Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04850

Experiment: Formate with sodium chlorite 1.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04845 and MMP_RS04850 are separated by 275 nucleotidesMMP_RS04850 and MMP_RS04855 are separated by 5 nucleotidesMMP_RS04855 and MMP_RS04860 are separated by 16 nucleotides MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158 _RS04845 MMP_RS04850: MMP_RS04850 - UPF0254 family protein, at 923,434 to 923,931 _RS04850 MMP_RS04855: MMP_RS04855 - shikimate dehydrogenase, at 923,937 to 924,773 _RS04855 MMP_RS04860: MMP_RS04860 - coenzyme F420-0:L-glutamate ligase, at 924,790 to 925,536 _RS04860 Position (kb) 923 924Strain fitness (log2 ratio) -3 -2 -1 0 1at 922.469 kb on - strand, within MMP_RS04845at 922.570 kb on - strand, within MMP_RS04845at 922.601 kb on + strand, within MMP_RS04845at 922.637 kb on - strand, within MMP_RS04845at 922.806 kb on + strand, within MMP_RS04845at 922.869 kb on + strand, within MMP_RS04845at 922.915 kb on + strand, within MMP_RS04845at 922.988 kb on - strand, within MMP_RS04845at 923.098 kb on - strandat 923.099 kb on + strandat 923.206 kb on + strandat 923.217 kb on - strandat 923.217 kb on - strandat 923.217 kb on - strandat 923.220 kb on - strandat 923.221 kb on + strandat 923.232 kb on - strandat 923.233 kb on + strandat 923.249 kb on + strandat 923.262 kb on - strandat 923.263 kb on + strandat 923.267 kb on + strandat 923.268 kb on - strandat 923.298 kb on - strandat 923.299 kb on + strandat 923.310 kb on + strandat 923.313 kb on - strandat 923.328 kb on - strandat 923.333 kb on - strandat 923.339 kb on - strandat 923.348 kb on + strandat 923.357 kb on - strandat 923.357 kb on - strandat 923.357 kb on - strandat 923.361 kb on - strandat 923.376 kb on - strandat 923.379 kb on - strandat 923.379 kb on - strandat 923.379 kb on - strandat 923.382 kb on + strandat 923.392 kb on - strandat 923.397 kb on + strandat 923.415 kb on + strandat 923.422 kb on + strandat 923.536 kb on - strand, within MMP_RS04850at 923.536 kb on - strand, within MMP_RS04850at 923.537 kb on + strand, within MMP_RS04850at 923.541 kb on - strand, within MMP_RS04850at 923.542 kb on + strand, within MMP_RS04850at 923.558 kb on - strand, within MMP_RS04850at 923.558 kb on - strand, within MMP_RS04850at 923.558 kb on - strand, within MMP_RS04850at 923.558 kb on - strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.559 kb on + strand, within MMP_RS04850at 923.560 kb on - strand, within MMP_RS04850at 923.560 kb on - strand, within MMP_RS04850at 923.560 kb on - strand, within MMP_RS04850at 923.560 kb on - strand, within MMP_RS04850at 923.560 kb on - strand, within MMP_RS04850at 923.561 kb on + strand, within MMP_RS04850at 923.561 kb on + strand, within MMP_RS04850at 923.561 kb on + strand, within MMP_RS04850at 923.564 kb on - strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.565 kb on + strand, within MMP_RS04850at 923.612 kb on - strand, within MMP_RS04850at 923.663 kb on + strand, within MMP_RS04850at 923.664 kb on - strand, within MMP_RS04850at 923.665 kb on + strand, within MMP_RS04850at 923.681 kb on - strand, within MMP_RS04850at 923.696 kb on - strand, within MMP_RS04850at 923.733 kb on - strand, within MMP_RS04850at 923.779 kb on + strand, within MMP_RS04850at 923.784 kb on + strand, within MMP_RS04850at 923.791 kb on - strand, within MMP_RS04850at 923.791 kb on - strand, within MMP_RS04850at 923.801 kb on + strand, within MMP_RS04850at 923.801 kb on + strand, within MMP_RS04850at 923.801 kb on + strand, within MMP_RS04850at 923.817 kb on - strand, within MMP_RS04850at 923.818 kb on + strand, within MMP_RS04850at 923.822 kb on + strand, within MMP_RS04850at 923.832 kb on + strand, within MMP_RS04850at 923.849 kb on - strand, within MMP_RS04850at 923.850 kb on + strand, within MMP_RS04850at 923.850 kb on + strand, within MMP_RS04850at 923.850 kb on + strand, within MMP_RS04850at 923.885 kb on + strandat 923.885 kb on + strandat 923.885 kb on + strandat 923.887 kb on + strandat 923.887 kb on + strandat 923.887 kb on + strandat 923.889 kb on - strandat 923.890 kb on + strandat 923.890 kb on + strandat 923.890 kb on + strandat 923.890 kb on + strandat 923.960 kb on + strandat 924.032 kb on - strandat 924.091 kb on - strandat 924.238 kb on - strandat 924.243 kb on - strandat 924.243 kb on - strandat 924.246 kb on + strandat 924.435 kb on + strandat 924.502 kb on - strandat 924.503 kb on + strandat 924.513 kb on + strandat 924.558 kb on + strandat 924.683 kb on + strandat 924.725 kb on + strandat 924.756 kb on + strandat 924.819 kb on + strandat 924.876 kb on - strandat 924.908 kb on - strandat 924.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with sodium chlorite 1.6 mM
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922,469 - MMP_RS04845 0.34 +0.0
922,570 - MMP_RS04845 0.44 +0.1
922,601 + MMP_RS04845 0.47 +0.0
922,637 - MMP_RS04845 0.50 -0.8
922,806 + MMP_RS04845 0.66 -0.3
922,869 + MMP_RS04845 0.72 +0.1
922,915 + MMP_RS04845 0.77 -0.1
922,988 - MMP_RS04845 0.84 +0.3
923,098 - +0.6
923,099 + -0.3
923,206 + +0.1
923,217 - -0.1
923,217 - +0.0
923,217 - +0.0
923,220 - -0.0
923,221 + +0.8
923,232 - -0.1
923,233 + -0.0
923,249 + +0.4
923,262 - +0.4
923,263 + +0.3
923,267 + +0.4
923,268 - +0.3
923,298 - +0.4
923,299 + -0.2
923,310 + +0.6
923,313 - +0.3
923,328 - +0.2
923,333 - +0.5
923,339 - -0.6
923,348 + +0.2
923,357 - +0.5
923,357 - +0.2
923,357 - +0.5
923,361 - -0.5
923,376 - +0.0
923,379 - +0.2
923,379 - +0.0
923,379 - +0.1
923,382 + -0.4
923,392 - +0.0
923,397 + +0.1
923,415 + +0.3
923,422 + -0.3
923,536 - MMP_RS04850 0.20 +0.5
923,536 - MMP_RS04850 0.20 -0.8
923,537 + MMP_RS04850 0.21 -0.7
923,541 - MMP_RS04850 0.21 +0.4
923,542 + MMP_RS04850 0.22 -0.8
923,558 - MMP_RS04850 0.25 -0.2
923,558 - MMP_RS04850 0.25 -1.1
923,558 - MMP_RS04850 0.25 -0.5
923,558 - MMP_RS04850 0.25 -0.8
923,559 + MMP_RS04850 0.25 -0.5
923,559 + MMP_RS04850 0.25 -1.0
923,559 + MMP_RS04850 0.25 -0.7
923,559 + MMP_RS04850 0.25 -0.9
923,559 + MMP_RS04850 0.25 -0.0
923,559 + MMP_RS04850 0.25 -0.5
923,559 + MMP_RS04850 0.25 -0.4
923,559 + MMP_RS04850 0.25 -0.0
923,559 + MMP_RS04850 0.25 -0.3
923,560 - MMP_RS04850 0.25 -1.7
923,560 - MMP_RS04850 0.25 -1.0
923,560 - MMP_RS04850 0.25 +0.0
923,560 - MMP_RS04850 0.25 -0.6
923,560 - MMP_RS04850 0.25 -0.9
923,561 + MMP_RS04850 0.26 -1.0
923,561 + MMP_RS04850 0.26 -0.3
923,561 + MMP_RS04850 0.26 -0.6
923,564 - MMP_RS04850 0.26 -0.6
923,565 + MMP_RS04850 0.26 -0.4
923,565 + MMP_RS04850 0.26 -0.7
923,565 + MMP_RS04850 0.26 -0.9
923,565 + MMP_RS04850 0.26 -0.5
923,565 + MMP_RS04850 0.26 -0.6
923,565 + MMP_RS04850 0.26 -0.6
923,565 + MMP_RS04850 0.26 +0.1
923,612 - MMP_RS04850 0.36 -0.1
923,663 + MMP_RS04850 0.46 -0.8
923,664 - MMP_RS04850 0.46 -0.8
923,665 + MMP_RS04850 0.46 -0.6
923,681 - MMP_RS04850 0.50 -0.8
923,696 - MMP_RS04850 0.53 -0.8
923,733 - MMP_RS04850 0.60 -0.6
923,779 + MMP_RS04850 0.69 -0.2
923,784 + MMP_RS04850 0.70 -0.3
923,791 - MMP_RS04850 0.72 +0.6
923,791 - MMP_RS04850 0.72 -0.4
923,801 + MMP_RS04850 0.74 -0.0
923,801 + MMP_RS04850 0.74 -0.2
923,801 + MMP_RS04850 0.74 -0.1
923,817 - MMP_RS04850 0.77 -1.6
923,818 + MMP_RS04850 0.77 -0.3
923,822 + MMP_RS04850 0.78 -1.1
923,832 + MMP_RS04850 0.80 +0.2
923,849 - MMP_RS04850 0.83 -0.2
923,850 + MMP_RS04850 0.84 -0.2
923,850 + MMP_RS04850 0.84 -1.2
923,850 + MMP_RS04850 0.84 -0.6
923,885 + -0.6
923,885 + -0.7
923,885 + -0.1
923,887 + -0.3
923,887 + -0.2
923,887 + -0.0
923,889 - -0.7
923,890 + -0.8
923,890 + -0.5
923,890 + -0.9
923,890 + -0.6
923,960 + -2.1
924,032 - -1.0
924,091 - -2.0
924,238 - -2.4
924,243 - -2.7
924,243 - -1.7
924,246 + -1.6
924,435 + -0.8
924,502 - -2.0
924,503 + -2.1
924,513 + -2.2
924,558 + -2.2
924,683 + -1.7
924,725 + -3.1
924,756 + +0.0
924,819 + -2.5
924,876 - -1.3
924,908 - -0.2
924,911 - -1.0

Or see this region's nucleotide sequence