Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29495

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29485 and AO356_29490 are separated by 152 nucleotidesAO356_29490 and AO356_29495 are separated by 64 nucleotidesAO356_29495 and AO356_29500 are separated by 32 nucleotidesAO356_29500 and AO356_29505 are separated by 191 nucleotidesAO356_29505 and AO356_29510 are separated by 1 nucleotides AO356_29485: AO356_29485 - LysR family transcriptional regulator, at 6,859,185 to 6,860,078 _29485 AO356_29490: AO356_29490 - ArsR family transcriptional regulator, at 6,860,231 to 6,860,533 _29490 AO356_29495: AO356_29495 - NADPH:quinone oxidoreductase, at 6,860,598 to 6,861,572 _29495 AO356_29500: AO356_29500 - monooxygenase, at 6,861,605 to 6,861,964 _29500 AO356_29505: AO356_29505 - biopolymer transporter ExbD, at 6,862,156 to 6,862,557 _29505 AO356_29510: AO356_29510 - biopolymer transporter ExbB, at 6,862,559 to 6,863,278 _29510 Position (kb) 6860 6861 6862Strain fitness (log2 ratio) -2 -1 0 1 2at 6859.702 kb on - strand, within AO356_29485at 6859.702 kb on - strand, within AO356_29485at 6859.705 kb on + strand, within AO356_29485at 6859.706 kb on - strand, within AO356_29485at 6859.841 kb on + strand, within AO356_29485at 6859.842 kb on - strand, within AO356_29485at 6860.002 kb on + strandat 6860.047 kb on + strandat 6860.048 kb on - strandat 6860.163 kb on + strandat 6860.185 kb on + strandat 6860.185 kb on + strandat 6860.185 kb on + strandat 6860.186 kb on - strandat 6860.239 kb on - strandat 6860.239 kb on - strandat 6860.471 kb on + strand, within AO356_29490at 6860.471 kb on + strand, within AO356_29490at 6860.474 kb on + strand, within AO356_29490at 6860.475 kb on - strand, within AO356_29490at 6860.542 kb on + strandat 6860.543 kb on - strandat 6860.595 kb on - strandat 6860.595 kb on - strandat 6860.597 kb on + strandat 6860.597 kb on + strandat 6860.598 kb on - strandat 6860.598 kb on - strandat 6860.598 kb on - strandat 6860.598 kb on - strandat 6860.615 kb on + strandat 6860.615 kb on + strandat 6860.616 kb on - strandat 6860.616 kb on - strandat 6860.856 kb on + strand, within AO356_29495at 6860.889 kb on + strand, within AO356_29495at 6860.890 kb on - strand, within AO356_29495at 6860.890 kb on - strand, within AO356_29495at 6861.177 kb on + strand, within AO356_29495at 6861.192 kb on + strand, within AO356_29495at 6861.192 kb on + strand, within AO356_29495at 6861.192 kb on + strand, within AO356_29495at 6861.193 kb on - strand, within AO356_29495at 6861.193 kb on - strand, within AO356_29495at 6861.193 kb on - strand, within AO356_29495at 6861.372 kb on + strand, within AO356_29495at 6861.373 kb on - strand, within AO356_29495at 6861.469 kb on - strand, within AO356_29495at 6861.584 kb on + strandat 6861.584 kb on + strandat 6861.612 kb on - strandat 6861.765 kb on + strand, within AO356_29500at 6861.766 kb on - strand, within AO356_29500at 6861.766 kb on - strand, within AO356_29500at 6861.910 kb on + strand, within AO356_29500at 6861.910 kb on + strand, within AO356_29500at 6861.938 kb on - strandat 6861.938 kb on - strandat 6861.994 kb on + strandat 6861.994 kb on + strandat 6861.994 kb on + strandat 6861.994 kb on + strandat 6861.995 kb on - strandat 6862.026 kb on - strandat 6862.026 kb on - strandat 6862.042 kb on + strandat 6862.082 kb on + strandat 6862.082 kb on + strandat 6862.089 kb on + strandat 6862.089 kb on + strandat 6862.089 kb on + strandat 6862.089 kb on + strandat 6862.090 kb on - strandat 6862.090 kb on - strandat 6862.090 kb on - strandat 6862.090 kb on - strandat 6862.090 kb on - strandat 6862.090 kb on - strandat 6862.157 kb on + strandat 6862.158 kb on - strandat 6862.158 kb on - strandat 6862.232 kb on + strand, within AO356_29505at 6862.233 kb on - strand, within AO356_29505at 6862.233 kb on - strand, within AO356_29505at 6862.233 kb on - strand, within AO356_29505at 6862.267 kb on + strand, within AO356_29505at 6862.267 kb on + strand, within AO356_29505at 6862.268 kb on - strand, within AO356_29505at 6862.268 kb on - strand, within AO356_29505at 6862.465 kb on - strand, within AO356_29505at 6862.465 kb on - strand, within AO356_29505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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6,859,702 - AO356_29485 0.58 +0.9
6,859,702 - AO356_29485 0.58 +2.1
6,859,705 + AO356_29485 0.58 +0.7
6,859,706 - AO356_29485 0.58 -0.4
6,859,841 + AO356_29485 0.73 +0.4
6,859,842 - AO356_29485 0.73 +0.4
6,860,002 + +0.3
6,860,047 + -0.7
6,860,048 - +0.0
6,860,163 + +0.1
6,860,185 + +1.4
6,860,185 + +0.5
6,860,185 + +0.6
6,860,186 - -0.6
6,860,239 - -0.3
6,860,239 - -0.5
6,860,471 + AO356_29490 0.79 -0.2
6,860,471 + AO356_29490 0.79 -0.9
6,860,474 + AO356_29490 0.80 -1.3
6,860,475 - AO356_29490 0.81 -0.2
6,860,542 + +0.9
6,860,543 - -0.0
6,860,595 - -0.7
6,860,595 - +0.1
6,860,597 + -0.1
6,860,597 + -0.1
6,860,598 - +0.8
6,860,598 - -0.4
6,860,598 - -2.0
6,860,598 - +0.2
6,860,615 + +0.4
6,860,615 + -0.5
6,860,616 - -0.2
6,860,616 - +0.6
6,860,856 + AO356_29495 0.26 -0.6
6,860,889 + AO356_29495 0.30 -1.3
6,860,890 - AO356_29495 0.30 -0.3
6,860,890 - AO356_29495 0.30 +1.1
6,861,177 + AO356_29495 0.59 -0.3
6,861,192 + AO356_29495 0.61 -0.8
6,861,192 + AO356_29495 0.61 +0.6
6,861,192 + AO356_29495 0.61 +0.5
6,861,193 - AO356_29495 0.61 +0.2
6,861,193 - AO356_29495 0.61 +0.2
6,861,193 - AO356_29495 0.61 -0.1
6,861,372 + AO356_29495 0.79 -1.4
6,861,373 - AO356_29495 0.79 +1.0
6,861,469 - AO356_29495 0.89 -0.0
6,861,584 + -0.6
6,861,584 + -0.1
6,861,612 - -2.7
6,861,765 + AO356_29500 0.44 +0.6
6,861,766 - AO356_29500 0.45 +0.3
6,861,766 - AO356_29500 0.45 +0.7
6,861,910 + AO356_29500 0.85 +0.1
6,861,910 + AO356_29500 0.85 -0.3
6,861,938 - -0.2
6,861,938 - +1.4
6,861,994 + +1.1
6,861,994 + -0.1
6,861,994 + -0.5
6,861,994 + -0.0
6,861,995 - +0.8
6,862,026 - +0.5
6,862,026 - +0.8
6,862,042 + -0.2
6,862,082 + -0.1
6,862,082 + +1.1
6,862,089 + +0.5
6,862,089 + +0.2
6,862,089 + -0.3
6,862,089 + +0.3
6,862,090 - +0.5
6,862,090 - +0.0
6,862,090 - -0.1
6,862,090 - -0.3
6,862,090 - +0.5
6,862,090 - -1.4
6,862,157 + -0.7
6,862,158 - +0.1
6,862,158 - -0.2
6,862,232 + AO356_29505 0.19 -0.0
6,862,233 - AO356_29505 0.19 +0.5
6,862,233 - AO356_29505 0.19 -2.0
6,862,233 - AO356_29505 0.19 +0.4
6,862,267 + AO356_29505 0.28 +0.1
6,862,267 + AO356_29505 0.28 +0.1
6,862,268 - AO356_29505 0.28 -1.3
6,862,268 - AO356_29505 0.28 +0.6
6,862,465 - AO356_29505 0.77 +0.6
6,862,465 - AO356_29505 0.77 +1.4

Or see this region's nucleotide sequence