Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18860 and IAI47_18865 are separated by 7 nucleotides
IAI47_18860: IAI47_18860 - ParA family protein, at 2,546 to 3,745
_18860
IAI47_18865: IAI47_18865 - ParB/RepB/Spo0J family partition protein, at 3,753 to 4,724
_18865
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3.730 kb on + strand at 4.787 kb on + strand at 4.787 kb on + strand at 4.788 kb on - strand at 4.788 kb on - strand at 4.788 kb on - strand at 4.919 kb on + strand at 4.919 kb on + strand at 4.920 kb on - strand at 4.920 kb on - strand at 4.920 kb on - strand at 4.920 kb on - strand at 4.920 kb on - strand at 4.920 kb on - strand at 4.932 kb on - strand at 4.932 kb on - strand at 4.932 kb on - strand at 4.978 kb on - strand at 4.993 kb on - strand at 5.000 kb on + strand at 5.002 kb on + strand at 5.002 kb on + strand at 5.002 kb on + strand at 5.003 kb on - strand at 5.003 kb on - strand at 5.008 kb on + strand at 5.052 kb on + strand at 5.052 kb on + strand at 5.052 kb on + strand at 5.053 kb on - strand at 5.053 kb on - strand at 5.084 kb on + strand at 5.085 kb on - strand at 5.087 kb on + strand at 5.087 kb on + strand at 5.118 kb on - strand at 5.136 kb on - strand at 5.142 kb on + strand at 5.143 kb on - strand at 5.143 kb on - strand at 5.185 kb on + strand at 5.187 kb on + strand at 5.322 kb on + strand at 5.323 kb on - strand at 5.372 kb on - strand at 5.424 kb on + strand at 5.438 kb on + strand at 5.438 kb on + strand at 5.438 kb on + strand at 5.438 kb on + strand at 5.439 kb on - strand at 5.439 kb on - strand at 5.439 kb on - strand at 5.439 kb on - strand at 5.439 kb on - strand at 5.467 kb on - strand at 5.472 kb on + strand at 5.473 kb on - strand at 5.486 kb on + strand at 5.486 kb on + strand at 5.547 kb on + strand at 5.547 kb on + strand at 5.548 kb on - strand at 5.548 kb on - strand at 5.548 kb on - strand at 5.548 kb on - strand at 5.556 kb on + strand at 5.556 kb on + strand at 5.557 kb on - strand at 5.557 kb on - strand at 5.557 kb on - strand at 5.557 kb on - strand at 5.561 kb on + strand at 5.561 kb on + strand at 5.561 kb on + strand at 5.562 kb on - strand at 5.579 kb on + strand at 5.579 kb on + strand at 5.580 kb on - strand at 5.586 kb on + strand at 5.586 kb on + strand at 5.587 kb on - strand at 5.600 kb on + strand at 5.601 kb on - strand at 5.601 kb on - strand at 5.601 kb on - strand at 5.601 kb on - strand at 5.622 kb on + strand at 5.624 kb on + strand at 5.625 kb on - strand at 5.639 kb on + strand at 5.639 kb on + strand at 5.639 kb on + strand at 5.672 kb on + strand at 5.672 kb on + strand at 5.672 kb on + strand at 5.673 kb on - strand at 5.673 kb on - strand at 5.673 kb on - strand at 5.673 kb on - strand at 5.673 kb on - strand at 5.673 kb on - strand at 5.685 kb on + strand at 5.686 kb on - strand at 5.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 3,730 + -1.5 4,787 + +1.6 4,787 + +0.2 4,788 - +0.8 4,788 - -0.7 4,788 - +2.2 4,919 + +0.2 4,919 + +1.8 4,920 - -2.6 4,920 - -2.0 4,920 - +2.3 4,920 - -0.2 4,920 - -2.5 4,920 - +1.8 4,932 - -0.4 4,932 - +2.2 4,932 - -0.5 4,978 - +0.7 4,993 - +1.2 5,000 + +0.5 5,002 + -3.2 5,002 + +0.8 5,002 + +3.7 5,003 - -1.3 5,003 - +1.7 5,008 + -2.0 5,052 + -1.6 5,052 + +0.1 5,052 + +1.3 5,053 - +3.0 5,053 - -0.8 5,084 + -2.5 5,085 - -0.6 5,087 + +0.9 5,087 + -1.5 5,118 - -0.8 5,136 - +1.1 5,142 + -1.8 5,143 - -3.3 5,143 - -1.3 5,185 + -1.8 5,187 + +1.2 5,322 + -0.8 5,323 - -1.5 5,372 - +1.2 5,424 + -1.2 5,438 + +2.9 5,438 + -0.8 5,438 + -1.6 5,438 + +0.7 5,439 - +2.2 5,439 - -1.2 5,439 - +0.2 5,439 - -1.0 5,439 - +2.7 5,467 - +2.6 5,472 + +2.5 5,473 - -3.6 5,486 + -2.6 5,486 + -0.8 5,547 + +1.3 5,547 + -2.6 5,548 - -2.2 5,548 - +0.5 5,548 - +0.7 5,548 - -1.3 5,556 + +1.8 5,556 + -1.2 5,557 - +0.7 5,557 - +2.2 5,557 - -1.3 5,557 - +3.0 5,561 + -0.2 5,561 + +1.8 5,561 + -1.8 5,562 - -0.8 5,579 + +2.9 5,579 + -1.2 5,580 - -1.4 5,586 + +0.2 5,586 + -0.8 5,587 - +0.8 5,600 + -1.3 5,601 - +1.8 5,601 - +2.4 5,601 - -1.2 5,601 - +1.5 5,622 + -0.2 5,624 + +2.2 5,625 - -1.0 5,639 + +2.7 5,639 + -2.6 5,639 + +2.4 5,672 + +1.1 5,672 + -0.3 5,672 + +3.9 5,673 - -0.5 5,673 - +3.3 5,673 - -1.0 5,673 - +1.4 5,673 - -1.9 5,673 - -0.5 5,685 + -1.2 5,686 - -0.2 5,686 - -1.9
Or see this region's nucleotide sequence