Strain Fitness in Pantoea sp. MT58 around IAI47_14465

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,055,532	+		IAI47_14460	0.52	+2.7
3,055,532	+		IAI47_14460	0.52	+1.4
3,055,533	-		IAI47_14460	0.52	-0.0
3,055,533	-		IAI47_14460	0.52	-0.8
3,055,569	+		IAI47_14460	0.54	-0.7
3,055,569	+		IAI47_14460	0.54	-0.0
3,055,570	-		IAI47_14460	0.54	+1.8
3,055,570	-		IAI47_14460	0.54	+0.7
3,055,570	-		IAI47_14460	0.54	-0.7
3,055,570	-		IAI47_14460	0.54	+0.3
3,055,570	-		IAI47_14460	0.54	-0.5
3,055,595	+		IAI47_14460	0.55	+1.8
3,055,595	+		IAI47_14460	0.55	+2.0
3,055,595	+		IAI47_14460	0.55	+0.5
3,055,596	-		IAI47_14460	0.55	-1.1
3,055,596	-		IAI47_14460	0.55	+5.2
3,055,596	-		IAI47_14460	0.55	+0.9
3,055,610	+		IAI47_14460	0.56	+2.1
3,055,610	+		IAI47_14460	0.56	-0.7
3,055,611	-		IAI47_14460	0.56	+3.2
3,055,611	-		IAI47_14460	0.56	-0.6
3,055,611	-		IAI47_14460	0.56	-1.8
3,055,620	+		IAI47_14460	0.57	-1.7
3,055,620	+		IAI47_14460	0.57	-2.7
3,055,621	-		IAI47_14460	0.57	+2.0
3,055,621	-		IAI47_14460	0.57	+1.6
3,055,621	-		IAI47_14460	0.57	-1.5
3,055,661	+		IAI47_14460	0.59	-2.0
3,055,661	+		IAI47_14460	0.59	-0.5
3,055,662	-		IAI47_14460	0.59	-1.5
3,055,662	-		IAI47_14460	0.59	-2.6
3,055,662	-		IAI47_14460	0.59	-1.6
3,055,662	-		IAI47_14460	0.59	+3.4
3,055,674	+		IAI47_14460	0.60	-1.8
3,055,674	+		IAI47_14460	0.60	-0.8
3,055,674	+		IAI47_14460	0.60	-1.1
3,055,675	-		IAI47_14460	0.60	+2.7
3,055,675	-		IAI47_14460	0.60	+2.5
3,055,682	+		IAI47_14460	0.60	+0.7
3,055,683	-		IAI47_14460	0.60	-0.5
3,055,683	-		IAI47_14460	0.60	+2.8
3,055,695	-		IAI47_14460	0.61	-2.0
3,055,826	+		IAI47_14460	0.68	+1.3
3,055,826	+		IAI47_14460	0.68	-1.0
3,055,826	+		IAI47_14460	0.68	+0.4
3,055,826	+		IAI47_14460	0.68	+0.3
3,055,905	+		IAI47_14460	0.72	-2.1
3,055,938	+		IAI47_14460	0.74	+2.0
3,055,938	+		IAI47_14460	0.74	+0.3
3,055,938	+		IAI47_14460	0.74	-1.8
3,055,938	+		IAI47_14460	0.74	+2.2
3,055,938	+		IAI47_14460	0.74	+3.3
3,055,938	+		IAI47_14460	0.74	-1.9
3,055,939	-		IAI47_14460	0.74	+1.7
3,055,939	-		IAI47_14460	0.74	-2.5
3,055,939	-		IAI47_14460	0.74	-2.1
3,055,939	-		IAI47_14460	0.74	+1.0
3,055,939	-		IAI47_14460	0.74	+2.3
3,055,939	-		IAI47_14460	0.74	+4.2
3,055,939	-		IAI47_14460	0.74	-2.4
3,055,940	+		IAI47_14460	0.74	-2.7
3,055,940	+		IAI47_14460	0.74	-0.3
3,055,940	+		IAI47_14460	0.74	-0.7
3,055,940	+		IAI47_14460	0.74	-0.1
3,055,940	+		IAI47_14460	0.74	+2.4
3,055,940	+		IAI47_14460	0.74	-1.3
3,055,940	+		IAI47_14460	0.74	+1.1
3,055,941	-		IAI47_14460	0.74	-1.1
3,055,941	-		IAI47_14460	0.74	-0.8
3,055,941	-		IAI47_14460	0.74	-1.0
3,056,019	+		IAI47_14460	0.78	+2.4
3,056,019	+		IAI47_14460	0.78	-0.1
3,056,020	-		IAI47_14460	0.78	-1.5
3,056,020	-		IAI47_14460	0.78	+0.6
3,056,020	-		IAI47_14460	0.78	-1.7
3,056,031	+		IAI47_14460	0.79	-0.5
3,056,031	+		IAI47_14460	0.79	-1.7
3,056,042	+		IAI47_14460	0.79	+4.1
3,056,042	+		IAI47_14460	0.79	+5.2
3,056,043	-		IAI47_14460	0.79	+0.7
3,056,043	-		IAI47_14460	0.79	-0.5
3,056,043	-		IAI47_14460	0.79	-0.5
3,056,043	-		IAI47_14460	0.79	-1.5
3,056,173	-		IAI47_14460	0.86	-1.8
3,056,179	-		IAI47_14460	0.87	-0.5
3,056,203	-		IAI47_14460	0.88	+2.6
3,056,203	-		IAI47_14460	0.88	+0.1
3,056,214	+		IAI47_14460	0.88	+0.8
3,056,215	-		IAI47_14460	0.88	-0.3
3,056,254	+				+0.5
3,056,255	+				-1.2
3,056,255	+				-1.8
3,056,255	+				-0.7
3,056,255	+				-1.7
3,056,256	-				-1.5
3,056,256	-				-1.1
3,056,256	-				+0.9
3,056,256	-				-0.8
3,056,351	+				+2.5
3,056,351	+				+0.3
3,056,386	+				+2.1
3,056,386	+				+0.9
3,056,387	-				+0.2
3,056,387	-				+1.5
3,056,435	-				+0.6
3,056,532	+				-0.0
3,056,532	+				+1.3
3,056,647	-		IAI47_14465	0.19	-0.7
3,056,670	+		IAI47_14465	0.23	+1.6
3,056,670	+		IAI47_14465	0.23	+1.6
3,056,670	+		IAI47_14465	0.23	+2.3
3,056,670	+		IAI47_14465	0.23	-0.8
3,056,670	+		IAI47_14465	0.23	-1.7
3,056,671	-		IAI47_14465	0.23	+1.1
3,056,671	-		IAI47_14465	0.23	-2.4
3,056,671	-		IAI47_14465	0.23	-1.6
3,056,671	-		IAI47_14465	0.23	+0.4
3,056,772	+		IAI47_14465	0.40	-1.8
3,056,823	+		IAI47_14465	0.48	-0.8
3,056,824	-		IAI47_14465	0.48	-1.8
3,056,824	-		IAI47_14465	0.48	-1.8
3,056,863	+		IAI47_14465	0.55	-0.7
3,056,864	-		IAI47_14465	0.55	-1.3
3,056,864	-		IAI47_14465	0.55	-0.7
3,056,864	-		IAI47_14465	0.55	+1.0
3,057,016	+		IAI47_14465	0.80	+2.7
3,057,016	+		IAI47_14465	0.80	-2.4
3,057,017	-		IAI47_14465	0.80	-0.7
3,057,017	-		IAI47_14465	0.80	-1.9
3,057,151	-				-1.4
3,057,151	-				+1.7
3,057,264	+		IAI47_14470	0.38	+2.3
3,057,264	+		IAI47_14470	0.38	-0.7
3,057,265	-		IAI47_14470	0.39	-0.5
3,057,265	-		IAI47_14470	0.39	-1.3
3,057,265	-		IAI47_14470	0.39	-0.3
3,057,265	-		IAI47_14470	0.39	+3.1
3,057,265	-		IAI47_14470	0.39	-2.1
3,057,456	+				+2.3
3,057,457	-				-0.3
3,057,469	-				+2.9
3,057,485	+				-0.0
3,057,486	-				-1.9
3,057,486	-				-0.0
3,057,486	-				+1.0
3,057,486	-				+0.9
3,057,486	-				+1.4
3,057,491	+				-2.1
3,057,492	-				-1.1
3,057,492	-				-0.8
3,057,492	-				+3.5
3,057,492	-				+2.5
3,057,500	-				+1.4
3,057,505	+				+0.4
3,057,505	+				-0.3
3,057,506	-				+1.5
3,057,510	+				+0.3
3,057,511	-				+2.5