Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3966 and Dshi_3967 are separated by 188 nucleotides Dshi_3967 and Dshi_3968 are separated by 63 nucleotides Dshi_3968 and Dshi_3969 are separated by 160 nucleotides Dshi_3969 and Dshi_3970 are separated by 167 nucleotides Dshi_3970 and Dshi_3971 are separated by 124 nucleotides
Dshi_3966: Dshi_3966 - hypothetical protein (RefSeq), at 29,536 to 30,282
_3966
Dshi_3967: Dshi_3967 - transcriptional regulator, ArsR family (RefSeq), at 30,471 to 30,821
_3967
Dshi_3968: Dshi_3968 - cation efflux protein (RefSeq), at 30,885 to 31,736
_3968
Dshi_3969: Dshi_3969 - hypothetical protein (RefSeq), at 31,897 to 32,124
_3969
Dshi_3970: Dshi_3970 - transcriptional regulator, XRE family (RefSeq), at 32,292 to 32,549
_3970
Dshi_3971: Dshi_3971 - hypothetical protein (RefSeq), at 32,674 to 32,994
_3971
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.885 kb on - strand, within Dshi_3966 at 29.887 kb on + strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.920 kb on - strand, within Dshi_3966 at 29.921 kb on + strand, within Dshi_3966 at 29.929 kb on - strand, within Dshi_3966 at 29.938 kb on - strand, within Dshi_3966 at 29.942 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.952 kb on + strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.960 kb on - strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.962 kb on + strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.970 kb on - strand, within Dshi_3966 at 29.977 kb on + strand, within Dshi_3966 at 29.993 kb on + strand, within Dshi_3966 at 30.000 kb on + strand, within Dshi_3966 at 30.000 kb on + strand, within Dshi_3966 at 30.046 kb on + strand, within Dshi_3966 at 30.046 kb on + strand, within Dshi_3966 at 30.054 kb on - strand, within Dshi_3966 at 30.054 kb on - strand, within Dshi_3966 at 30.057 kb on + strand, within Dshi_3966 at 30.092 kb on + strand, within Dshi_3966 at 30.100 kb on - strand, within Dshi_3966 at 30.105 kb on - strand, within Dshi_3966 at 30.120 kb on + strand, within Dshi_3966 at 30.149 kb on + strand, within Dshi_3966 at 30.156 kb on + strand, within Dshi_3966 at 30.185 kb on + strand, within Dshi_3966 at 30.208 kb on + strand at 30.214 kb on - strand at 30.216 kb on - strand at 30.216 kb on - strand at 30.218 kb on + strand at 30.223 kb on + strand at 30.226 kb on - strand at 30.255 kb on + strand at 30.268 kb on - strand at 30.268 kb on - strand at 30.270 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.287 kb on + strand at 30.295 kb on - strand at 30.295 kb on - strand at 30.295 kb on - strand at 30.308 kb on + strand at 30.313 kb on + strand at 30.316 kb on - strand at 30.318 kb on + strand at 30.318 kb on + strand at 30.320 kb on + strand at 30.321 kb on - strand at 30.326 kb on - strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.332 kb on + strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.335 kb on - strand at 30.352 kb on + strand at 30.366 kb on + strand at 30.373 kb on + strand at 30.386 kb on + strand at 30.403 kb on - strand at 30.425 kb on - strand at 30.438 kb on - strand at 30.476 kb on + strand at 30.485 kb on - strand at 30.492 kb on + strand at 30.492 kb on + strand at 30.527 kb on + strand, within Dshi_3967 at 30.616 kb on + strand, within Dshi_3967 at 30.616 kb on + strand, within Dshi_3967 at 30.628 kb on - strand, within Dshi_3967 at 30.646 kb on - strand, within Dshi_3967 at 30.697 kb on - strand, within Dshi_3967 at 30.697 kb on - strand, within Dshi_3967 at 30.700 kb on + strand, within Dshi_3967 at 30.701 kb on - strand, within Dshi_3967 at 30.713 kb on - strand, within Dshi_3967 at 30.754 kb on - strand, within Dshi_3967 at 30.770 kb on + strand, within Dshi_3967 at 30.778 kb on - strand, within Dshi_3967 at 30.890 kb on - strand at 30.890 kb on - strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.948 kb on + strand at 30.956 kb on - strand at 30.956 kb on - strand at 30.956 kb on - strand at 30.995 kb on + strand, within Dshi_3968 at 30.997 kb on + strand, within Dshi_3968 at 30.997 kb on + strand, within Dshi_3968 at 31.005 kb on - strand, within Dshi_3968 at 31.008 kb on + strand, within Dshi_3968 at 31.016 kb on - strand, within Dshi_3968 at 31.016 kb on - strand, within Dshi_3968 at 31.018 kb on + strand, within Dshi_3968 at 31.033 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.043 kb on + strand, within Dshi_3968 at 31.051 kb on - strand, within Dshi_3968 at 31.132 kb on - strand, within Dshi_3968 at 31.133 kb on + strand, within Dshi_3968 at 31.135 kb on + strand, within Dshi_3968 at 31.143 kb on - strand, within Dshi_3968 at 31.221 kb on - strand, within Dshi_3968 at 31.401 kb on - strand, within Dshi_3968 at 31.407 kb on - strand, within Dshi_3968 at 31.420 kb on + strand, within Dshi_3968 at 31.433 kb on - strand, within Dshi_3968 at 31.434 kb on - strand, within Dshi_3968 at 31.458 kb on + strand, within Dshi_3968 at 31.523 kb on + strand, within Dshi_3968 at 31.531 kb on - strand, within Dshi_3968 at 31.531 kb on - strand, within Dshi_3968 at 31.538 kb on - strand, within Dshi_3968 at 31.622 kb on + strand, within Dshi_3968 at 31.622 kb on + strand, within Dshi_3968 at 31.636 kb on + strand, within Dshi_3968 at 31.644 kb on - strand, within Dshi_3968 at 31.644 kb on - strand, within Dshi_3968 at 31.721 kb on + strand at 31.721 kb on + strand at 31.745 kb on - strand at 31.888 kb on - strand at 31.921 kb on - strand, within Dshi_3969 at 31.992 kb on + strand, within Dshi_3969 at 31.997 kb on + strand, within Dshi_3969 at 32.000 kb on - strand, within Dshi_3969 at 32.015 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.017 kb on - strand, within Dshi_3969 at 32.033 kb on - strand, within Dshi_3969 at 32.068 kb on - strand, within Dshi_3969 at 32.070 kb on + strand, within Dshi_3969 at 32.078 kb on - strand, within Dshi_3969 at 32.084 kb on + strand, within Dshi_3969 at 32.089 kb on + strand, within Dshi_3969 at 32.102 kb on + strand at 32.108 kb on + strand at 32.116 kb on - strand at 32.135 kb on + strand at 32.162 kb on - strand at 32.185 kb on - strand at 32.192 kb on + strand at 32.242 kb on + strand at 32.242 kb on + strand at 32.261 kb on - strand at 32.310 kb on + strand at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.318 kb on - strand, within Dshi_3970 at 32.364 kb on - strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.367 kb on + strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.375 kb on - strand, within Dshi_3970 at 32.382 kb on - strand, within Dshi_3970 at 32.382 kb on - strand, within Dshi_3970 at 32.433 kb on - strand, within Dshi_3970 at 32.469 kb on + strand, within Dshi_3970 at 32.469 kb on + strand, within Dshi_3970 at 32.476 kb on - strand, within Dshi_3970 at 32.486 kb on + strand, within Dshi_3970 at 32.489 kb on - strand, within Dshi_3970 at 32.489 kb on - strand, within Dshi_3970 at 32.642 kb on + strand at 32.644 kb on + strand at 32.652 kb on - strand at 32.652 kb on - strand at 32.652 kb on - strand at 32.664 kb on - strand at 32.686 kb on - strand at 32.730 kb on + strand, within Dshi_3971 at 32.730 kb on + strand, within Dshi_3971
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 29,885 - Dshi_3966 0.47 +0.8 29,887 + Dshi_3966 0.47 -0.2 29,920 - Dshi_3966 0.51 -0.0 29,920 - Dshi_3966 0.51 -1.0 29,920 - Dshi_3966 0.51 +0.4 29,920 - Dshi_3966 0.51 -0.2 29,920 - Dshi_3966 0.51 +1.8 29,920 - Dshi_3966 0.51 +0.1 29,920 - Dshi_3966 0.51 -0.3 29,921 + Dshi_3966 0.52 -0.0 29,929 - Dshi_3966 0.53 +1.5 29,938 - Dshi_3966 0.54 -1.1 29,942 + Dshi_3966 0.54 +0.0 29,952 + Dshi_3966 0.56 -0.5 29,952 + Dshi_3966 0.56 +1.4 29,952 + Dshi_3966 0.56 +1.2 29,952 + Dshi_3966 0.56 -0.2 29,960 - Dshi_3966 0.57 -0.6 29,960 - Dshi_3966 0.57 +0.4 29,960 - Dshi_3966 0.57 -3.0 29,960 - Dshi_3966 0.57 +0.1 29,960 - Dshi_3966 0.57 -0.6 29,960 - Dshi_3966 0.57 -0.2 29,960 - Dshi_3966 0.57 +0.3 29,960 - Dshi_3966 0.57 -1.4 29,960 - Dshi_3966 0.57 -0.0 29,960 - Dshi_3966 0.57 -0.1 29,960 - Dshi_3966 0.57 +0.3 29,960 - Dshi_3966 0.57 -0.4 29,960 - Dshi_3966 0.57 +0.4 29,962 + Dshi_3966 0.57 +1.0 29,962 + Dshi_3966 0.57 +1.4 29,962 + Dshi_3966 0.57 -1.6 29,962 + Dshi_3966 0.57 +0.1 29,962 + Dshi_3966 0.57 -0.2 29,962 + Dshi_3966 0.57 +0.3 29,962 + Dshi_3966 0.57 -0.8 29,962 + Dshi_3966 0.57 -0.6 29,962 + Dshi_3966 0.57 +0.6 29,962 + Dshi_3966 0.57 -0.2 29,970 - Dshi_3966 0.58 -0.2 29,970 - Dshi_3966 0.58 -0.1 29,970 - Dshi_3966 0.58 -0.3 29,970 - Dshi_3966 0.58 +0.3 29,970 - Dshi_3966 0.58 -0.5 29,970 - Dshi_3966 0.58 -0.6 29,970 - Dshi_3966 0.58 -0.4 29,970 - Dshi_3966 0.58 -0.5 29,977 + Dshi_3966 0.59 -0.6 29,993 + Dshi_3966 0.61 +0.8 30,000 + Dshi_3966 0.62 +2.2 30,000 + Dshi_3966 0.62 +2.2 30,046 + Dshi_3966 0.68 -1.1 30,046 + Dshi_3966 0.68 -2.7 30,054 - Dshi_3966 0.69 +0.4 30,054 - Dshi_3966 0.69 +0.3 30,057 + Dshi_3966 0.70 -0.3 30,092 + Dshi_3966 0.74 -1.1 30,100 - Dshi_3966 0.76 +1.1 30,105 - Dshi_3966 0.76 +0.6 30,120 + Dshi_3966 0.78 -0.3 30,149 + Dshi_3966 0.82 +1.2 30,156 + Dshi_3966 0.83 +0.1 30,185 + Dshi_3966 0.87 +0.4 30,208 + -1.5 30,214 - -0.4 30,216 - -0.5 30,216 - -0.2 30,218 + -0.7 30,223 + +0.7 30,226 - +0.4 30,255 + -0.7 30,268 - +0.1 30,268 - +0.8 30,270 + +1.2 30,287 + -0.4 30,287 + +1.8 30,287 + +0.6 30,287 + -0.5 30,287 + +0.7 30,287 + +0.1 30,287 + +1.4 30,287 + -0.2 30,287 + -0.3 30,295 - +0.3 30,295 - -1.7 30,295 - -0.9 30,308 + +0.1 30,313 + +0.6 30,316 - +0.1 30,318 + +0.2 30,318 + -0.1 30,320 + +0.2 30,321 - +0.5 30,326 - +0.3 30,332 + -0.9 30,332 + -0.3 30,332 + +1.0 30,332 + -0.3 30,335 - -0.0 30,335 - +0.4 30,335 - +1.3 30,335 - -0.9 30,352 + +0.1 30,366 + -2.0 30,373 + -0.3 30,386 + +0.3 30,403 - -1.2 30,425 - +0.4 30,438 - +0.6 30,476 + +0.8 30,485 - +0.2 30,492 + +0.5 30,492 + +2.2 30,527 + Dshi_3967 0.16 -0.5 30,616 + Dshi_3967 0.41 -0.4 30,616 + Dshi_3967 0.41 +0.4 30,628 - Dshi_3967 0.45 -0.3 30,646 - Dshi_3967 0.50 +0.0 30,697 - Dshi_3967 0.64 -0.0 30,697 - Dshi_3967 0.64 +0.1 30,700 + Dshi_3967 0.65 -0.4 30,701 - Dshi_3967 0.66 +0.8 30,713 - Dshi_3967 0.69 +0.6 30,754 - Dshi_3967 0.81 -1.9 30,770 + Dshi_3967 0.85 -0.2 30,778 - Dshi_3967 0.87 +0.4 30,890 - -0.2 30,890 - -0.7 30,948 + +0.2 30,948 + +0.4 30,948 + -0.4 30,948 + +0.4 30,948 + -0.5 30,948 + +0.1 30,948 + -0.2 30,956 - +0.2 30,956 - -0.4 30,956 - +0.7 30,995 + Dshi_3968 0.13 -0.8 30,997 + Dshi_3968 0.13 +0.5 30,997 + Dshi_3968 0.13 +0.2 31,005 - Dshi_3968 0.14 +0.3 31,008 + Dshi_3968 0.14 +1.3 31,016 - Dshi_3968 0.15 +0.7 31,016 - Dshi_3968 0.15 +0.6 31,018 + Dshi_3968 0.16 -0.5 31,033 + Dshi_3968 0.17 +0.4 31,043 + Dshi_3968 0.19 -0.2 31,043 + Dshi_3968 0.19 -0.0 31,043 + Dshi_3968 0.19 +0.2 31,043 + Dshi_3968 0.19 +1.1 31,051 - Dshi_3968 0.19 +0.4 31,132 - Dshi_3968 0.29 +0.3 31,133 + Dshi_3968 0.29 -0.3 31,135 + Dshi_3968 0.29 +1.4 31,143 - Dshi_3968 0.30 +0.3 31,221 - Dshi_3968 0.39 -0.2 31,401 - Dshi_3968 0.61 +0.3 31,407 - Dshi_3968 0.61 -0.4 31,420 + Dshi_3968 0.63 +0.6 31,433 - Dshi_3968 0.64 -1.3 31,434 - Dshi_3968 0.64 -1.0 31,458 + Dshi_3968 0.67 -0.5 31,523 + Dshi_3968 0.75 +0.1 31,531 - Dshi_3968 0.76 +0.4 31,531 - Dshi_3968 0.76 +0.4 31,538 - Dshi_3968 0.77 +0.4 31,622 + Dshi_3968 0.87 -0.4 31,622 + Dshi_3968 0.87 +2.1 31,636 + Dshi_3968 0.88 +0.6 31,644 - Dshi_3968 0.89 +0.4 31,644 - Dshi_3968 0.89 +0.2 31,721 + -0.6 31,721 + +0.8 31,745 - +0.1 31,888 - +0.0 31,921 - Dshi_3969 0.11 -0.2 31,992 + Dshi_3969 0.42 -0.9 31,997 + Dshi_3969 0.44 +1.4 32,000 - Dshi_3969 0.45 -0.0 32,015 - Dshi_3969 0.52 -1.0 32,017 - Dshi_3969 0.53 +0.8 32,017 - Dshi_3969 0.53 +0.0 32,017 - Dshi_3969 0.53 +1.4 32,017 - Dshi_3969 0.53 +0.1 32,017 - Dshi_3969 0.53 -0.2 32,017 - Dshi_3969 0.53 -0.5 32,033 - Dshi_3969 0.60 +0.6 32,068 - Dshi_3969 0.75 -0.7 32,070 + Dshi_3969 0.76 -0.7 32,078 - Dshi_3969 0.79 +1.3 32,084 + Dshi_3969 0.82 -0.0 32,089 + Dshi_3969 0.84 +0.2 32,102 + -2.0 32,108 + -1.1 32,116 - -1.0 32,135 + +0.1 32,162 - -0.2 32,185 - +0.2 32,192 + -0.1 32,242 + +0.6 32,242 + +1.3 32,261 - +0.1 32,310 + -0.0 32,318 - Dshi_3970 0.10 -0.6 32,318 - Dshi_3970 0.10 -0.6 32,318 - Dshi_3970 0.10 +0.2 32,318 - Dshi_3970 0.10 +0.4 32,364 - Dshi_3970 0.28 +0.0 32,367 + Dshi_3970 0.29 +0.6 32,367 + Dshi_3970 0.29 +0.8 32,367 + Dshi_3970 0.29 -0.2 32,367 + Dshi_3970 0.29 +1.3 32,367 + Dshi_3970 0.29 +0.6 32,367 + Dshi_3970 0.29 -0.1 32,367 + Dshi_3970 0.29 +0.4 32,375 - Dshi_3970 0.32 +0.4 32,375 - Dshi_3970 0.32 +0.7 32,375 - Dshi_3970 0.32 -0.3 32,375 - Dshi_3970 0.32 +0.4 32,375 - Dshi_3970 0.32 +0.2 32,375 - Dshi_3970 0.32 -0.4 32,375 - Dshi_3970 0.32 -0.0 32,382 - Dshi_3970 0.35 +0.1 32,382 - Dshi_3970 0.35 -1.5 32,433 - Dshi_3970 0.55 -1.2 32,469 + Dshi_3970 0.69 -0.7 32,469 + Dshi_3970 0.69 +0.2 32,476 - Dshi_3970 0.71 +0.5 32,486 + Dshi_3970 0.75 +1.0 32,489 - Dshi_3970 0.76 +0.1 32,489 - Dshi_3970 0.76 -0.7 32,642 + -0.3 32,644 + +0.3 32,652 - -1.2 32,652 - +0.0 32,652 - -0.2 32,664 - +0.8 32,686 - -0.2 32,730 + Dshi_3971 0.17 +0.2 32,730 + Dshi_3971 0.17 -2.9
Or see this region's nucleotide sequence