Strain Fitness in Pantoea sp. MT58 around IAI47_13560

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,875,466	-				+1.3
2,875,466	-				-0.7
2,875,466	-				-1.9
2,875,489	+		IAI47_13555	0.10	-2.3
2,875,490	-		IAI47_13555	0.10	+0.3
2,875,490	-		IAI47_13555	0.10	+1.2
2,875,495	+		IAI47_13555	0.11	+0.6
2,875,495	+		IAI47_13555	0.11	+1.3
2,875,539	-		IAI47_13555	0.15	+0.3
2,875,539	-		IAI47_13555	0.15	+3.4
2,875,539	-		IAI47_13555	0.15	+2.2
2,875,539	-		IAI47_13555	0.15	-0.5
2,875,539	-		IAI47_13555	0.15	-2.3
2,875,625	-		IAI47_13555	0.23	+2.3
2,875,669	+		IAI47_13555	0.27	-2.0
2,875,669	+		IAI47_13555	0.27	-2.1
2,875,669	+		IAI47_13555	0.27	-0.5
2,875,669	+		IAI47_13555	0.27	+2.0
2,875,669	+		IAI47_13555	0.27	-0.7
2,875,669	+		IAI47_13555	0.27	-1.2
2,875,669	+		IAI47_13555	0.27	+1.4
2,875,669	+		IAI47_13555	0.27	-2.0
2,875,670	-		IAI47_13555	0.27	-0.3
2,875,670	-		IAI47_13555	0.27	-1.2
2,875,670	-		IAI47_13555	0.27	-0.3
2,875,670	-		IAI47_13555	0.27	+1.4
2,875,670	-		IAI47_13555	0.27	-1.6
2,875,670	-		IAI47_13555	0.27	+0.8
2,875,670	-		IAI47_13555	0.27	+0.3
2,875,670	-		IAI47_13555	0.27	-3.3
2,875,670	-		IAI47_13555	0.27	-2.6
2,875,670	-		IAI47_13555	0.27	-0.9
2,875,670	-		IAI47_13555	0.27	-0.8
2,875,670	-		IAI47_13555	0.27	-1.4
2,875,670	-		IAI47_13555	0.27	-2.4
2,875,739	+		IAI47_13555	0.34	+2.7
2,875,739	+		IAI47_13555	0.34	-0.5
2,875,740	-		IAI47_13555	0.34	-0.3
2,875,740	-		IAI47_13555	0.34	+3.4
2,875,740	-		IAI47_13555	0.34	-2.3
2,875,740	-		IAI47_13555	0.34	-0.3
2,875,758	-		IAI47_13555	0.36	-0.9
2,875,758	-		IAI47_13555	0.36	-0.7
2,875,758	-		IAI47_13555	0.36	-1.4
2,875,890	+		IAI47_13555	0.48	-1.5
2,875,890	+		IAI47_13555	0.48	-1.3
2,875,903	+		IAI47_13555	0.49	+0.9
2,875,904	-		IAI47_13555	0.49	+3.6
2,875,932	+		IAI47_13555	0.52	-1.2
2,875,932	+		IAI47_13555	0.52	-0.7
2,876,025	-		IAI47_13555	0.61	-2.4
2,876,140	+		IAI47_13555	0.72	-1.4
2,876,145	+		IAI47_13555	0.72	+0.8
2,876,145	+		IAI47_13555	0.72	+1.3
2,876,146	-		IAI47_13555	0.72	-1.3
2,876,146	-		IAI47_13555	0.72	+1.8
2,876,146	-		IAI47_13555	0.72	+0.7
2,876,146	-		IAI47_13555	0.72	-1.7
2,876,146	-		IAI47_13555	0.72	-0.4
2,876,169	+		IAI47_13555	0.74	-1.3
2,876,203	-		IAI47_13555	0.78	+1.5
2,876,269	+		IAI47_13555	0.84	-1.7
2,876,357	-				+2.3
2,876,357	-				+2.1
2,876,422	+				-1.4
2,876,422	+				-0.5
2,876,423	-				+2.3
2,876,423	-				-2.2
2,876,423	-				-2.3
2,876,428	+				-1.2
2,876,428	+				+1.9
2,876,428	+				-1.7
2,876,428	+				+1.6
2,876,435	+				-1.6
2,876,435	+				-0.2
2,876,435	+				+0.3
2,876,436	-				+3.2
2,876,436	-				-0.1
2,876,436	-				+0.3
2,876,436	-				+0.1
2,876,458	-				+1.4
2,876,515	-		IAI47_13560	0.11	+3.7
2,876,521	-		IAI47_13560	0.12	-1.8
2,876,563	+		IAI47_13560	0.18	-0.3
2,876,564	-		IAI47_13560	0.18	+0.3
2,876,564	-		IAI47_13560	0.18	-1.9
2,876,571	+		IAI47_13560	0.19	-0.1
2,876,572	-		IAI47_13560	0.19	-0.9
2,876,572	-		IAI47_13560	0.19	+2.0
2,876,610	+		IAI47_13560	0.25	+2.9
2,876,611	-		IAI47_13560	0.25	-2.4
2,876,611	-		IAI47_13560	0.25	+0.9
2,876,713	-		IAI47_13560	0.40	-0.1
2,876,713	-		IAI47_13560	0.40	+2.5
2,876,799	+		IAI47_13560	0.52	+1.3
2,876,925	+		IAI47_13560	0.70	-1.8
2,876,925	+		IAI47_13560	0.70	+0.2
2,876,926	-		IAI47_13560	0.70	+3.6
2,877,084	+				+0.4
2,877,084	+				-2.1
2,877,084	+				-1.4
2,877,090	+				+1.3
2,877,125	-				+1.0
2,877,125	-				+0.7
2,877,148	+				+1.8
2,877,148	+				-1.1
2,877,162	-				+3.4
2,877,187	+				-1.1
2,877,187	+				+4.2
2,877,188	-				-2.1
2,877,188	-				-1.8
2,877,193	+				-2.3
2,877,193	+				-1.1
2,877,193	+				-1.1
2,877,193	+				-2.4
2,877,194	-				+4.3
2,877,194	-				+2.3
2,877,204	-		IAI47_13565	0.10	-2.0
2,877,257	+		IAI47_13565	0.17	-1.8
2,877,257	+		IAI47_13565	0.17	-0.1
2,877,257	+		IAI47_13565	0.17	+1.4
2,877,258	-		IAI47_13565	0.17	-1.0
2,877,258	-		IAI47_13565	0.17	+1.3
2,877,258	-		IAI47_13565	0.17	+0.3
2,877,258	-		IAI47_13565	0.17	-2.1
2,877,258	-		IAI47_13565	0.17	+1.7
2,877,258	-		IAI47_13565	0.17	+1.5
2,877,323	-		IAI47_13565	0.25	+1.7
2,877,323	-		IAI47_13565	0.25	+1.1
2,877,323	-		IAI47_13565	0.25	-0.2
2,877,334	+		IAI47_13565	0.27	-2.4
2,877,334	+		IAI47_13565	0.27	+4.0
2,877,335	-		IAI47_13565	0.27	-1.2
2,877,380	+		IAI47_13565	0.33	-2.3
2,877,394	-		IAI47_13565	0.35	-1.1
2,877,448	+		IAI47_13565	0.42	-0.1
2,877,448	+		IAI47_13565	0.42	-1.2
2,877,448	+		IAI47_13565	0.42	+1.8
2,877,449	-		IAI47_13565	0.42	-0.9
2,877,449	-		IAI47_13565	0.42	-1.1
2,877,449	-		IAI47_13565	0.42	-2.8
2,877,545	+		IAI47_13565	0.54	+1.7
2,877,545	+		IAI47_13565	0.54	-0.1
2,877,545	+		IAI47_13565	0.54	+0.1
2,877,598	+		IAI47_13565	0.61	-1.1
2,877,598	+		IAI47_13565	0.61	+2.7
2,877,598	+		IAI47_13565	0.61	-1.6
2,877,665	+		IAI47_13565	0.70	+2.6
2,877,665	+		IAI47_13565	0.70	+1.3
2,877,665	+		IAI47_13565	0.70	-0.9
2,877,665	+		IAI47_13565	0.70	-0.7
2,877,666	-		IAI47_13565	0.70	-0.5
2,877,666	-		IAI47_13565	0.70	-2.5
2,877,666	-		IAI47_13565	0.70	-0.9
2,877,666	-		IAI47_13565	0.70	-1.6
2,877,760	+		IAI47_13565	0.82	-2.8
2,877,760	+		IAI47_13565	0.82	+0.4
2,877,761	-		IAI47_13565	0.82	+2.3
2,877,761	-		IAI47_13565	0.82	-1.6
2,877,761	-		IAI47_13565	0.82	-1.2
2,877,761	-		IAI47_13565	0.82	-0.7
2,877,774	-		IAI47_13565	0.84	-0.5
2,877,774	-		IAI47_13565	0.84	+1.1
2,877,816	-		IAI47_13565	0.89	+2.1
2,877,816	-		IAI47_13565	0.89	+2.3
2,877,816	-		IAI47_13565	0.89	+3.3
2,877,816	-		IAI47_13565	0.89	+0.3
2,877,886	+				-0.9
2,877,887	-				-0.7
2,877,887	-				-0.7
2,877,887	-				-2.7
2,877,915	+				-2.1
2,877,915	+				-2.9
2,877,915	+				-2.9
2,877,915	+				-1.3
2,877,915	+				-0.8
2,877,915	+				-0.1
2,877,916	-				+1.4
2,877,916	-				+0.5
2,877,916	-				-0.7
2,877,916	-				-1.2
2,877,916	-				-2.5
2,877,916	-				+0.8
2,877,932	-				-2.1
2,877,934	+				-0.1
2,877,934	+				-0.7
2,877,934	+				-1.3
2,877,934	+				-2.0
2,877,934	+				+0.5
2,877,934	+				-1.1
2,877,935	-				-0.1
2,877,935	-				-0.1
2,877,935	-				+1.5
2,877,935	-				+1.8
2,877,935	-				-0.9
2,877,936	+				+1.8
2,877,936	+				-1.1
2,877,937	-				-0.9
2,877,937	-				+2.3
2,877,937	-				+1.0
2,877,937	-				-3.7
2,877,937	-				-2.9
2,877,937	-				-3.1
2,877,961	-				-0.7
2,878,003	+				+1.6
2,878,003	+				-0.2
2,878,003	+				+3.0
2,878,003	+				-2.6
2,878,003	+				-3.0
2,878,003	+				+0.7
2,878,003	+				-1.8
2,878,004	-				+2.6
2,878,004	-				-0.5
2,878,004	-				-1.8
2,878,004	-				+0.5
2,878,006	+				-2.1
2,878,006	+				+0.3
2,878,121	+		IAI47_13570	0.49	-1.7
2,878,122	-		IAI47_13570	0.49	+2.0
2,878,122	-		IAI47_13570	0.49	+1.7
2,878,122	-		IAI47_13570	0.49	+1.9
2,878,128	+		IAI47_13570	0.53	+2.2