Strain Fitness in Pantoea sp. MT58 around IAI47_14425

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,044,304	+		IAI47_14415	0.66	-2.3
3,044,304	+		IAI47_14415	0.66	+1.6
3,044,304	+		IAI47_14415	0.66	-1.4
3,044,305	-		IAI47_14415	0.66	-0.5
3,044,305	-		IAI47_14415	0.66	+0.7
3,044,305	-		IAI47_14415	0.66	-1.9
3,044,305	-		IAI47_14415	0.66	+0.7
3,044,344	+		IAI47_14415	0.71	+0.2
3,044,345	-		IAI47_14415	0.71	-1.4
3,044,401	-		IAI47_14415	0.77	+1.0
3,044,476	+		IAI47_14415	0.86	-3.0
3,044,477	-		IAI47_14415	0.86	-1.5
3,044,514	+				-0.0
3,044,515	-				-1.6
3,044,565	+				+2.4
3,044,565	+				+0.8
3,044,565	+				-0.9
3,044,565	+				-1.3
3,044,565	+				-2.7
3,044,565	+				-1.9
3,044,566	-				-1.9
3,044,591	+				-1.4
3,044,634	-				+0.3
3,044,638	+				-0.0
3,044,639	-				-0.5
3,044,639	-				+3.6
3,044,669	+				+1.3
3,044,683	+				+1.7
3,044,683	+				-0.3
3,044,683	+				-2.6
3,044,683	+				+1.4
3,044,684	-				+1.3
3,044,684	-				-1.9
3,044,705	+				-2.3
3,044,705	+				-1.4
3,044,706	-				+2.8
3,044,706	-				+1.1
3,044,706	-				-0.6
3,044,706	-				-2.1
3,044,714	+				-0.9
3,044,714	+				-2.3
3,044,714	+				+0.9
3,044,715	-				-0.7
3,044,715	-				+0.3
3,044,786	+		IAI47_14420	0.23	+1.3
3,044,786	+		IAI47_14420	0.23	-0.6
3,044,787	-		IAI47_14420	0.23	-3.5
3,044,787	-		IAI47_14420	0.23	-1.0
3,044,787	-		IAI47_14420	0.23	-2.5
3,044,819	+		IAI47_14420	0.30	-2.9
3,044,819	+		IAI47_14420	0.30	-1.0
3,044,819	+		IAI47_14420	0.30	-2.0
3,044,819	+		IAI47_14420	0.30	+0.3
3,044,842	+		IAI47_14420	0.36	-1.4
3,044,843	-		IAI47_14420	0.36	+1.4
3,044,843	-		IAI47_14420	0.36	-1.0
3,044,843	-		IAI47_14420	0.36	+1.6
3,044,856	+		IAI47_14420	0.39	-0.3
3,044,856	+		IAI47_14420	0.39	-1.9
3,044,856	+		IAI47_14420	0.39	+1.0
3,044,857	-		IAI47_14420	0.39	+0.1
3,044,857	-		IAI47_14420	0.39	-1.6
3,044,857	-		IAI47_14420	0.39	-0.5
3,044,857	-		IAI47_14420	0.39	+1.4
3,044,858	+		IAI47_14420	0.39	-2.1
3,044,880	+		IAI47_14420	0.44	+1.9
3,044,881	-		IAI47_14420	0.45	+2.4
3,044,881	-		IAI47_14420	0.45	+2.3
3,044,920	+		IAI47_14420	0.54	-3.0
3,044,920	+		IAI47_14420	0.54	-0.9
3,044,920	+		IAI47_14420	0.54	+2.7
3,044,920	+		IAI47_14420	0.54	+3.2
3,044,920	+		IAI47_14420	0.54	-1.9
3,044,921	-		IAI47_14420	0.54	+0.9
3,044,921	-		IAI47_14420	0.54	+2.7
3,044,948	+		IAI47_14420	0.60	-0.9
3,044,948	+		IAI47_14420	0.60	-2.5
3,044,988	-		IAI47_14420	0.69	+0.7
3,045,013	+		IAI47_14420	0.75	-1.3
3,045,013	+		IAI47_14420	0.75	+0.9
3,045,045	+		IAI47_14420	0.83	-1.0
3,045,045	+		IAI47_14420	0.83	-2.7
3,045,045	+		IAI47_14420	0.83	-0.5
3,045,045	+		IAI47_14420	0.83	+1.1
3,045,046	-		IAI47_14420	0.83	-1.4
3,045,046	-		IAI47_14420	0.83	+4.7
3,045,057	+		IAI47_14420	0.85	-0.3
3,045,057	+		IAI47_14420	0.85	+0.7
3,045,057	+		IAI47_14420	0.85	-1.9
3,045,058	-		IAI47_14420	0.86	-2.2
3,045,058	-		IAI47_14420	0.86	-1.4
3,045,058	-		IAI47_14420	0.86	+1.7
3,045,058	-		IAI47_14420	0.86	-0.5
3,045,095	+				+1.8
3,045,095	+				-1.9
3,045,095	+				+1.6
3,045,118	-				-2.3
3,045,118	-				-1.7
3,045,118	-				-0.5
3,045,118	-				-1.3
3,045,118	-				+0.5
3,045,118	-				+2.6
3,045,163	-				+1.1
3,045,215	+				-1.4
3,045,216	-				-1.3
3,045,219	+				+0.3
3,045,219	+				-2.3
3,045,219	+				+1.6
3,045,219	+				-1.7
3,045,219	+				-3.2
3,045,219	+				+0.6
3,045,219	+				-0.9
3,045,220	-				-0.0
3,045,220	-				+1.3
3,045,302	+				-2.5
3,045,333	+		IAI47_14425	0.10	+0.7
3,045,334	-		IAI47_14425	0.10	-0.8
3,045,407	+		IAI47_14425	0.14	+3.9
3,045,453	-		IAI47_14425	0.17	+2.0
3,045,507	+		IAI47_14425	0.20	+2.5
3,045,507	+		IAI47_14425	0.20	-2.2
3,045,507	+		IAI47_14425	0.20	-2.9
3,045,508	-		IAI47_14425	0.20	-1.3
3,045,567	+		IAI47_14425	0.23	-1.9
3,045,567	+		IAI47_14425	0.23	-1.3
3,045,567	+		IAI47_14425	0.23	+2.1
3,045,568	-		IAI47_14425	0.23	-0.1
3,045,568	-		IAI47_14425	0.23	-2.1
3,045,570	+		IAI47_14425	0.24	+0.7
3,045,570	+		IAI47_14425	0.24	+1.3
3,045,571	-		IAI47_14425	0.24	+0.1
3,045,571	-		IAI47_14425	0.24	+3.3
3,045,571	-		IAI47_14425	0.24	+2.2
3,045,693	+		IAI47_14425	0.31	+0.6
3,045,693	+		IAI47_14425	0.31	+1.4
3,045,694	-		IAI47_14425	0.31	-1.8
3,045,700	-		IAI47_14425	0.31	-0.7
3,045,844	+		IAI47_14425	0.39	-2.9
3,045,955	+		IAI47_14425	0.45	+0.0
3,045,956	-		IAI47_14425	0.45	-0.5
3,045,956	-		IAI47_14425	0.45	+2.7
3,045,956	-		IAI47_14425	0.45	+2.2
3,045,956	-		IAI47_14425	0.45	-0.0
3,045,956	-		IAI47_14425	0.45	+1.8
3,045,956	-		IAI47_14425	0.45	+1.6
3,045,956	-		IAI47_14425	0.45	+4.3
3,045,956	-		IAI47_14425	0.45	+1.2
3,045,956	-		IAI47_14425	0.45	+2.4
3,045,956	-		IAI47_14425	0.45	-0.5
3,045,960	+		IAI47_14425	0.46	+2.3
3,045,960	+		IAI47_14425	0.46	+1.9
3,045,960	+		IAI47_14425	0.46	-2.7
3,045,961	-		IAI47_14425	0.46	-1.0
3,045,961	-		IAI47_14425	0.46	-2.5
3,045,961	-		IAI47_14425	0.46	-2.5
3,045,961	-		IAI47_14425	0.46	+3.4
3,045,961	-		IAI47_14425	0.46	+1.7
3,045,961	-		IAI47_14425	0.46	+1.5
3,045,989	+		IAI47_14425	0.47	+2.0
3,045,989	+		IAI47_14425	0.47	+1.4
3,045,990	-		IAI47_14425	0.47	-1.7
3,045,990	-		IAI47_14425	0.47	-2.4
3,045,990	-		IAI47_14425	0.47	-1.4
3,046,014	+		IAI47_14425	0.49	+2.6
3,046,015	-		IAI47_14425	0.49	-2.0
3,046,043	+		IAI47_14425	0.50	-1.0
3,046,043	+		IAI47_14425	0.50	+1.5
3,046,043	+		IAI47_14425	0.50	+0.2
3,046,043	+		IAI47_14425	0.50	-1.7
3,046,043	+		IAI47_14425	0.50	+2.2
3,046,043	+		IAI47_14425	0.50	+0.7
3,046,044	-		IAI47_14425	0.50	-1.0
3,046,044	-		IAI47_14425	0.50	+2.6
3,046,044	-		IAI47_14425	0.50	-1.4
3,046,044	-		IAI47_14425	0.50	-0.0
3,046,044	-		IAI47_14425	0.50	+2.4
3,046,044	-		IAI47_14425	0.50	-0.5
3,046,044	-		IAI47_14425	0.50	-1.1
3,046,044	-		IAI47_14425	0.50	-0.5
3,046,068	+		IAI47_14425	0.52	+0.7
3,046,068	+		IAI47_14425	0.52	-1.6
3,046,068	+		IAI47_14425	0.52	-1.5
3,046,068	+		IAI47_14425	0.52	+4.1
3,046,068	+		IAI47_14425	0.52	-0.3
3,046,069	-		IAI47_14425	0.52	-0.0
3,046,069	-		IAI47_14425	0.52	-0.7
3,046,069	-		IAI47_14425	0.52	-0.3
3,046,077	+		IAI47_14425	0.52	+1.2
3,046,090	-		IAI47_14425	0.53	-1.0
3,046,127	-		IAI47_14425	0.55	+2.8
3,046,231	+		IAI47_14425	0.61	+2.2
3,046,231	+		IAI47_14425	0.61	+2.5
3,046,231	+		IAI47_14425	0.61	+2.1
3,046,231	+		IAI47_14425	0.61	-0.3
3,046,231	+		IAI47_14425	0.61	-1.4
3,046,231	+		IAI47_14425	0.61	-2.9
3,046,231	+		IAI47_14425	0.61	-0.7
3,046,232	-		IAI47_14425	0.61	+1.8
3,046,232	-		IAI47_14425	0.61	-1.6
3,046,232	-		IAI47_14425	0.61	-1.3
3,046,232	-		IAI47_14425	0.61	+1.5
3,046,232	-		IAI47_14425	0.61	+1.0
3,046,232	-		IAI47_14425	0.61	-2.8
3,046,252	-		IAI47_14425	0.62	+1.7
3,046,252	-		IAI47_14425	0.62	+2.3
3,046,263	-		IAI47_14425	0.63	-0.0
3,046,263	-		IAI47_14425	0.63	-0.0
3,046,263	-		IAI47_14425	0.63	-1.9
3,046,365	+		IAI47_14425	0.69	-1.9
3,046,413	+		IAI47_14425	0.71	-1.6
3,046,413	+		IAI47_14425	0.71	+0.6
3,046,413	+		IAI47_14425	0.71	-1.0
3,046,413	+		IAI47_14425	0.71	-2.5
3,046,413	+		IAI47_14425	0.71	+2.2
3,046,413	+		IAI47_14425	0.71	-2.0
3,046,436	-		IAI47_14425	0.73	+2.9
3,046,497	-		IAI47_14425	0.76	+1.1
3,046,542	+		IAI47_14425	0.79	-2.2
3,046,543	-		IAI47_14425	0.79	+1.9
3,046,543	-		IAI47_14425	0.79	-2.0
3,046,598	+		IAI47_14425	0.82	-0.7
3,046,721	+		IAI47_14425	0.89	+2.3
3,046,722	-		IAI47_14425	0.89	+0.7
3,046,731	+		IAI47_14425	0.89	+2.4
3,046,731	+		IAI47_14425	0.89	-0.5
3,046,732	-		IAI47_14425	0.89	+1.2
3,046,732	-		IAI47_14425	0.89	-1.3
3,046,732	-		IAI47_14425	0.89	+2.9
3,046,763	+				-1.0
3,046,763	+				+0.2
3,046,779	+				-1.5
3,046,780	-				+1.2
3,046,829	+				-1.6
3,046,830	-				+0.8
3,046,908	+				-1.5
3,046,908	+				+3.6
3,046,908	+				-0.7
3,046,909	-				-1.4
3,046,909	-				+1.3
3,046,909	-				-2.5
3,046,912	+				+0.1
3,046,912	+				+1.6
3,046,912	+				+1.3
3,046,913	-				-0.0
3,046,913	-				+0.5
3,046,933	+				-2.5
3,046,934	-				+1.6
3,046,934	-				+0.3
3,046,934	-				-1.9
3,046,938	+				-0.7
3,046,938	+				-0.1
3,046,939	-				-2.1
3,047,044	+				-1.9
3,047,045	-				+1.2
3,047,045	-				+2.4
3,047,093	-				-2.0
3,047,110	+				+1.6
3,047,111	-				-2.9
3,047,149	+				+2.2
3,047,149	+				-1.0
3,047,149	+				-1.5
3,047,150	-				+0.8
3,047,150	-				+2.8
3,047,150	-				-2.6
3,047,158	+				+2.1
3,047,159	-				-1.9
3,047,159	-				-2.2
3,047,165	+				+2.3
3,047,165	+				+0.6
3,047,166	-				-2.1
3,047,166	-				+3.6
3,047,215	+				-1.9
3,047,216	-				-1.0
3,047,236	+				-1.3
3,047,236	+				-0.1
3,047,236	+				-1.0
3,047,236	+				-0.7
3,047,236	+				-0.7
3,047,237	-				-1.4
3,047,237	-				+0.2
3,047,267	+				-1.8
3,047,267	+				+2.8
3,047,268	-				+1.4
3,047,268	-				-1.5
3,047,280	-				+0.5
3,047,283	+				-1.4
3,047,284	-				+2.5
3,047,284	-				-2.7
3,047,323	-				-2.2
3,047,338	+				-0.0
3,047,358	+				+2.6
3,047,415	+				-1.8
3,047,418	+				-1.8
3,047,419	-				-1.1
3,047,461	+				-0.6
3,047,462	-				+0.1
3,047,462	-				-1.9
3,047,462	-				-1.8
3,047,590	+				-0.0
3,047,591	-				-1.3
3,047,591	-				+1.5
3,047,591	-				+0.7
3,047,591	-				+1.9
3,047,591	-				-0.0
3,047,637	-				+0.7
3,047,637	-				+1.0
3,047,637	-				-1.7
3,047,637	-				-1.0
3,047,728	+		IAI47_14430	0.15	+0.7
3,047,728	+		IAI47_14430	0.15	-1.8
3,047,779	+		IAI47_14430	0.18	+1.7
3,047,794	+		IAI47_14430	0.19	-0.1
3,047,795	-		IAI47_14430	0.19	-2.5
3,047,852	+		IAI47_14430	0.22	+0.8
3,047,861	+		IAI47_14430	0.23	+0.5
3,047,862	-		IAI47_14430	0.23	+3.6
3,047,872	+		IAI47_14430	0.23	-2.3
3,047,873	-		IAI47_14430	0.23	+0.6
3,047,873	-		IAI47_14430	0.23	-0.7