Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07740 and AO356_07745 are separated by 54 nucleotides AO356_07745 and AO356_07750 overlap by 4 nucleotides AO356_07750 and AO356_07755 are separated by 230 nucleotides
AO356_07740: AO356_07740 - chemotaxis protein, at 1,720,665 to 1,722,584
_07740
AO356_07745: AO356_07745 - plasmid stabilization protein, at 1,722,639 to 1,723,058
_07745
AO356_07750: AO356_07750 - plasmid stabilization protein, at 1,723,055 to 1,723,300
_07750
AO356_07755: AO356_07755 - toxin, at 1,723,531 to 1,726,080
_07755
Position (kb)
1722
1723
1724 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1722.623 kb on - strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.692 kb on + strand, within AO356_07745 at 1722.708 kb on + strand, within AO356_07745 at 1722.731 kb on + strand, within AO356_07745 at 1722.732 kb on - strand, within AO356_07745 at 1722.802 kb on + strand, within AO356_07745 at 1723.053 kb on + strand at 1723.053 kb on + strand at 1723.054 kb on - strand at 1723.054 kb on - strand at 1723.065 kb on - strand at 1723.193 kb on + strand, within AO356_07750 at 1723.262 kb on + strand, within AO356_07750 at 1723.263 kb on - strand, within AO356_07750 at 1723.285 kb on + strand at 1723.286 kb on - strand at 1723.300 kb on + strand at 1723.301 kb on - strand at 1723.338 kb on + strand at 1723.339 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.432 kb on + strand at 1723.454 kb on + strand at 1723.479 kb on + strand at 1723.480 kb on - strand at 1723.480 kb on - strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.522 kb on - strand at 1723.619 kb on + strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.723 kb on + strand at 1723.723 kb on + strand at 1723.723 kb on + strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.741 kb on + strand at 1723.933 kb on + strand, within AO356_07755 at 1723.933 kb on + strand, within AO356_07755 at 1723.934 kb on - strand, within AO356_07755 at 1723.934 kb on - strand, within AO356_07755 at 1723.948 kb on + strand, within AO356_07755 at 1723.948 kb on + strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.988 kb on + strand, within AO356_07755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,722,623 - -0.4 1,722,626 + -1.8 1,722,626 + +0.4 1,722,626 + +0.1 1,722,626 + +1.8 1,722,626 + +1.2 1,722,626 + -0.0 1,722,626 + +0.3 1,722,627 - -0.4 1,722,627 - +0.5 1,722,627 - -0.2 1,722,627 - +0.1 1,722,627 - +0.5 1,722,627 - -1.7 1,722,627 - -0.3 1,722,627 - -0.7 1,722,627 - -0.3 1,722,627 - +0.1 1,722,692 + AO356_07745 0.13 -0.5 1,722,708 + AO356_07745 0.16 +0.1 1,722,731 + AO356_07745 0.22 -0.5 1,722,732 - AO356_07745 0.22 -2.6 1,722,802 + AO356_07745 0.39 -0.3 1,723,053 + +0.7 1,723,053 + -1.1 1,723,054 - +0.4 1,723,054 - +0.5 1,723,065 - -1.3 1,723,193 + AO356_07750 0.56 -0.3 1,723,262 + AO356_07750 0.84 -0.2 1,723,263 - AO356_07750 0.85 -0.0 1,723,285 + +1.0 1,723,286 - -1.6 1,723,300 + -0.3 1,723,301 - -0.9 1,723,338 + +0.5 1,723,339 - +0.6 1,723,344 - +1.1 1,723,344 - -0.6 1,723,344 - +0.6 1,723,432 + -0.4 1,723,454 + +0.6 1,723,479 + +0.9 1,723,480 - -0.3 1,723,480 - +0.6 1,723,521 + -0.9 1,723,521 + -0.1 1,723,521 + +0.1 1,723,522 - +1.5 1,723,619 + +0.8 1,723,620 - -0.2 1,723,620 - +0.7 1,723,620 - -0.5 1,723,620 - -0.6 1,723,620 - +0.1 1,723,620 - +0.3 1,723,723 + -1.4 1,723,723 + +0.2 1,723,723 + +0.1 1,723,724 - +0.7 1,723,724 - -0.6 1,723,724 - -0.1 1,723,724 - -0.0 1,723,724 - +0.2 1,723,741 + +0.4 1,723,933 + AO356_07755 0.16 +0.9 1,723,933 + AO356_07755 0.16 -1.5 1,723,934 - AO356_07755 0.16 -0.2 1,723,934 - AO356_07755 0.16 +2.0 1,723,948 + AO356_07755 0.16 -0.4 1,723,948 + AO356_07755 0.16 +0.6 1,723,949 - AO356_07755 0.16 +0.4 1,723,949 - AO356_07755 0.16 +0.1 1,723,949 - AO356_07755 0.16 +0.0 1,723,988 + AO356_07755 0.18 -0.1
Or see this region's nucleotide sequence