Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18605

Experiment: Temperature shift 30_to_4; with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_4; with MOPS
4,209,985	+				+0.0
4,209,985	+				+0.7
4,209,985	+				-0.3
4,209,985	+				+0.2
4,209,985	+				+0.0
4,209,986	-				-1.1
4,209,986	-				+2.5
4,209,986	-				-0.5
4,210,197	+		PFLU_RS18600	0.51	+0.2
4,210,258	-		PFLU_RS18600	0.66	+0.6
4,210,304	+		PFLU_RS18600	0.77	-1.1
4,210,304	+		PFLU_RS18600	0.77	+1.1
4,210,304	+		PFLU_RS18600	0.77	-0.1
4,210,304	+		PFLU_RS18600	0.77	+0.2
4,210,304	+		PFLU_RS18600	0.77	-0.8
4,210,305	-		PFLU_RS18600	0.77	+0.7
4,210,305	-		PFLU_RS18600	0.77	+0.5
4,210,305	-		PFLU_RS18600	0.77	+0.7
4,210,305	-		PFLU_RS18600	0.77	-1.4
4,210,305	-		PFLU_RS18600	0.77	+0.3
4,210,305	-		PFLU_RS18600	0.77	+0.2
4,210,305	-		PFLU_RS18600	0.77	+0.0
4,210,305	-		PFLU_RS18600	0.77	-2.4
4,210,305	-		PFLU_RS18600	0.77	-0.8
4,210,305	-		PFLU_RS18600	0.77	-1.9
4,210,305	-		PFLU_RS18600	0.77	-0.2
4,210,305	-		PFLU_RS18600	0.77	-0.7
4,210,319	+		PFLU_RS18600	0.80	+0.1
4,210,319	+		PFLU_RS18600	0.80	+0.8
4,210,320	-		PFLU_RS18600	0.80	+0.3
4,210,384	+				+0.5
4,210,469	+				-1.8
4,210,469	+				-1.3
4,210,469	+				+2.3
4,210,469	+				-0.3
4,210,469	+				-0.4
4,210,469	+				+0.7
4,210,469	+				-0.5
4,210,469	+				+0.3
4,210,469	+				+1.3
4,210,469	+				+0.2
4,210,469	+				+0.3
4,210,470	-				-0.3
4,210,470	-				-0.1
4,210,470	-				-0.3
4,210,470	-				+0.3
4,210,470	-				-0.1
4,210,470	-				+0.6
4,210,470	-				-1.8
4,210,470	-				+0.7
4,210,470	-				+0.1
4,210,470	-				+0.5
4,210,559	+				-0.3
4,210,559	+				-1.5
4,210,559	+				-1.7
4,210,560	-				+0.0
4,210,560	-				+0.6
4,210,600	+				-0.1
4,210,601	-				+0.7
4,210,624	+				-0.7
4,210,624	+				-0.8
4,210,764	-		PFLU_RS18605	0.18	+1.6
4,210,764	-		PFLU_RS18605	0.18	-0.8
4,210,947	+		PFLU_RS18605	0.43	+0.6
4,210,947	+		PFLU_RS18605	0.43	+0.5
4,210,948	-		PFLU_RS18605	0.43	+0.7
4,211,061	+		PFLU_RS18605	0.58	+0.3
4,211,061	+		PFLU_RS18605	0.58	+1.3
4,211,061	+		PFLU_RS18605	0.58	+1.3
4,211,061	+		PFLU_RS18605	0.58	+2.3
4,211,062	-		PFLU_RS18605	0.58	-1.1
4,211,062	-		PFLU_RS18605	0.58	+0.4
4,211,062	-		PFLU_RS18605	0.58	+1.5
4,211,062	-		PFLU_RS18605	0.58	-1.0
4,211,089	-		PFLU_RS18605	0.62	-1.1
4,211,112	+		PFLU_RS18605	0.65	+0.6
4,211,112	+		PFLU_RS18605	0.65	+0.0
4,211,112	+		PFLU_RS18605	0.65	+0.5
4,211,112	+		PFLU_RS18605	0.65	+2.3
4,211,113	-		PFLU_RS18605	0.65	+0.0
4,211,113	-		PFLU_RS18605	0.65	-1.0
4,211,113	-		PFLU_RS18605	0.65	-0.8
4,211,113	-		PFLU_RS18605	0.65	+1.5
4,211,113	-		PFLU_RS18605	0.65	-2.0
4,211,149	+		PFLU_RS18605	0.70	-0.5
4,211,149	+		PFLU_RS18605	0.70	-1.1
4,211,150	-		PFLU_RS18605	0.70	-0.8
4,211,150	-		PFLU_RS18605	0.70	+0.2
4,211,150	-		PFLU_RS18605	0.70	-0.8
4,211,198	-		PFLU_RS18605	0.77	+0.9
4,211,198	-		PFLU_RS18605	0.77	+0.2
4,211,198	-		PFLU_RS18605	0.77	+0.5
4,211,198	-		PFLU_RS18605	0.77	-0.7
4,211,298	-				+0.6
4,211,298	-				+0.2
4,211,311	-				+0.1
4,211,311	-				-1.8
4,211,311	-				-0.3
4,211,311	-				-0.6
4,211,311	-				+0.3
4,211,311	-				+0.8
4,211,311	-				+0.2
4,211,311	-				-2.4
4,211,316	-				-0.6
4,211,316	-				+0.1
4,211,412	+				+2.1
4,211,433	-				+0.1
4,211,485	+				-1.1
4,211,620	+				+0.3
4,211,621	-				+0.5
4,211,629	-				-1.7
4,211,637	+				+0.5
4,211,637	+				-1.0
4,211,638	-				+1.1
4,211,654	+				+0.0
4,211,654	+				-0.4
4,211,654	+				-0.4
4,211,655	-				+0.1
4,211,655	-				-2.6
4,211,767	+				+1.1
4,211,767	+				-0.2
4,211,767	+				+0.2
4,211,767	+				+0.5
4,211,767	+				-0.4
4,211,767	+				+0.2
4,211,767	+				-0.5
4,211,767	+				-0.5
4,211,767	+				+0.1
4,211,767	+				+2.3
4,211,767	+				+0.7
4,211,768	-				+1.1
4,211,768	-				-0.1
4,211,768	-				+1.9
4,211,768	-				+1.3
4,211,768	-				+0.9
4,211,768	-				-0.5
4,211,768	-				-0.6
4,211,768	-				+2.9
4,211,768	-				+0.5
4,211,768	-				+0.7
4,211,826	+				+0.7
4,211,826	+				-1.1
4,211,944	-				+0.2
4,211,944	-				-0.3
4,212,124	+		PFLU_RS18610	0.20	-0.1
4,212,124	+		PFLU_RS18610	0.20	+0.9
4,212,124	+		PFLU_RS18610	0.20	-1.2
4,212,125	-		PFLU_RS18610	0.20	-0.1
4,212,125	-		PFLU_RS18610	0.20	-0.1
4,212,147	+		PFLU_RS18610	0.22	-0.8
4,212,147	+		PFLU_RS18610	0.22	+1.1
4,212,147	+		PFLU_RS18610	0.22	-0.8
4,212,147	+		PFLU_RS18610	0.22	-1.8
4,212,147	+		PFLU_RS18610	0.22	-0.3
4,212,147	+		PFLU_RS18610	0.22	+0.3
4,212,147	+		PFLU_RS18610	0.22	+0.1
4,212,147	+		PFLU_RS18610	0.22	+2.6
4,212,147	+		PFLU_RS18610	0.22	+0.8
4,212,147	+		PFLU_RS18610	0.22	-0.5
4,212,147	+		PFLU_RS18610	0.22	+0.3
4,212,147	+		PFLU_RS18610	0.22	-0.7
4,212,148	-		PFLU_RS18610	0.22	-0.7
4,212,148	-		PFLU_RS18610	0.22	-1.4
4,212,148	-		PFLU_RS18610	0.22	-0.1
4,212,148	-		PFLU_RS18610	0.22	+1.3
4,212,148	-		PFLU_RS18610	0.22	-0.6
4,212,148	-		PFLU_RS18610	0.22	+0.0
4,212,148	-		PFLU_RS18610	0.22	+0.2
4,212,198	+		PFLU_RS18610	0.26	+1.5
4,212,198	+		PFLU_RS18610	0.26	+1.0
4,212,198	+		PFLU_RS18610	0.26	+0.0
4,212,198	+		PFLU_RS18610	0.26	+0.3
4,212,199	-		PFLU_RS18610	0.26	+1.2
4,212,199	-		PFLU_RS18610	0.26	-0.3
4,212,199	-		PFLU_RS18610	0.26	+0.7
4,212,199	-		PFLU_RS18610	0.26	+1.3
4,212,199	-		PFLU_RS18610	0.26	+0.3
4,212,199	-		PFLU_RS18610	0.26	+1.8
4,212,199	-		PFLU_RS18610	0.26	+0.3
4,212,321	+		PFLU_RS18610	0.35	-0.1
4,212,321	+		PFLU_RS18610	0.35	+0.9
4,212,321	+		PFLU_RS18610	0.35	+1.8
4,212,322	-		PFLU_RS18610	0.35	-0.6
4,212,322	-		PFLU_RS18610	0.35	+0.3
4,212,322	-		PFLU_RS18610	0.35	+0.1
4,212,322	-		PFLU_RS18610	0.35	-0.6
4,212,322	-		PFLU_RS18610	0.35	+2.1
4,212,322	-		PFLU_RS18610	0.35	+0.9
4,212,322	-		PFLU_RS18610	0.35	-0.3
4,212,330	+		PFLU_RS18610	0.36	+0.0
4,212,331	-		PFLU_RS18610	0.36	-0.1
4,212,331	-		PFLU_RS18610	0.36	-1.7