Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20195

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20185 and AO356_20190 are separated by 20 nucleotidesAO356_20190 and AO356_20195 overlap by 8 nucleotidesAO356_20195 and AO356_20200 are separated by 49 nucleotidesAO356_20200 and AO356_20205 are separated by 11 nucleotides AO356_20185: AO356_20185 - aminodeoxychorismate lyase, at 4,514,835 to 4,515,995 _20185 AO356_20190: AO356_20190 - thymidylate kinase, at 4,516,016 to 4,516,648 _20190 AO356_20195: AO356_20195 - DNA polymerase III subunit delta', at 4,516,641 to 4,517,627 _20195 AO356_20200: AO356_20200 - pilus assembly protein PilZ, at 4,517,677 to 4,518,033 _20200 AO356_20205: AO356_20205 - hydrolase TatD, at 4,518,045 to 4,518,839 _20205 Position (kb) 4516 4517 4518Strain fitness (log2 ratio) -2 -1 0 1at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.645 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.647 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.654 kb on + strand, within AO356_20185at 4515.747 kb on + strand, within AO356_20185at 4515.747 kb on + strand, within AO356_20185at 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.643 kb on + strandat 4517.644 kb on - strandat 4517.646 kb on + strandat 4517.647 kb on - strandat 4517.647 kb on - strandat 4517.647 kb on - strandat 4517.749 kb on + strand, within AO356_20200at 4517.750 kb on - strand, within AO356_20200at 4517.750 kb on - strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.758 kb on + strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.759 kb on - strand, within AO356_20200at 4517.934 kb on - strand, within AO356_20200at 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.024 kb on + strandat 4518.025 kb on - strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.031 kb on + strandat 4518.032 kb on - strandat 4518.032 kb on - strandat 4518.032 kb on - strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.044 kb on + strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.045 kb on - strandat 4518.052 kb on + strandat 4518.052 kb on + strandat 4518.053 kb on - strandat 4518.053 kb on - strandat 4518.211 kb on - strand, within AO356_20205at 4518.342 kb on + strand, within AO356_20205at 4518.343 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.349 kb on - strand, within AO356_20205at 4518.558 kb on + strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.559 kb on - strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.561 kb on + strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205at 4518.562 kb on - strand, within AO356_20205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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4,515,645 + AO356_20185 0.70 +0.6
4,515,645 + AO356_20185 0.70 +1.3
4,515,645 + AO356_20185 0.70 +0.3
4,515,645 + AO356_20185 0.70 -0.2
4,515,645 + AO356_20185 0.70 -0.5
4,515,647 + AO356_20185 0.70 -0.1
4,515,647 + AO356_20185 0.70 +0.3
4,515,647 + AO356_20185 0.70 +0.4
4,515,647 + AO356_20185 0.70 +0.4
4,515,647 + AO356_20185 0.70 -0.6
4,515,654 + AO356_20185 0.71 +0.5
4,515,654 + AO356_20185 0.71 -0.4
4,515,654 + AO356_20185 0.71 -0.5
4,515,654 + AO356_20185 0.71 +1.2
4,515,747 + AO356_20185 0.79 -0.2
4,515,747 + AO356_20185 0.79 -0.1
4,517,643 + +0.1
4,517,643 + +0.2
4,517,643 + +0.5
4,517,643 + -0.4
4,517,643 + +0.7
4,517,644 - +0.5
4,517,646 + +0.3
4,517,647 - -0.5
4,517,647 - -0.2
4,517,647 - +0.1
4,517,749 + AO356_20200 0.20 -0.1
4,517,750 - AO356_20200 0.20 -0.6
4,517,750 - AO356_20200 0.20 -1.2
4,517,758 + AO356_20200 0.23 -0.3
4,517,758 + AO356_20200 0.23 -0.4
4,517,758 + AO356_20200 0.23 +1.2
4,517,758 + AO356_20200 0.23 +1.0
4,517,758 + AO356_20200 0.23 +0.3
4,517,758 + AO356_20200 0.23 +0.1
4,517,759 - AO356_20200 0.23 -1.0
4,517,759 - AO356_20200 0.23 +0.5
4,517,759 - AO356_20200 0.23 -0.4
4,517,759 - AO356_20200 0.23 -0.9
4,517,759 - AO356_20200 0.23 +0.5
4,517,759 - AO356_20200 0.23 +0.0
4,517,759 - AO356_20200 0.23 -0.1
4,517,934 - AO356_20200 0.72 +0.1
4,518,024 + -1.1
4,518,024 + -0.3
4,518,024 + +0.3
4,518,024 + +0.2
4,518,025 - -2.3
4,518,031 + +1.3
4,518,031 + +0.3
4,518,031 + -0.4
4,518,031 + -0.7
4,518,031 + +0.9
4,518,031 + +0.7
4,518,032 - -0.1
4,518,032 - -0.6
4,518,032 - +0.7
4,518,044 + +0.1
4,518,044 + +1.1
4,518,044 + +0.6
4,518,044 + +0.6
4,518,044 + +1.3
4,518,044 + +1.0
4,518,045 - +0.4
4,518,045 - -0.1
4,518,045 - +0.6
4,518,045 - -0.0
4,518,045 - -0.4
4,518,052 + -0.1
4,518,052 + +0.3
4,518,053 - +0.4
4,518,053 - -0.1
4,518,211 - AO356_20205 0.21 +1.1
4,518,342 + AO356_20205 0.37 -0.5
4,518,343 - AO356_20205 0.37 -0.4
4,518,349 - AO356_20205 0.38 +0.7
4,518,349 - AO356_20205 0.38 -0.5
4,518,349 - AO356_20205 0.38 +1.1
4,518,349 - AO356_20205 0.38 +0.5
4,518,558 + AO356_20205 0.65 +0.4
4,518,559 - AO356_20205 0.65 +0.6
4,518,559 - AO356_20205 0.65 +0.0
4,518,559 - AO356_20205 0.65 +0.1
4,518,559 - AO356_20205 0.65 -0.2
4,518,559 - AO356_20205 0.65 +0.7
4,518,561 + AO356_20205 0.65 +0.5
4,518,561 + AO356_20205 0.65 +0.4
4,518,561 + AO356_20205 0.65 -0.3
4,518,561 + AO356_20205 0.65 -0.2
4,518,561 + AO356_20205 0.65 -0.5
4,518,561 + AO356_20205 0.65 +0.3
4,518,561 + AO356_20205 0.65 +0.3
4,518,561 + AO356_20205 0.65 -0.2
4,518,561 + AO356_20205 0.65 -0.1
4,518,561 + AO356_20205 0.65 +0.8
4,518,562 - AO356_20205 0.65 +0.9
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 -1.0
4,518,562 - AO356_20205 0.65 -0.3
4,518,562 - AO356_20205 0.65 +0.4

Or see this region's nucleotide sequence