Experiment: nitrate 0.125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4740 and Pf6N2E2_4741 are separated by 32 nucleotides Pf6N2E2_4741 and Pf6N2E2_4742 are separated by 22 nucleotides Pf6N2E2_4742 and Pf6N2E2_4743 are separated by 80 nucleotides Pf6N2E2_4743 and Pf6N2E2_4744 overlap by 4 nucleotides
Pf6N2E2_4740 - Inner membrane protein CreD, at 5,477,197 to 5,478,570
_4740
Pf6N2E2_4741 - hypothetical protein, at 5,478,603 to 5,478,731
_4741
Pf6N2E2_4742 - Glutathione S-transferase family protein, at 5,478,754 to 5,479,383
_4742
Pf6N2E2_4743 - hypothetical protein, at 5,479,464 to 5,479,643
_4743
Pf6N2E2_4744 - putative iron-regulated membrane protein, at 5,479,640 to 5,480,770
_4744
Position (kb) 5479
5480 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5478.619 kb on + strand, within Pf6N2E2_4741 at 5478.620 kb on - strand, within Pf6N2E2_4741 at 5478.620 kb on - strand, within Pf6N2E2_4741 at 5478.626 kb on + strand, within Pf6N2E2_4741 at 5478.626 kb on + strand, within Pf6N2E2_4741 at 5478.627 kb on - strand, within Pf6N2E2_4741 at 5478.627 kb on - strand, within Pf6N2E2_4741 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.704 kb on + strand, within Pf6N2E2_4741 at 5478.705 kb on - strand, within Pf6N2E2_4741 at 5478.705 kb on - strand, within Pf6N2E2_4741 at 5478.834 kb on + strand, within Pf6N2E2_4742 at 5478.834 kb on + strand, within Pf6N2E2_4742 at 5478.835 kb on - strand, within Pf6N2E2_4742 at 5479.019 kb on - strand, within Pf6N2E2_4742 at 5479.415 kb on - strand at 5479.419 kb on + strand at 5479.605 kb on - strand, within Pf6N2E2_4743 at 5479.705 kb on - strand at 5479.705 kb on - strand at 5479.705 kb on - strand at 5479.780 kb on - strand, within Pf6N2E2_4744 at 5479.824 kb on + strand, within Pf6N2E2_4744 at 5479.824 kb on + strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5479.825 kb on - strand, within Pf6N2E2_4744 at 5480.271 kb on + strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.272 kb on - strand, within Pf6N2E2_4744 at 5480.449 kb on + strand, within Pf6N2E2_4744 at 5480.449 kb on + strand, within Pf6N2E2_4744 at 5480.450 kb on - strand, within Pf6N2E2_4744
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 0.125 M remove 5,478,619 + Pf6N2E2_4741 0.12 -0.6 5,478,620 - Pf6N2E2_4741 0.13 -2.8 5,478,620 - Pf6N2E2_4741 0.13 +1.3 5,478,626 + Pf6N2E2_4741 0.18 +0.2 5,478,626 + Pf6N2E2_4741 0.18 +0.1 5,478,627 - Pf6N2E2_4741 0.19 +1.4 5,478,627 - Pf6N2E2_4741 0.19 -1.0 5,478,704 + Pf6N2E2_4741 0.78 -0.1 5,478,704 + Pf6N2E2_4741 0.78 +0.4 5,478,704 + Pf6N2E2_4741 0.78 +0.2 5,478,705 - Pf6N2E2_4741 0.79 +0.9 5,478,705 - Pf6N2E2_4741 0.79 +0.7 5,478,834 + Pf6N2E2_4742 0.13 +0.2 5,478,834 + Pf6N2E2_4742 0.13 +0.3 5,478,835 - Pf6N2E2_4742 0.13 +0.6 5,479,019 - Pf6N2E2_4742 0.42 -1.5 5,479,415 - -0.7 5,479,419 + +0.4 5,479,605 - Pf6N2E2_4743 0.78 -0.5 5,479,705 - -0.6 5,479,705 - +0.2 5,479,705 - +0.9 5,479,780 - Pf6N2E2_4744 0.12 -1.0 5,479,824 + Pf6N2E2_4744 0.16 -0.1 5,479,824 + Pf6N2E2_4744 0.16 +0.2 5,479,825 - Pf6N2E2_4744 0.16 +0.4 5,479,825 - Pf6N2E2_4744 0.16 -0.5 5,479,825 - Pf6N2E2_4744 0.16 -0.9 5,480,271 + Pf6N2E2_4744 0.56 +1.1 5,480,272 - Pf6N2E2_4744 0.56 +1.6 5,480,272 - Pf6N2E2_4744 0.56 -0.7 5,480,272 - Pf6N2E2_4744 0.56 -1.0 5,480,449 + Pf6N2E2_4744 0.72 -0.7 5,480,449 + Pf6N2E2_4744 0.72 +0.3 5,480,450 - Pf6N2E2_4744 0.72 -0.8
Or see this region's nucleotide sequence