Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4480

Experiment: nitrate 0.125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4477 and Pf6N2E2_4478 overlap by 4 nucleotidesPf6N2E2_4478 and Pf6N2E2_4479 are separated by 129 nucleotidesPf6N2E2_4479 and Pf6N2E2_4480 are separated by 25 nucleotidesPf6N2E2_4480 and Pf6N2E2_4481 overlap by 4 nucleotides Pf6N2E2_4477 - Z-ring-associated protein ZapA, at 5,210,071 to 5,210,388 _4477 Pf6N2E2_4478 - FIG019278: hypothetical protein, at 5,210,385 to 5,210,594 _4478 Pf6N2E2_4479 - FIG001590: Putative conserved exported protein precursor, at 5,210,724 to 5,211,278 _4479 Pf6N2E2_4480 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 5,211,304 to 5,212,638 _4480 Pf6N2E2_4481 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 5,212,635 to 5,213,822 _4481 Position (kb) 5211 5212 5213Strain fitness (log2 ratio) -2 -1 0 1 2at 5210.314 kb on - strand, within Pf6N2E2_4477at 5210.314 kb on - strand, within Pf6N2E2_4477at 5210.314 kb on - strand, within Pf6N2E2_4477at 5210.343 kb on - strand, within Pf6N2E2_4477at 5210.343 kb on - strand, within Pf6N2E2_4477at 5210.374 kb on - strandat 5210.435 kb on + strand, within Pf6N2E2_4478at 5210.502 kb on + strand, within Pf6N2E2_4478at 5210.502 kb on + strand, within Pf6N2E2_4478at 5210.503 kb on - strand, within Pf6N2E2_4478at 5210.503 kb on - strand, within Pf6N2E2_4478at 5210.503 kb on - strand, within Pf6N2E2_4478at 5210.505 kb on + strand, within Pf6N2E2_4478at 5210.505 kb on + strand, within Pf6N2E2_4478at 5210.505 kb on + strand, within Pf6N2E2_4478at 5210.505 kb on + strand, within Pf6N2E2_4478at 5210.505 kb on + strand, within Pf6N2E2_4478at 5210.506 kb on - strand, within Pf6N2E2_4478at 5210.506 kb on - strand, within Pf6N2E2_4478at 5210.506 kb on - strand, within Pf6N2E2_4478at 5210.506 kb on - strand, within Pf6N2E2_4478at 5210.525 kb on + strand, within Pf6N2E2_4478at 5210.525 kb on + strand, within Pf6N2E2_4478at 5210.525 kb on + strand, within Pf6N2E2_4478at 5210.525 kb on + strand, within Pf6N2E2_4478at 5210.525 kb on + strand, within Pf6N2E2_4478at 5210.526 kb on - strand, within Pf6N2E2_4478at 5210.526 kb on - strand, within Pf6N2E2_4478at 5210.547 kb on + strand, within Pf6N2E2_4478at 5210.547 kb on + strand, within Pf6N2E2_4478at 5210.548 kb on - strand, within Pf6N2E2_4478at 5210.548 kb on - strand, within Pf6N2E2_4478at 5210.548 kb on - strand, within Pf6N2E2_4478at 5210.548 kb on - strand, within Pf6N2E2_4478at 5210.548 kb on - strand, within Pf6N2E2_4478at 5210.628 kb on - strandat 5210.628 kb on - strandat 5210.648 kb on + strandat 5210.671 kb on + strandat 5210.672 kb on - strandat 5210.676 kb on + strandat 5210.676 kb on + strandat 5210.692 kb on + strandat 5210.692 kb on + strandat 5210.692 kb on + strandat 5210.692 kb on + strandat 5210.698 kb on + strandat 5210.698 kb on + strandat 5210.698 kb on + strandat 5210.698 kb on + strandat 5210.698 kb on + strandat 5210.698 kb on + strandat 5210.745 kb on + strandat 5210.745 kb on + strandat 5211.180 kb on + strand, within Pf6N2E2_4479at 5211.198 kb on + strand, within Pf6N2E2_4479at 5211.199 kb on - strand, within Pf6N2E2_4479at 5211.276 kb on + strandat 5211.328 kb on + strandat 5211.328 kb on + strandat 5211.328 kb on + strandat 5211.457 kb on + strand, within Pf6N2E2_4480at 5211.457 kb on + strand, within Pf6N2E2_4480at 5211.523 kb on + strand, within Pf6N2E2_4480at 5211.523 kb on + strand, within Pf6N2E2_4480at 5211.523 kb on + strand, within Pf6N2E2_4480at 5211.607 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.952 kb on + strand, within Pf6N2E2_4480at 5211.952 kb on + strand, within Pf6N2E2_4480at 5211.988 kb on + strand, within Pf6N2E2_4480at 5211.988 kb on + strand, within Pf6N2E2_4480at 5212.033 kb on + strand, within Pf6N2E2_4480at 5212.033 kb on + strand, within Pf6N2E2_4480at 5212.105 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.172 kb on - strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.267 kb on - strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 0.125 M
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5,210,314 - Pf6N2E2_4477 0.76 +0.8
5,210,314 - Pf6N2E2_4477 0.76 +0.8
5,210,314 - Pf6N2E2_4477 0.76 +0.6
5,210,343 - Pf6N2E2_4477 0.86 -1.0
5,210,343 - Pf6N2E2_4477 0.86 -0.2
5,210,374 - +0.3
5,210,435 + Pf6N2E2_4478 0.24 +1.1
5,210,502 + Pf6N2E2_4478 0.56 +0.8
5,210,502 + Pf6N2E2_4478 0.56 +0.6
5,210,503 - Pf6N2E2_4478 0.56 +0.6
5,210,503 - Pf6N2E2_4478 0.56 +0.9
5,210,503 - Pf6N2E2_4478 0.56 -0.2
5,210,505 + Pf6N2E2_4478 0.57 -2.7
5,210,505 + Pf6N2E2_4478 0.57 -0.9
5,210,505 + Pf6N2E2_4478 0.57 -0.5
5,210,505 + Pf6N2E2_4478 0.57 -0.1
5,210,505 + Pf6N2E2_4478 0.57 +0.2
5,210,506 - Pf6N2E2_4478 0.58 +0.1
5,210,506 - Pf6N2E2_4478 0.58 -0.6
5,210,506 - Pf6N2E2_4478 0.58 -0.6
5,210,506 - Pf6N2E2_4478 0.58 -2.0
5,210,525 + Pf6N2E2_4478 0.67 -0.7
5,210,525 + Pf6N2E2_4478 0.67 -0.0
5,210,525 + Pf6N2E2_4478 0.67 +0.9
5,210,525 + Pf6N2E2_4478 0.67 -0.4
5,210,525 + Pf6N2E2_4478 0.67 -0.8
5,210,526 - Pf6N2E2_4478 0.67 -0.2
5,210,526 - Pf6N2E2_4478 0.67 -0.3
5,210,547 + Pf6N2E2_4478 0.77 -0.7
5,210,547 + Pf6N2E2_4478 0.77 +0.3
5,210,548 - Pf6N2E2_4478 0.78 -1.7
5,210,548 - Pf6N2E2_4478 0.78 -0.8
5,210,548 - Pf6N2E2_4478 0.78 +0.0
5,210,548 - Pf6N2E2_4478 0.78 -0.7
5,210,548 - Pf6N2E2_4478 0.78 +1.1
5,210,628 - +0.6
5,210,628 - -1.4
5,210,648 + -0.6
5,210,671 + -0.6
5,210,672 - +1.2
5,210,676 + +1.8
5,210,676 + +0.1
5,210,692 + +0.1
5,210,692 + -1.6
5,210,692 + +0.6
5,210,692 + +1.8
5,210,698 + +1.1
5,210,698 + -1.5
5,210,698 + +0.6
5,210,698 + -0.5
5,210,698 + +0.6
5,210,698 + +0.3
5,210,745 + +0.0
5,210,745 + +0.4
5,211,180 + Pf6N2E2_4479 0.82 +0.6
5,211,198 + Pf6N2E2_4479 0.85 -0.1
5,211,199 - Pf6N2E2_4479 0.86 +0.6
5,211,276 + +0.8
5,211,328 + +0.8
5,211,328 + +0.0
5,211,328 + +0.8
5,211,457 + Pf6N2E2_4480 0.11 -0.3
5,211,457 + Pf6N2E2_4480 0.11 -1.4
5,211,523 + Pf6N2E2_4480 0.16 -0.9
5,211,523 + Pf6N2E2_4480 0.16 +0.3
5,211,523 + Pf6N2E2_4480 0.16 -0.2
5,211,607 + Pf6N2E2_4480 0.23 +0.1
5,211,685 + Pf6N2E2_4480 0.29 -1.0
5,211,685 + Pf6N2E2_4480 0.29 +0.9
5,211,685 + Pf6N2E2_4480 0.29 +1.8
5,211,685 + Pf6N2E2_4480 0.29 -1.1
5,211,826 + Pf6N2E2_4480 0.39 +0.5
5,211,826 + Pf6N2E2_4480 0.39 +0.8
5,211,826 + Pf6N2E2_4480 0.39 -0.2
5,211,828 + Pf6N2E2_4480 0.39 -0.2
5,211,828 + Pf6N2E2_4480 0.39 -0.7
5,211,828 + Pf6N2E2_4480 0.39 +0.2
5,211,828 + Pf6N2E2_4480 0.39 +1.3
5,211,828 + Pf6N2E2_4480 0.39 +0.1
5,211,828 + Pf6N2E2_4480 0.39 -0.1
5,211,952 + Pf6N2E2_4480 0.49 -0.6
5,211,952 + Pf6N2E2_4480 0.49 +0.5
5,211,988 + Pf6N2E2_4480 0.51 +0.2
5,211,988 + Pf6N2E2_4480 0.51 +0.7
5,212,033 + Pf6N2E2_4480 0.55 -0.2
5,212,033 + Pf6N2E2_4480 0.55 +0.5
5,212,105 + Pf6N2E2_4480 0.60 +0.7
5,212,171 + Pf6N2E2_4480 0.65 +0.3
5,212,171 + Pf6N2E2_4480 0.65 +0.4
5,212,171 + Pf6N2E2_4480 0.65 +1.4
5,212,171 + Pf6N2E2_4480 0.65 +0.1
5,212,172 - Pf6N2E2_4480 0.65 +1.0
5,212,266 + Pf6N2E2_4480 0.72 -0.1
5,212,266 + Pf6N2E2_4480 0.72 -0.5
5,212,266 + Pf6N2E2_4480 0.72 -1.2
5,212,267 - Pf6N2E2_4480 0.72 +0.8
5,212,345 + Pf6N2E2_4480 0.78 +1.6
5,212,345 + Pf6N2E2_4480 0.78 +0.1
5,212,345 + Pf6N2E2_4480 0.78 +0.1
5,212,345 + Pf6N2E2_4480 0.78 +0.0
5,212,345 + Pf6N2E2_4480 0.78 +1.3
5,212,465 + Pf6N2E2_4480 0.87 -1.2
5,212,465 + Pf6N2E2_4480 0.87 +0.5
5,212,465 + Pf6N2E2_4480 0.87 -0.3
5,212,465 + Pf6N2E2_4480 0.87 -1.3
5,212,465 + Pf6N2E2_4480 0.87 +0.3
5,212,465 + Pf6N2E2_4480 0.87 -2.0
5,212,465 + Pf6N2E2_4480 0.87 +1.6
5,212,465 + Pf6N2E2_4480 0.87 +0.9
5,212,465 + Pf6N2E2_4480 0.87 -0.6
5,212,465 + Pf6N2E2_4480 0.87 -0.1
5,212,465 + Pf6N2E2_4480 0.87 +0.8
5,212,465 + Pf6N2E2_4480 0.87 -0.1
5,212,465 + Pf6N2E2_4480 0.87 +0.7
5,212,465 + Pf6N2E2_4480 0.87 -1.7
5,212,538 + +0.7

Or see this region's nucleotide sequence