Strain Fitness in Pantoea sp. MT58 around IAI47_06360

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,292,886	+		IAI47_06355	0.65	-0.1
1,292,928	+		IAI47_06355	0.69	+5.4
1,292,928	+		IAI47_06355	0.69	+2.0
1,292,929	-		IAI47_06355	0.69	+5.9
1,292,935	+		IAI47_06355	0.70	-1.3
1,292,935	+		IAI47_06355	0.70	+3.7
1,292,935	+		IAI47_06355	0.70	-0.1
1,292,936	-		IAI47_06355	0.70	+1.7
1,292,946	+		IAI47_06355	0.71	+3.7
1,292,947	-		IAI47_06355	0.71	-1.4
1,292,960	+		IAI47_06355	0.73	+3.8
1,292,990	+		IAI47_06355	0.76	+6.1
1,293,034	-		IAI47_06355	0.81	+1.3
1,293,076	+		IAI47_06355	0.85	-0.7
1,293,076	+		IAI47_06355	0.85	-0.1
1,293,091	-		IAI47_06355	0.87	+4.2
1,293,105	+		IAI47_06355	0.89	-0.1
1,293,123	+				+4.7
1,293,129	+				+1.0
1,293,129	+				+0.7
1,293,129	+				-2.9
1,293,130	-				+1.1
1,293,130	-				-1.6
1,293,130	-				+1.4
1,293,130	-				-0.6
1,293,130	-				-1.3
1,293,144	+				-1.7
1,293,145	-				-0.9
1,293,147	+				-0.6
1,293,147	+				+1.3
1,293,148	-				-3.0
1,293,148	-				-1.8
1,293,148	-				+0.9
1,293,148	-				+1.1
1,293,148	-				-1.6
1,293,157	+				-2.2
1,293,157	+				+1.0
1,293,158	-				-2.2
1,293,208	+				+3.6
1,293,208	+				+0.3
1,293,209	-				-1.3
1,293,209	-				-0.5
1,293,209	-				-0.1
1,293,209	-				-1.4
1,293,209	-				-2.6
1,293,211	+				+0.9
1,293,211	+				-1.6
1,293,212	-				+0.7
1,293,212	-				+1.2
1,293,212	-				-1.4
1,293,212	-				-0.9
1,293,227	+				-1.2
1,293,227	+				+1.3
1,293,227	+				-2.8
1,293,227	+				-0.7
1,293,228	-				+1.3
1,293,228	-				-2.0
1,293,228	-				-0.5
1,293,228	-				+0.7
1,293,251	+				+2.6
1,293,262	+				-0.1
1,293,262	+				-1.1
1,293,262	+				+0.3
1,293,264	+				+0.2
1,293,264	+				-1.1
1,293,264	+				-0.7
1,293,264	+				-0.5
1,293,264	+				-0.1
1,293,265	-				-1.4
1,293,265	-				-2.1
1,293,265	-				-0.9
1,293,268	+				+1.6
1,293,268	+				-2.1
1,293,268	+				+0.5
1,293,268	+				-3.4
1,293,268	+				+1.5
1,293,268	+				-2.6
1,293,269	-				+0.7
1,293,269	-				-1.2
1,293,269	-				+0.3
1,293,269	-				-0.7
1,293,269	-				-1.6
1,293,269	-				-1.4
1,293,269	-				-0.6
1,293,269	-				-1.2
1,293,269	-				-0.1
1,293,306	+				-1.2
1,293,307	-				+0.9
1,293,307	-				-0.7
1,293,309	+				+3.6
1,293,310	-				-0.5
1,293,354	+				+3.0
1,293,354	+				-1.1
1,293,354	+				+3.0
1,293,355	-				+0.3
1,293,491	+				-1.7
1,293,492	-				-1.1
1,293,500	+				+0.1
1,293,523	+				+2.9
1,293,523	+				+1.3
1,293,523	+				-1.4
1,293,523	+				+2.3
1,293,524	-				-0.8
1,293,524	-				+0.7
1,293,524	-				-2.2
1,293,524	-				-1.5
1,293,524	-				-0.2
1,293,576	+				-1.6
1,293,582	-				+3.0
1,293,582	-				+0.7
1,293,582	-				+1.6
1,293,582	-				-1.5
1,293,582	-				+1.6
1,293,611	-				-0.9
1,293,640	-				-0.9
1,293,643	-				+1.5
1,293,661	-				+1.1
1,293,661	-				+2.7
1,293,699	+				+2.6
1,293,699	+				+1.9
1,293,699	+				-1.5
1,293,722	+				+2.6
1,293,734	+				+2.1
1,293,744	+				+4.1
1,293,744	+				+5.5
1,293,768	+				+2.6
1,293,843	+				-0.3
1,293,844	-				+1.7
1,293,854	+				+3.4
1,293,863	+				+4.1
1,293,863	+				+5.4
1,293,901	+		IAI47_06360	0.12	+1.5
1,293,901	+				+0.7
1,293,905	+		IAI47_06360	0.13	+3.0
1,293,906	-		IAI47_06360	0.13	+5.4
1,294,104	+		IAI47_06360	0.57	+5.4
1,294,194	+		IAI47_06360	0.78	+0.7
1,294,243	+		IAI47_06360	0.89	-2.2
1,294,243	+		IAI47_06360	0.89	+3.3
1,294,256	+				+3.6
1,294,259	+				+1.6
1,294,259	+				+3.3
1,294,259	+				+1.4
1,294,259	+				+0.1
1,294,259	+				+2.3
1,294,259	+				+3.4
1,294,283	+				+3.2
1,294,284	-				+0.3
1,294,290	+				+1.1
1,294,290	+				+4.4
1,294,304	+				+2.0
1,294,305	-				+3.3
1,294,314	+				+2.0
1,294,315	-				+3.9
1,294,316	+				+3.9
1,294,316	+				+4.9
1,294,422	+		IAI47_06365	0.17	+4.6
1,294,422	+		IAI47_06365	0.17	+4.8
1,294,422	+		IAI47_06365	0.17	+2.5
1,294,423	-		IAI47_06365	0.17	-0.0
1,294,423	-		IAI47_06365	0.17	+3.0
1,294,425	-		IAI47_06365	0.17	+3.1
1,294,516	-		IAI47_06365	0.31	+2.9
1,294,661	-		IAI47_06365	0.52	+5.1
1,294,662	+		IAI47_06365	0.52	+3.0
1,294,663	-		IAI47_06365	0.52	+2.9
1,294,663	-		IAI47_06365	0.52	+4.1
1,294,728	+		IAI47_06365	0.62	+0.3
1,294,728	+		IAI47_06365	0.62	-0.3
1,294,729	-		IAI47_06365	0.62	+3.9
1,294,729	-		IAI47_06365	0.62	+3.5
1,294,738	-		IAI47_06365	0.63	+4.3
1,294,774	+		IAI47_06365	0.69	+3.8
1,294,774	+		IAI47_06365	0.69	+4.3
1,294,774	+		IAI47_06365	0.69	+2.9
1,294,775	-		IAI47_06365	0.69	+3.6
1,294,782	+		IAI47_06365	0.70	+3.7
1,294,782	+		IAI47_06365	0.70	+3.4
1,294,782	+				+4.4
1,294,782	+		IAI47_06365	0.70	+3.1
1,294,782	+		IAI47_06365	0.70	+3.3
1,294,783	-		IAI47_06365	0.70	-0.0
1,294,816	-				+5.4
1,294,816	-				+4.6
1,295,031	+				-0.5
1,295,031	+				+3.9
1,295,031	+				+2.9
1,295,093	+				+0.5
1,295,093	+				+9.0
1,295,098	+				+0.7
1,295,099	-				+5.8
1,295,099	-				+6.4
1,295,099	-				+2.9
1,295,099	-				+4.7
1,295,291	-		IAI47_06370	0.11	+3.9