Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0465

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0463 and Dshi_0464 are separated by 23 nucleotidesDshi_0464 and Dshi_0465 are separated by 45 nucleotidesDshi_0465 and Dshi_0466 are separated by 12 nucleotides Dshi_0463: Dshi_0463 - transposase IS3/IS911 family protein (RefSeq), at 449,156 to 449,422 _0463 Dshi_0464: Dshi_0464 - Integrase catalytic region (RefSeq), at 449,446 to 450,267 _0464 Dshi_0465: Dshi_0465 - two component transcriptional regulator, LuxR family (RefSeq), at 450,313 to 451,032 _0465 Dshi_0466: Dshi_0466 - domain of unknown function DUF1745 (RefSeq), at 451,045 to 452,202 _0466 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 450.296 kb on + strandat 450.304 kb on - strandat 450.320 kb on + strandat 450.382 kb on + strandat 450.394 kb on - strand, within Dshi_0465at 450.427 kb on + strand, within Dshi_0465at 450.483 kb on - strand, within Dshi_0465at 450.672 kb on - strand, within Dshi_0465at 450.745 kb on + strand, within Dshi_0465at 450.910 kb on - strand, within Dshi_0465at 450.937 kb on - strand, within Dshi_0465at 450.942 kb on + strand, within Dshi_0465at 450.947 kb on + strand, within Dshi_0465at 450.975 kb on + strandat 451.018 kb on + strandat 451.057 kb on - strandat 451.105 kb on + strandat 451.105 kb on + strandat 451.110 kb on + strandat 451.118 kb on - strandat 451.162 kb on - strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.210 kb on + strand, within Dshi_0466at 451.220 kb on - strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.222 kb on + strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.230 kb on - strand, within Dshi_0466at 451.240 kb on + strand, within Dshi_0466at 451.248 kb on - strand, within Dshi_0466at 451.250 kb on + strand, within Dshi_0466at 451.281 kb on - strand, within Dshi_0466at 451.313 kb on + strand, within Dshi_0466at 451.340 kb on - strand, within Dshi_0466at 451.340 kb on - strand, within Dshi_0466at 451.369 kb on - strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.383 kb on + strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.391 kb on - strand, within Dshi_0466at 451.437 kb on - strand, within Dshi_0466at 451.439 kb on + strand, within Dshi_0466at 451.440 kb on + strand, within Dshi_0466at 451.452 kb on - strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.463 kb on + strand, within Dshi_0466at 451.548 kb on + strand, within Dshi_0466at 451.548 kb on - strand, within Dshi_0466at 451.578 kb on + strand, within Dshi_0466at 451.583 kb on + strand, within Dshi_0466at 451.586 kb on - strand, within Dshi_0466at 451.628 kb on - strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.681 kb on + strand, within Dshi_0466at 451.697 kb on + strand, within Dshi_0466at 451.697 kb on - strand, within Dshi_0466at 451.718 kb on - strand, within Dshi_0466at 451.720 kb on - strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.728 kb on + strand, within Dshi_0466at 451.736 kb on - strand, within Dshi_0466at 451.736 kb on - strand, within Dshi_0466at 451.780 kb on - strand, within Dshi_0466at 451.780 kb on - strand, within Dshi_0466at 451.800 kb on + strand, within Dshi_0466at 451.808 kb on - strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.814 kb on + strand, within Dshi_0466at 451.815 kb on + strand, within Dshi_0466at 451.822 kb on - strand, within Dshi_0466at 451.822 kb on - strand, within Dshi_0466at 451.823 kb on - strand, within Dshi_0466at 451.840 kb on + strand, within Dshi_0466at 451.851 kb on - strand, within Dshi_0466at 451.878 kb on - strand, within Dshi_0466at 451.882 kb on - strand, within Dshi_0466at 451.912 kb on + strand, within Dshi_0466at 451.926 kb on - strand, within Dshi_0466at 451.956 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.985 kb on + strand, within Dshi_0466at 451.993 kb on - strand, within Dshi_0466at 451.993 kb on - strand, within Dshi_0466at 452.026 kb on + strand, within Dshi_0466

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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450,296 + -0.8
450,304 - -0.3
450,320 + -1.7
450,382 + -0.6
450,394 - Dshi_0465 0.11 -0.2
450,427 + Dshi_0465 0.16 -0.2
450,483 - Dshi_0465 0.24 -1.3
450,672 - Dshi_0465 0.50 -0.6
450,745 + Dshi_0465 0.60 +0.2
450,910 - Dshi_0465 0.83 +0.5
450,937 - Dshi_0465 0.87 -1.0
450,942 + Dshi_0465 0.87 -0.2
450,947 + Dshi_0465 0.88 -2.1
450,975 + +0.1
451,018 + +0.2
451,057 - -0.3
451,105 + -0.1
451,105 + +0.3
451,110 + -2.3
451,118 - -0.1
451,162 - Dshi_0466 0.10 -0.2
451,210 + Dshi_0466 0.14 +0.5
451,210 + Dshi_0466 0.14 +0.0
451,220 - Dshi_0466 0.15 -0.1
451,222 + Dshi_0466 0.15 +0.2
451,222 + Dshi_0466 0.15 +0.1
451,230 - Dshi_0466 0.16 -0.1
451,230 - Dshi_0466 0.16 -0.2
451,230 - Dshi_0466 0.16 -0.7
451,230 - Dshi_0466 0.16 +0.8
451,230 - Dshi_0466 0.16 -0.9
451,230 - Dshi_0466 0.16 +0.2
451,230 - Dshi_0466 0.16 -0.0
451,230 - Dshi_0466 0.16 -0.8
451,240 + Dshi_0466 0.17 +0.6
451,248 - Dshi_0466 0.18 +0.5
451,250 + Dshi_0466 0.18 -0.0
451,281 - Dshi_0466 0.20 +1.1
451,313 + Dshi_0466 0.23 -0.2
451,340 - Dshi_0466 0.25 +0.7
451,340 - Dshi_0466 0.25 -0.6
451,369 - Dshi_0466 0.28 +0.5
451,383 + Dshi_0466 0.29 +0.4
451,383 + Dshi_0466 0.29 +0.8
451,383 + Dshi_0466 0.29 +1.5
451,383 + Dshi_0466 0.29 -0.1
451,383 + Dshi_0466 0.29 +0.1
451,383 + Dshi_0466 0.29 -0.2
451,383 + Dshi_0466 0.29 -0.9
451,383 + Dshi_0466 0.29 -0.1
451,383 + Dshi_0466 0.29 +0.0
451,383 + Dshi_0466 0.29 +0.4
451,383 + Dshi_0466 0.29 +0.2
451,383 + Dshi_0466 0.29 -0.5
451,383 + Dshi_0466 0.29 -0.0
451,391 - Dshi_0466 0.30 -0.4
451,391 - Dshi_0466 0.30 +0.9
451,391 - Dshi_0466 0.30 -0.0
451,391 - Dshi_0466 0.30 -0.2
451,391 - Dshi_0466 0.30 +0.4
451,391 - Dshi_0466 0.30 +1.1
451,391 - Dshi_0466 0.30 +0.3
451,391 - Dshi_0466 0.30 +0.1
451,391 - Dshi_0466 0.30 -0.5
451,391 - Dshi_0466 0.30 -0.5
451,391 - Dshi_0466 0.30 +0.2
451,391 - Dshi_0466 0.30 +0.2
451,391 - Dshi_0466 0.30 +0.2
451,437 - Dshi_0466 0.34 +0.5
451,439 + Dshi_0466 0.34 -0.1
451,440 + Dshi_0466 0.34 +0.6
451,452 - Dshi_0466 0.35 +0.1
451,463 + Dshi_0466 0.36 -0.2
451,463 + Dshi_0466 0.36 -0.3
451,463 + Dshi_0466 0.36 -0.1
451,548 + Dshi_0466 0.43 +1.2
451,548 - Dshi_0466 0.43 -1.3
451,578 + Dshi_0466 0.46 -0.3
451,583 + Dshi_0466 0.46 +0.2
451,586 - Dshi_0466 0.47 -0.2
451,628 - Dshi_0466 0.50 +0.2
451,681 + Dshi_0466 0.55 -0.8
451,681 + Dshi_0466 0.55 -0.8
451,681 + Dshi_0466 0.55 +2.2
451,697 + Dshi_0466 0.56 -0.3
451,697 - Dshi_0466 0.56 +0.1
451,718 - Dshi_0466 0.58 +0.5
451,720 - Dshi_0466 0.58 +0.7
451,728 + Dshi_0466 0.59 +1.0
451,728 + Dshi_0466 0.59 +0.7
451,728 + Dshi_0466 0.59 -0.2
451,728 + Dshi_0466 0.59 +0.0
451,728 + Dshi_0466 0.59 +0.2
451,736 - Dshi_0466 0.60 -0.7
451,736 - Dshi_0466 0.60 +0.4
451,780 - Dshi_0466 0.63 +0.5
451,780 - Dshi_0466 0.63 -0.5
451,800 + Dshi_0466 0.65 -0.8
451,808 - Dshi_0466 0.66 -0.9
451,814 + Dshi_0466 0.66 -0.7
451,814 + Dshi_0466 0.66 -1.0
451,814 + Dshi_0466 0.66 -0.3
451,815 + Dshi_0466 0.66 -0.3
451,822 - Dshi_0466 0.67 +0.1
451,822 - Dshi_0466 0.67 +0.4
451,823 - Dshi_0466 0.67 -0.3
451,840 + Dshi_0466 0.69 +0.7
451,851 - Dshi_0466 0.70 +0.1
451,878 - Dshi_0466 0.72 -1.8
451,882 - Dshi_0466 0.72 +0.6
451,912 + Dshi_0466 0.75 +0.3
451,926 - Dshi_0466 0.76 +0.2
451,956 + Dshi_0466 0.79 -0.6
451,985 + Dshi_0466 0.81 -0.4
451,985 + Dshi_0466 0.81 -0.1
451,985 + Dshi_0466 0.81 -0.2
451,985 + Dshi_0466 0.81 -0.0
451,985 + Dshi_0466 0.81 -0.6
451,985 + Dshi_0466 0.81 +0.0
451,993 - Dshi_0466 0.82 -1.0
451,993 - Dshi_0466 0.82 -0.0
452,026 + Dshi_0466 0.85 +0.1

Or see this region's nucleotide sequence