Strain Fitness in Pantoea sp. MT58 around IAI47_18925

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
21,253	+		IAI47_18915	0.89	-1.5
21,253	+		IAI47_18915	0.89	-1.6
21,253	+		IAI47_18915	0.89	-2.0
21,253	+		IAI47_18915	0.89	+1.5
21,253	+		IAI47_18915	0.89	-0.5
21,253	+		IAI47_18915	0.89	-2.3
21,253	+		IAI47_18915	0.89	+2.4
21,253	+		IAI47_18915	0.89	+3.0
21,253	+		IAI47_18915	0.89	+0.1
21,253	+		IAI47_18915	0.89	-1.8
21,253	+		IAI47_18915	0.89	+0.3
21,254	-		IAI47_18915	0.89	+1.7
21,254	-		IAI47_18915	0.89	-2.3
21,254	-		IAI47_18915	0.89	-0.5
21,254	-		IAI47_18915	0.89	+0.2
21,254	-		IAI47_18915	0.89	+0.6
21,254	-		IAI47_18915	0.89	-0.8
21,255	+		IAI47_18915	0.90	-0.2
21,256	-		IAI47_18915	0.90	-2.5
21,321	+				-2.1
21,321	+				+3.1
21,321	+				-2.3
21,321	+				+0.4
21,321	+				-1.0
21,321	+				-3.0
21,321	+				+0.6
21,321	+				-1.9
21,321	+				-0.1
21,322	-				-1.0
21,322	-				+1.4
21,322	-				+0.1
21,322	-				+1.2
21,323	+				+0.2
21,323	+				+1.5
21,323	+				-0.5
21,323	+				+1.0
21,324	-				+2.0
21,324	-				-2.2
21,416	+				+0.7
21,417	-				-0.6
21,421	+				-0.3
21,430	+				-0.8
21,431	-				+0.3
21,446	+				-0.8
21,446	+				-1.5
21,446	+				+2.4
21,446	+				+1.3
21,447	-				+1.3
21,447	-				-3.7
21,447	-				+1.4
21,453	-				+0.9
21,496	+				-2.5
21,497	-				-1.5
21,499	-				-2.3
21,536	+				+0.9
21,536	+				+1.2
21,536	+				+1.3
21,536	+				+0.3
21,537	-				-0.3
21,564	-				+0.5
21,579	+				-2.3
21,580	-				-1.3
21,594	+				+1.8
21,594	+				-0.5
21,595	-				-2.0
21,630	+				-2.7
21,667	+				-1.6
21,745	+				-3.6
21,745	+				+0.4
21,746	-				+0.7
21,746	-				+0.5
21,746	-				-0.8
21,746	-				+3.6
21,763	+		IAI47_18920	0.10	+2.0
21,763	+		IAI47_18920	0.10	+2.3
21,763	+		IAI47_18920	0.10	-1.8
21,764	-		IAI47_18920	0.10	+1.4
21,780	+		IAI47_18920	0.13	-0.2
21,903	+		IAI47_18920	0.34	+1.2
21,937	+		IAI47_18920	0.40	-1.1
21,937	+		IAI47_18920	0.40	-0.8
21,938	-		IAI47_18920	0.40	-0.8
21,961	+		IAI47_18920	0.44	-0.3
21,961	+		IAI47_18920	0.44	-2.2
21,962	-		IAI47_18920	0.44	-1.5
21,962	-		IAI47_18920	0.44	+0.8
21,962	-		IAI47_18920	0.44	-0.4
22,000	+		IAI47_18920	0.50	-1.8
22,000	+		IAI47_18920	0.50	+2.3
22,001	-		IAI47_18920	0.51	+1.3
22,079	+		IAI47_18920	0.64	+1.2
22,079	+		IAI47_18920	0.64	-3.5
22,079	+		IAI47_18920	0.64	+0.1
22,080	-		IAI47_18920	0.64	+0.2
22,080	-		IAI47_18920	0.64	+0.2
22,080	-		IAI47_18920	0.64	-1.3
22,080	-		IAI47_18920	0.64	+3.3
22,080	-		IAI47_18920	0.64	-2.0
22,080	-		IAI47_18920	0.64	-0.2
22,174	+		IAI47_18920	0.80	-1.6
22,174	+		IAI47_18920	0.80	-2.2
22,175	-		IAI47_18920	0.80	+1.2
22,175	-		IAI47_18920	0.80	-1.3
22,204	+		IAI47_18920	0.85	-1.1
22,246	+				-0.2
22,247	-				+0.8
22,310	+				+0.9
22,310	+				+1.7
22,360	+		IAI47_18925	0.13	+2.4
22,360	+		IAI47_18925	0.13	-0.5
22,409	+		IAI47_18925	0.18	-3.3
22,409	+		IAI47_18925	0.18	-1.5
22,409	+		IAI47_18925	0.18	+1.1
22,410	-		IAI47_18925	0.18	+0.8
22,410	-		IAI47_18925	0.18	-0.2
22,410	-		IAI47_18925	0.18	+2.1
22,410	-		IAI47_18925	0.18	+0.4
22,410	-		IAI47_18925	0.18	+0.8
22,431	+		IAI47_18925	0.21	+4.0
22,431	+		IAI47_18925	0.21	+2.7
22,432	-		IAI47_18925	0.21	+2.7
22,432	-		IAI47_18925	0.21	-1.3
22,432	-		IAI47_18925	0.21	-1.5
22,432	-		IAI47_18925	0.21	-0.5
22,434	-		IAI47_18925	0.21	+1.1
22,434	-		IAI47_18925	0.21	+1.3
22,729	-		IAI47_18925	0.54	+0.2
22,729	-		IAI47_18925	0.54	+1.7
22,841	+		IAI47_18925	0.67	-2.1
22,841	+		IAI47_18925	0.67	+2.4
22,842	-		IAI47_18925	0.67	+0.2
22,842	-		IAI47_18925	0.67	-2.4
22,842	-		IAI47_18925	0.67	-1.0
22,845	+		IAI47_18925	0.67	-0.4
22,845	+		IAI47_18925	0.67	+0.5
22,845	+		IAI47_18925	0.67	+1.4
22,845	+		IAI47_18925	0.67	-1.8
22,846	-		IAI47_18925	0.67	-1.2
22,846	-		IAI47_18925	0.67	+0.4
22,918	+		IAI47_18925	0.75	+0.4
22,919	-		IAI47_18925	0.75	-0.5
22,925	+		IAI47_18925	0.76	+1.6
22,926	-		IAI47_18925	0.76	+2.1
22,926	-		IAI47_18925	0.76	+3.0
22,926	-		IAI47_18925	0.76	-0.5
23,132	+				-2.4
23,132	+				-1.6
23,132	+				-1.5
23,149	+				-2.2
23,197	+				+3.1
23,203	+				-2.4
23,203	+				+0.7
23,203	+				+0.8
23,204	-				+2.3
23,204	-				-0.8
23,204	-				-3.0
23,204	-				+0.6
23,204	-				+1.1
23,204	-				-1.5
23,204	-				-0.5
23,204	-				-0.8
23,318	+		IAI47_18930	0.27	+3.2
23,318	+		IAI47_18930	0.27	+1.7
23,319	-		IAI47_18930	0.27	+2.6
23,319	-		IAI47_18930	0.27	-0.8
23,468	+		IAI47_18930	0.76	-1.6
23,468	+		IAI47_18930	0.76	-0.2
23,469	-		IAI47_18930	0.76	+1.9
23,469	-		IAI47_18930	0.76	+0.5
23,469	-		IAI47_18930	0.76	-0.1
23,485	-		IAI47_18930	0.82	-1.5
23,485	-		IAI47_18930	0.82	+0.8
23,485	-		IAI47_18930	0.82	+0.8
23,531	+				+2.3
23,573	+				-2.5
23,574	-				+2.8
23,593	+		IAI47_18935	0.14	-2.8
23,594	-		IAI47_18935	0.14	-3.0
23,607	+		IAI47_18935	0.17	-1.2
23,607	+		IAI47_18935	0.17	+0.1
23,607	+		IAI47_18935	0.17	+2.5
23,607	+		IAI47_18935	0.17	-1.9
23,608	-		IAI47_18935	0.17	+0.7
23,608	-		IAI47_18935	0.17	-1.2
23,608	-		IAI47_18935	0.17	-0.8
23,695	-		IAI47_18935	0.40	-0.5
23,701	+		IAI47_18935	0.41	+0.5
23,708	+		IAI47_18935	0.43	-1.3
23,708	+		IAI47_18935	0.43	+1.1
23,709	-		IAI47_18935	0.43	-1.7
23,709	-		IAI47_18935	0.43	-1.0
23,709	-		IAI47_18935	0.43	+1.6
23,795	+		IAI47_18935	0.65	-1.2
23,795	+		IAI47_18935	0.65	+1.8
23,860	+		IAI47_18935	0.82	-1.2
23,860	+		IAI47_18935	0.82	-2.2
23,860	+		IAI47_18935	0.82	-0.5
23,861	-		IAI47_18935	0.82	+1.2
23,925	+				+1.5
23,942	-				-0.1
23,949	+				-3.9
23,965	+				-1.0
23,965	+				+0.9
23,965	+				+1.0
23,965	+				-1.6
23,965	+				+1.5
23,966	-				-2.1
23,970	+				-1.3
23,971	-				+1.5
23,971	-				-2.3
23,971	-				+0.3
24,046	+		IAI47_18940	0.23	-0.8
24,046	+		IAI47_18940	0.23	-2.1
24,046	+		IAI47_18940	0.23	+1.8
24,046	+		IAI47_18940	0.23	-1.8
24,047	-		IAI47_18940	0.23	-1.2
24,047	-		IAI47_18940	0.23	-0.6
24,047	-		IAI47_18940	0.23	-0.1
24,091	+		IAI47_18940	0.31	-0.3
24,091	+		IAI47_18940	0.31	+2.1
24,092	-		IAI47_18940	0.31	+3.8
24,092	-		IAI47_18940	0.31	-2.6
24,103	+		IAI47_18940	0.34	+0.5
24,103	+		IAI47_18940	0.34	+2.1
24,104	-		IAI47_18940	0.34	-2.3
24,104	-		IAI47_18940	0.34	-2.3
24,104	-		IAI47_18940	0.34	+4.2
24,126	+		IAI47_18940	0.38	+1.5
24,127	-		IAI47_18940	0.38	-2.3