Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0126

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0125 and Dshi_0126 are separated by 103 nucleotidesDshi_0126 and Dshi_0127 overlap by 4 nucleotidesDshi_0127 and Dshi_0128 are separated by 118 nucleotides Dshi_0125: Dshi_0125 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 122,863 to 124,881 _0125 Dshi_0126: Dshi_0126 - hypothetical protein (RefSeq), at 124,985 to 125,401 _0126 Dshi_0127: Dshi_0127 - hypothetical protein (RefSeq), at 125,398 to 126,168 _0127 Dshi_0128: Dshi_0128 - hypothetical protein (RefSeq), at 126,287 to 126,946 _0128 Position (kb) 124 125 126Strain fitness (log2 ratio) -1 0 1at 124.106 kb on + strand, within Dshi_0125at 124.200 kb on + strand, within Dshi_0125at 124.314 kb on - strand, within Dshi_0125at 124.409 kb on - strand, within Dshi_0125at 124.449 kb on + strand, within Dshi_0125at 124.556 kb on + strand, within Dshi_0125at 124.645 kb on - strand, within Dshi_0125at 124.660 kb on - strand, within Dshi_0125at 124.756 kb on - strandat 124.920 kb on + strandat 124.928 kb on - strandat 124.936 kb on - strandat 124.952 kb on - strandat 125.062 kb on - strand, within Dshi_0126at 125.095 kb on + strand, within Dshi_0126at 125.125 kb on - strand, within Dshi_0126at 125.198 kb on + strand, within Dshi_0126at 125.283 kb on - strand, within Dshi_0126at 125.761 kb on - strand, within Dshi_0127at 125.911 kb on + strand, within Dshi_0127at 126.121 kb on - strandat 126.155 kb on - strandat 126.181 kb on + strandat 126.212 kb on - strandat 126.277 kb on - strandat 126.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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124,106 + Dshi_0125 0.62 -0.1
124,200 + Dshi_0125 0.66 -0.3
124,314 - Dshi_0125 0.72 +0.8
124,409 - Dshi_0125 0.77 +0.6
124,449 + Dshi_0125 0.79 -0.3
124,556 + Dshi_0125 0.84 +0.1
124,645 - Dshi_0125 0.88 +0.6
124,660 - Dshi_0125 0.89 -1.0
124,756 - -0.6
124,920 + -0.3
124,928 - -0.1
124,936 - -0.7
124,952 - +0.6
125,062 - Dshi_0126 0.18 +0.3
125,095 + Dshi_0126 0.26 +1.2
125,125 - Dshi_0126 0.34 +0.4
125,198 + Dshi_0126 0.51 +0.5
125,283 - Dshi_0126 0.71 +0.4
125,761 - Dshi_0127 0.47 +0.1
125,911 + Dshi_0127 0.67 -0.2
126,121 - -0.0
126,155 - +0.1
126,181 + -0.3
126,212 - -0.7
126,277 - -0.1
126,278 - +0.2

Or see this region's nucleotide sequence