Experiment: nitrate 0.125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_577 and Pf6N2E2_578 are separated by 61 nucleotides Pf6N2E2_578 and Pf6N2E2_579 overlap by 4 nucleotides Pf6N2E2_579 and Pf6N2E2_580 are separated by 787 nucleotides
Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641
_577
Pf6N2E2_578 - Mobile element protein, at 653,703 to 654,038
_578
Pf6N2E2_579 - FIG00962753: hypothetical protein, at 654,035 to 654,229
_579
Pf6N2E2_580 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 655,017 to 655,811
_580
Position (kb) 653
654
655 Strain fitness (log2 ratio) -1
0
1
2
3 at 652.785 kb on + strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.786 kb on - strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.797 kb on + strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.798 kb on - strand, within Pf6N2E2_577 at 652.861 kb on + strand, within Pf6N2E2_577 at 653.046 kb on - strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.259 kb on - strand, within Pf6N2E2_577 at 653.459 kb on + strand at 653.460 kb on - strand, within Pf6N2E2_577 at 653.573 kb on + strand at 653.574 kb on - strand at 653.588 kb on + strand at 653.611 kb on + strand at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 654.053 kb on + strand at 654.054 kb on - strand at 654.178 kb on + strand, within Pf6N2E2_579 at 654.179 kb on - strand, within Pf6N2E2_579 at 654.381 kb on - strand at 654.388 kb on + strand at 654.388 kb on + strand at 654.447 kb on + strand at 654.468 kb on + strand at 654.469 kb on - strand at 654.469 kb on - strand at 654.865 kb on + strand at 654.866 kb on - strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.925 kb on + strand at 654.925 kb on + strand at 654.926 kb on - strand at 654.936 kb on - strand at 654.936 kb on - strand at 654.936 kb on - strand at 655.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 0.125 M remove 652,785 + Pf6N2E2_577 0.45 +1.1 652,786 - Pf6N2E2_577 0.45 +0.9 652,786 - Pf6N2E2_577 0.45 +0.1 652,797 + Pf6N2E2_577 0.46 +1.0 652,797 + Pf6N2E2_577 0.46 +0.6 652,797 + Pf6N2E2_577 0.46 -0.5 652,798 - Pf6N2E2_577 0.46 +0.3 652,798 - Pf6N2E2_577 0.46 +1.0 652,861 + Pf6N2E2_577 0.50 +0.4 653,046 - Pf6N2E2_577 0.62 -0.3 653,172 + Pf6N2E2_577 0.70 +1.8 653,172 + Pf6N2E2_577 0.70 -0.8 653,173 - Pf6N2E2_577 0.70 +0.7 653,173 - Pf6N2E2_577 0.70 -0.3 653,173 - Pf6N2E2_577 0.70 +0.1 653,259 - Pf6N2E2_577 0.76 -1.1 653,459 + +3.1 653,460 - Pf6N2E2_577 0.88 -0.1 653,573 + -0.4 653,574 - -0.5 653,588 + +1.9 653,611 + -0.1 653,920 + Pf6N2E2_578 0.65 -1.3 653,920 + Pf6N2E2_578 0.65 +1.2 653,920 + Pf6N2E2_578 0.65 -1.0 653,920 + Pf6N2E2_578 0.65 -1.0 653,920 + Pf6N2E2_578 0.65 +1.0 653,920 + Pf6N2E2_578 0.65 -0.2 653,921 - Pf6N2E2_578 0.65 -1.5 653,921 - Pf6N2E2_578 0.65 -0.4 654,053 + +0.2 654,054 - -0.1 654,178 + Pf6N2E2_579 0.73 +0.5 654,179 - Pf6N2E2_579 0.74 -0.1 654,381 - +0.5 654,388 + +1.0 654,388 + +0.7 654,447 + -0.8 654,468 + -1.0 654,469 - +1.4 654,469 - +0.3 654,865 + +0.9 654,866 - -0.4 654,873 + +0.2 654,873 + +0.9 654,873 + -1.0 654,873 + +1.2 654,873 + +0.6 654,873 + +0.2 654,873 + -0.1 654,925 + -0.4 654,925 + -1.0 654,926 - +0.3 654,936 - -0.4 654,936 - +0.1 654,936 - +0.7 655,018 + +1.2
Or see this region's nucleotide sequence