Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02110

Experiment: Formate with sodium chlorite 1.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02100 and MMP_RS02105 are separated by 58 nucleotidesMMP_RS02105 and MMP_RS02110 are separated by 15 nucleotidesMMP_RS02110 and MMP_RS02115 are separated by 241 nucleotides MMP_RS02100: MMP_RS02100 - metallophosphoesterase, at 391,261 to 391,776 _RS02100 MMP_RS02105: MMP_RS02105 - uroporphyrinogen-III synthase, at 391,835 to 392,569 _RS02105 MMP_RS02110: MMP_RS02110 - hypothetical protein, at 392,585 to 392,863 _RS02110 MMP_RS02115: MMP_RS02115 - phosphopyruvate hydratase, at 393,105 to 394,397 _RS02115 Position (kb) 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1at 391.729 kb on - strandat 391.731 kb on - strandat 391.738 kb on - strandat 391.743 kb on + strandat 391.762 kb on - strandat 391.789 kb on - strandat 391.789 kb on - strandat 391.801 kb on - strandat 391.822 kb on + strandat 391.852 kb on - strandat 391.881 kb on - strandat 391.952 kb on - strandat 391.959 kb on - strandat 392.032 kb on - strandat 392.074 kb on - strandat 392.169 kb on + strandat 392.433 kb on - strandat 392.616 kb on - strand, within MMP_RS02110at 392.616 kb on - strand, within MMP_RS02110at 392.876 kb on - strandat 392.896 kb on + strandat 392.910 kb on + strandat 392.920 kb on + strandat 393.010 kb on - strandat 393.515 kb on - strandat 393.541 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with sodium chlorite 1.6 mM
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391,729 - -0.3
391,731 - -0.2
391,738 - -0.4
391,743 + -0.2
391,762 - -0.4
391,789 - +0.6
391,789 - +0.3
391,801 - +0.4
391,822 + -0.4
391,852 - -0.3
391,881 - -2.8
391,952 - -3.7
391,959 - -3.1
392,032 - -1.2
392,074 - -2.2
392,169 + -0.5
392,433 - -1.8
392,616 - MMP_RS02110 0.11 -1.4
392,616 - MMP_RS02110 0.11 -0.6
392,876 - -0.8
392,896 + -1.8
392,910 + -1.6
392,920 + +0.5
393,010 - +0.6
393,515 - -1.8
393,541 + -0.7

Or see this region's nucleotide sequence