97,911 + -0.3 97,977 - +0.6 97,993 - +0.3 98,006 - +0.1 98,015 - +0.5 98,048 - CSW01_00530 0.12 -0.3 98,052 + CSW01_00530 0.13 -0.5 98,052 + CSW01_00530 0.13 +0.4 98,052 + CSW01_00530 0.13 +0.2 98,052 + CSW01_00530 0.13 +0.4 98,052 + CSW01_00530 0.13 +0.3 98,052 + CSW01_00530 0.13 +0.0 98,052 + CSW01_00530 0.13 +0.1 98,052 + CSW01_00530 0.13 +0.5 98,052 + CSW01_00530 0.13 -1.1 98,060 - CSW01_00530 0.14 +0.8 98,060 - CSW01_00530 0.14 -0.1 98,060 - CSW01_00530 0.14 +0.2 98,060 - CSW01_00530 0.14 +0.2 98,060 - CSW01_00530 0.14 -0.4 98,060 - CSW01_00530 0.14 -0.7 98,060 - CSW01_00530 0.14 +0.0 98,060 - CSW01_00530 0.14 +0.2 98,060 - CSW01_00530 0.14 +0.9 98,060 - CSW01_00530 0.14 -0.3 98,060 - CSW01_00530 0.14 -0.3 98,070 - CSW01_00530 0.15 -0.8 98,070 - CSW01_00530 0.15 -0.2 98,072 + CSW01_00530 0.15 -0.5 98,080 - CSW01_00530 0.16 -0.4 98,080 - CSW01_00530 0.16 +0.7 98,108 - CSW01_00530 0.19 -0.4 98,109 - CSW01_00530 0.19 +0.2 98,111 + CSW01_00530 0.20 +2.0 98,119 - CSW01_00530 0.21 +0.4 98,154 + CSW01_00530 0.25 +0.2 98,163 - CSW01_00530 0.26 +0.2 98,169 + CSW01_00530 0.27 -0.4 98,192 + CSW01_00530 0.29 -0.1 98,202 + CSW01_00530 0.31 +0.2 98,202 + CSW01_00530 0.31 +0.3 98,202 + CSW01_00530 0.31 -0.4 98,202 + CSW01_00530 0.31 +0.7 98,210 - CSW01_00530 0.32 +1.1 98,210 - CSW01_00530 0.32 +0.5 98,210 - CSW01_00530 0.32 +0.1 98,210 - CSW01_00530 0.32 -0.0 98,210 - CSW01_00530 0.32 +0.7 98,210 - CSW01_00530 0.32 -0.9 98,212 + CSW01_00530 0.32 -0.4 98,220 - CSW01_00530 0.33 +0.4 98,252 + CSW01_00530 0.37 -0.2 98,252 + CSW01_00530 0.37 -0.7 98,252 + CSW01_00530 0.37 -0.1 98,260 - CSW01_00530 0.38 +0.0 98,260 - CSW01_00530 0.38 +0.2 98,269 - CSW01_00530 0.39 +0.8 98,273 + CSW01_00530 0.39 +1.3 98,273 + CSW01_00530 0.39 +0.4 98,273 + CSW01_00530 0.39 +0.1 98,273 + CSW01_00530 0.39 +0.8 98,273 + CSW01_00530 0.39 -0.0 98,281 - CSW01_00530 0.40 -0.1 98,281 - CSW01_00530 0.40 -0.7 98,281 - CSW01_00530 0.40 -0.3 98,281 - CSW01_00530 0.40 -0.2 98,281 - CSW01_00530 0.40 +0.3 98,281 - CSW01_00530 0.40 -0.3 98,281 - CSW01_00530 0.40 +0.7 98,281 - CSW01_00530 0.40 -0.3 98,281 - CSW01_00530 0.40 -0.2 98,281 - CSW01_00530 0.40 -0.2 98,281 - CSW01_00530 0.40 -0.7 98,281 - CSW01_00530 0.40 -0.2 98,302 - CSW01_00530 0.43 +0.2 98,318 - CSW01_00530 0.44 -0.4 98,351 + CSW01_00530 0.48 -0.3 98,359 - CSW01_00530 0.49 +0.5 98,359 - CSW01_00530 0.49 -0.0 98,359 - CSW01_00530 0.49 -0.2 98,407 + CSW01_00530 0.55 +0.2 98,407 - CSW01_00530 0.55 -1.4 98,415 - CSW01_00530 0.56 -0.7 98,437 - CSW01_00530 0.59 +0.1 98,437 - CSW01_00530 0.59 +0.9 98,444 + CSW01_00530 0.60 -0.5 98,444 - CSW01_00530 0.60 +1.2 98,452 - CSW01_00530 0.61 -0.0 98,470 + CSW01_00530 0.63 +0.2 98,478 - CSW01_00530 0.64 +1.0 98,495 - CSW01_00530 0.66 -0.2 98,519 + CSW01_00530 0.69 +0.1 98,558 - CSW01_00530 0.73 +0.4 98,593 + CSW01_00530 0.77 +0.8 98,601 - CSW01_00530 0.78 +0.2 98,648 - CSW01_00530 0.84 +1.3 98,651 - CSW01_00530 0.84 +0.1 98,651 - CSW01_00530 0.84 -0.9 98,668 - CSW01_00530 0.86 +0.1 98,678 - CSW01_00530 0.88 +0.4 98,736 + -0.1 98,737 + +0.4 98,817 + -0.2 98,825 + CSW01_00535 0.12 -0.5 98,825 - CSW01_00535 0.12 +0.2 98,842 + CSW01_00535 0.17 -0.3 98,842 + CSW01_00535 0.17 +0.3 98,845 + CSW01_00535 0.18 +0.1 98,845 + CSW01_00535 0.18 +0.2 98,853 - CSW01_00535 0.21 -0.0 98,853 - CSW01_00535 0.21 -0.3 98,853 - CSW01_00535 0.21 -0.1 98,853 - CSW01_00535 0.21 +0.1 98,853 - CSW01_00535 0.21 -1.5 98,877 + CSW01_00535 0.28 -0.4 98,877 + CSW01_00535 0.28 -0.3 98,885 - CSW01_00535 0.31 -0.1 98,971 - CSW01_00535 0.57 -0.5 98,971 - CSW01_00535 0.57 +0.3 98,975 - CSW01_00535 0.59 +0.3 99,117 - -0.1 99,153 + -0.1 99,169 + +0.7 99,180 + -0.1 99,180 + +1.2 99,180 + +0.1 99,180 + +0.3 99,180 + +0.9 99,221 + CSW01_00540 0.15 +0.0 99,224 - CSW01_00540 0.17 -0.6 99,345 + CSW01_00540 0.73 -0.1 99,512 + -1.3 99,581 - -1.9 99,585 + +0.6 99,585 + -0.9 99,672 + -0.4 99,680 - -0.5 99,680 - -0.2 99,683 + +0.1 99,698 + +0.0 99,698 + +0.3 99,879 + -0.0 99,938 + -0.2 99,938 + +0.1 99,938 + +0.1 99,938 + +0.2 99,946 - CSW01_00545 0.10 -0.1 99,981 - CSW01_00545 0.15 -0.3 100,028 - CSW01_00545 0.21 +0.0 100,072 + CSW01_00545 0.27 +0.1
Or see this region's nucleotide sequence