Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04545 and IAI47_04550 are separated by 303 nucleotides IAI47_04550 and IAI47_04555 are separated by 153 nucleotides IAI47_04555 and IAI47_04560 are separated by 134 nucleotides
IAI47_04545: IAI47_04545 - glutaredoxin-like protein NrdH, at 958,263 to 958,505
_04545
IAI47_04550: IAI47_04550 - DUF883 family protein, at 958,809 to 959,126
_04550
IAI47_04555: IAI47_04555 - YgaC family protein, at 959,280 to 959,615
_04555
IAI47_04560: IAI47_04560 - S-methylmethionine permease, at 959,750 to 961,159
_04560
Position (kb) 959
960 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 958.334 kb on + strand, within IAI47_04545 at 958.335 kb on - strand, within IAI47_04545 at 958.335 kb on - strand, within IAI47_04545 at 958.416 kb on + strand, within IAI47_04545 at 958.417 kb on - strand, within IAI47_04545 at 958.417 kb on - strand, within IAI47_04545 at 958.423 kb on + strand, within IAI47_04545 at 958.424 kb on - strand, within IAI47_04545 at 958.478 kb on + strand, within IAI47_04545 at 958.478 kb on + strand, within IAI47_04545 at 958.478 kb on + strand, within IAI47_04545 at 958.479 kb on - strand, within IAI47_04545 at 958.494 kb on - strand at 958.611 kb on - strand at 958.611 kb on - strand at 958.614 kb on + strand at 958.614 kb on + strand at 958.614 kb on + strand at 958.615 kb on - strand at 958.617 kb on + strand at 958.617 kb on + strand at 958.617 kb on + strand at 958.617 kb on + strand at 958.618 kb on - strand at 958.623 kb on + strand at 958.623 kb on + strand at 958.624 kb on - strand at 958.624 kb on - strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.650 kb on + strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.651 kb on - strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.652 kb on + strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.653 kb on - strand at 958.654 kb on + strand at 958.654 kb on + strand at 958.654 kb on + strand at 958.654 kb on + strand at 958.656 kb on + strand at 958.662 kb on + strand at 958.671 kb on + strand at 958.671 kb on + strand at 958.671 kb on + strand at 958.672 kb on - strand at 958.672 kb on - strand at 958.732 kb on + strand at 958.733 kb on - strand at 958.733 kb on - strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.805 kb on + strand at 958.806 kb on - strand at 958.830 kb on + strand at 958.863 kb on - strand, within IAI47_04550 at 958.863 kb on - strand, within IAI47_04550 at 958.863 kb on - strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.866 kb on + strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.867 kb on - strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.894 kb on + strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.895 kb on - strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.898 kb on + strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.899 kb on - strand, within IAI47_04550 at 958.961 kb on + strand, within IAI47_04550 at 959.090 kb on + strand, within IAI47_04550 at 959.090 kb on + strand, within IAI47_04550 at 959.091 kb on - strand, within IAI47_04550 at 959.091 kb on - strand, within IAI47_04550 at 959.121 kb on - strand at 959.154 kb on + strand at 959.154 kb on + strand at 959.154 kb on + strand at 959.154 kb on + strand at 959.154 kb on + strand at 959.155 kb on - strand at 959.155 kb on - strand at 959.157 kb on + strand at 959.157 kb on + strand at 959.157 kb on + strand at 959.157 kb on + strand at 959.157 kb on + strand at 959.157 kb on + strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.158 kb on - strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.160 kb on + strand at 959.161 kb on - strand at 959.161 kb on - strand at 959.161 kb on - strand at 959.161 kb on - strand at 959.161 kb on - strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.166 kb on - strand at 959.166 kb on - strand at 959.166 kb on - strand at 959.166 kb on - strand at 959.181 kb on + strand at 959.181 kb on + strand at 959.182 kb on - strand at 959.242 kb on + strand at 959.242 kb on + strand at 959.242 kb on + strand at 959.242 kb on + strand at 959.242 kb on + strand at 959.242 kb on + strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.243 kb on - strand at 959.283 kb on + strand at 959.283 kb on + strand at 959.283 kb on + strand at 959.283 kb on + strand at 959.283 kb on + strand at 959.283 kb on + strand at 959.284 kb on - strand at 959.284 kb on - strand at 959.284 kb on - strand at 959.284 kb on - strand at 959.287 kb on + strand at 959.287 kb on + strand at 959.287 kb on + strand at 959.288 kb on - strand at 959.302 kb on + strand at 959.311 kb on + strand at 959.312 kb on - strand at 959.345 kb on + strand, within IAI47_04555 at 959.346 kb on - strand, within IAI47_04555 at 959.358 kb on + strand, within IAI47_04555 at 959.358 kb on + strand, within IAI47_04555 at 959.358 kb on + strand, within IAI47_04555 at 959.359 kb on - strand, within IAI47_04555 at 959.359 kb on - strand, within IAI47_04555 at 959.359 kb on - strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.382 kb on + strand, within IAI47_04555 at 959.383 kb on - strand, within IAI47_04555 at 959.383 kb on - strand, within IAI47_04555 at 959.383 kb on - strand, within IAI47_04555 at 959.388 kb on + strand, within IAI47_04555 at 959.388 kb on + strand, within IAI47_04555 at 959.388 kb on + strand, within IAI47_04555 at 959.389 kb on - strand, within IAI47_04555 at 959.425 kb on + strand, within IAI47_04555 at 959.502 kb on + strand, within IAI47_04555 at 959.502 kb on + strand, within IAI47_04555 at 959.502 kb on + strand, within IAI47_04555 at 959.502 kb on + strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.503 kb on - strand, within IAI47_04555 at 959.521 kb on - strand, within IAI47_04555 at 959.521 kb on - strand, within IAI47_04555 at 959.521 kb on - strand, within IAI47_04555 at 959.547 kb on + strand, within IAI47_04555 at 959.548 kb on - strand, within IAI47_04555 at 959.548 kb on - strand, within IAI47_04555 at 959.548 kb on - strand, within IAI47_04555 at 959.592 kb on + strand at 959.592 kb on + strand at 959.592 kb on + strand at 959.592 kb on + strand at 959.592 kb on + strand at 959.593 kb on - strand at 959.593 kb on - strand at 959.594 kb on + strand at 959.594 kb on + strand at 959.594 kb on + strand at 959.594 kb on + strand at 959.595 kb on - strand at 959.595 kb on - strand at 959.701 kb on + strand at 959.717 kb on - strand at 959.718 kb on + strand at 959.718 kb on + strand at 959.718 kb on + strand at 959.718 kb on + strand at 959.718 kb on + strand at 959.719 kb on - strand at 959.719 kb on - strand at 959.719 kb on - strand at 959.719 kb on - strand at 959.726 kb on + strand at 959.727 kb on - strand at 959.727 kb on - strand at 959.737 kb on - strand at 959.820 kb on + strand at 959.836 kb on - strand at 959.868 kb on - strand at 959.869 kb on + strand at 959.869 kb on + strand at 959.869 kb on + strand at 959.870 kb on - strand at 959.870 kb on - strand at 959.870 kb on - strand at 959.878 kb on + strand at 959.878 kb on + strand at 959.878 kb on + strand at 959.879 kb on - strand at 959.879 kb on - strand at 959.879 kb on - strand at 959.882 kb on - strand at 959.909 kb on + strand, within IAI47_04560 at 959.909 kb on + strand, within IAI47_04560 at 959.910 kb on - strand, within IAI47_04560 at 959.910 kb on - strand, within IAI47_04560 at 959.910 kb on - strand, within IAI47_04560 at 959.910 kb on - strand, within IAI47_04560 at 960.011 kb on + strand, within IAI47_04560 at 960.011 kb on + strand, within IAI47_04560 at 960.012 kb on - strand, within IAI47_04560 at 960.032 kb on + strand, within IAI47_04560 at 960.032 kb on + strand, within IAI47_04560 at 960.034 kb on + strand, within IAI47_04560 at 960.034 kb on + strand, within IAI47_04560 at 960.034 kb on + strand, within IAI47_04560 at 960.034 kb on + strand, within IAI47_04560 at 960.035 kb on - strand, within IAI47_04560 at 960.051 kb on - strand, within IAI47_04560 at 960.051 kb on - strand, within IAI47_04560 at 960.051 kb on - strand, within IAI47_04560 at 960.106 kb on + strand, within IAI47_04560 at 960.106 kb on + strand, within IAI47_04560 at 960.106 kb on + strand, within IAI47_04560 at 960.107 kb on - strand, within IAI47_04560 at 960.107 kb on - strand, within IAI47_04560 at 960.113 kb on + strand, within IAI47_04560 at 960.114 kb on - strand, within IAI47_04560 at 960.114 kb on - strand, within IAI47_04560 at 960.141 kb on + strand, within IAI47_04560 at 960.141 kb on + strand, within IAI47_04560 at 960.142 kb on - strand, within IAI47_04560 at 960.142 kb on - strand, within IAI47_04560 at 960.142 kb on - strand, within IAI47_04560 at 960.170 kb on + strand, within IAI47_04560 at 960.170 kb on + strand, within IAI47_04560 at 960.170 kb on + strand, within IAI47_04560 at 960.170 kb on + strand, within IAI47_04560 at 960.170 kb on + strand, within IAI47_04560 at 960.171 kb on - strand, within IAI47_04560 at 960.171 kb on - strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.232 kb on + strand, within IAI47_04560 at 960.233 kb on - strand, within IAI47_04560 at 960.233 kb on - strand, within IAI47_04560 at 960.233 kb on - strand, within IAI47_04560 at 960.233 kb on - strand, within IAI47_04560 at 960.256 kb on + strand, within IAI47_04560 at 960.256 kb on + strand, within IAI47_04560 at 960.363 kb on + strand, within IAI47_04560 at 960.364 kb on - strand, within IAI47_04560 at 960.364 kb on - strand, within IAI47_04560 at 960.568 kb on - strand, within IAI47_04560
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 958,334 + IAI47_04545 0.29 +0.9 958,335 - IAI47_04545 0.30 -1.8 958,335 - IAI47_04545 0.30 -1.8 958,416 + IAI47_04545 0.63 +2.7 958,417 - IAI47_04545 0.63 -0.2 958,417 - IAI47_04545 0.63 +2.2 958,423 + IAI47_04545 0.66 +1.4 958,424 - IAI47_04545 0.66 +0.9 958,478 + IAI47_04545 0.88 +1.7 958,478 + IAI47_04545 0.88 -1.8 958,478 + IAI47_04545 0.88 +0.1 958,479 - IAI47_04545 0.89 -0.8 958,494 - +2.5 958,611 - +0.0 958,611 - -0.1 958,614 + +2.1 958,614 + -2.6 958,614 + -0.8 958,615 - -1.9 958,617 + -0.9 958,617 + +0.8 958,617 + +0.8 958,617 + -2.6 958,618 - -1.9 958,623 + -0.9 958,623 + -0.9 958,624 - +1.3 958,624 - +3.0 958,650 + +1.8 958,650 + +2.7 958,650 + +1.5 958,650 + +4.3 958,650 + -0.1 958,650 + +1.4 958,650 + -2.5 958,650 + +0.3 958,650 + -1.1 958,650 + +0.2 958,650 + +3.0 958,650 + +2.1 958,650 + +0.1 958,651 - -0.2 958,651 - -2.6 958,651 - +2.8 958,651 - +0.8 958,651 - +0.4 958,651 - -1.3 958,651 - -2.4 958,651 - -1.7 958,651 - +2.5 958,651 - -1.6 958,651 - +1.4 958,651 - -0.8 958,652 + -0.7 958,652 + -1.2 958,652 + -0.8 958,652 + +1.9 958,652 + +2.4 958,652 + +0.5 958,652 + +2.4 958,652 + +2.1 958,652 + -1.8 958,653 - -1.9 958,653 - +0.2 958,653 - -0.3 958,653 - -0.9 958,653 - +1.4 958,653 - +2.2 958,653 - -2.5 958,653 - +1.8 958,653 - -0.2 958,654 + -0.5 958,654 + -1.1 958,654 + +1.2 958,654 + -1.6 958,656 + -1.2 958,662 + -1.1 958,671 + -1.5 958,671 + +2.2 958,671 + -2.2 958,672 - -2.0 958,672 - -1.1 958,732 + -2.7 958,733 - -1.3 958,733 - -0.2 958,805 + -0.9 958,805 + -0.4 958,805 + -0.8 958,805 + +1.0 958,805 + +2.4 958,805 + +0.7 958,805 + +1.6 958,805 + -0.4 958,805 + +0.2 958,806 - -0.4 958,830 + -1.1 958,863 - IAI47_04550 0.17 +0.3 958,863 - IAI47_04550 0.17 -2.5 958,863 - IAI47_04550 0.17 +2.9 958,866 + IAI47_04550 0.18 +1.2 958,866 + IAI47_04550 0.18 -0.8 958,866 + IAI47_04550 0.18 -2.5 958,866 + IAI47_04550 0.18 +1.1 958,866 + IAI47_04550 0.18 +0.2 958,866 + IAI47_04550 0.18 -2.1 958,866 + IAI47_04550 0.18 +1.1 958,867 - IAI47_04550 0.18 +3.1 958,867 - IAI47_04550 0.18 +2.4 958,867 - IAI47_04550 0.18 +0.5 958,867 - IAI47_04550 0.18 -1.9 958,867 - IAI47_04550 0.18 +1.1 958,867 - IAI47_04550 0.18 -1.3 958,894 + IAI47_04550 0.27 -0.2 958,894 + IAI47_04550 0.27 +2.2 958,894 + IAI47_04550 0.27 +3.7 958,894 + IAI47_04550 0.27 -0.0 958,894 + IAI47_04550 0.27 -0.8 958,894 + IAI47_04550 0.27 +3.6 958,894 + IAI47_04550 0.27 -0.3 958,894 + IAI47_04550 0.27 +3.3 958,894 + IAI47_04550 0.27 +2.7 958,894 + IAI47_04550 0.27 +0.3 958,894 + IAI47_04550 0.27 +1.3 958,894 + IAI47_04550 0.27 -1.1 958,894 + IAI47_04550 0.27 -1.6 958,894 + IAI47_04550 0.27 +2.5 958,894 + IAI47_04550 0.27 -2.2 958,894 + IAI47_04550 0.27 -2.5 958,894 + IAI47_04550 0.27 -3.9 958,894 + IAI47_04550 0.27 -1.6 958,894 + IAI47_04550 0.27 +3.4 958,894 + IAI47_04550 0.27 +1.4 958,894 + IAI47_04550 0.27 +2.1 958,894 + IAI47_04550 0.27 +0.1 958,894 + IAI47_04550 0.27 -1.7 958,894 + IAI47_04550 0.27 +0.2 958,895 - IAI47_04550 0.27 +1.8 958,895 - IAI47_04550 0.27 -2.6 958,895 - IAI47_04550 0.27 -1.7 958,895 - IAI47_04550 0.27 +2.1 958,895 - IAI47_04550 0.27 -2.6 958,895 - IAI47_04550 0.27 -2.8 958,895 - IAI47_04550 0.27 +1.5 958,895 - IAI47_04550 0.27 +0.8 958,895 - IAI47_04550 0.27 -1.4 958,895 - IAI47_04550 0.27 +2.0 958,895 - IAI47_04550 0.27 -2.5 958,895 - IAI47_04550 0.27 -0.6 958,895 - IAI47_04550 0.27 +0.6 958,895 - IAI47_04550 0.27 +1.5 958,895 - IAI47_04550 0.27 +1.1 958,895 - IAI47_04550 0.27 -0.4 958,895 - IAI47_04550 0.27 -0.9 958,895 - IAI47_04550 0.27 -0.1 958,895 - IAI47_04550 0.27 -2.7 958,895 - IAI47_04550 0.27 +2.4 958,898 + IAI47_04550 0.28 -2.2 958,898 + IAI47_04550 0.28 +0.2 958,898 + IAI47_04550 0.28 +3.0 958,898 + IAI47_04550 0.28 -0.1 958,898 + IAI47_04550 0.28 +2.2 958,898 + IAI47_04550 0.28 -0.8 958,899 - IAI47_04550 0.28 -1.5 958,899 - IAI47_04550 0.28 -2.5 958,899 - IAI47_04550 0.28 -0.2 958,899 - IAI47_04550 0.28 +3.0 958,899 - IAI47_04550 0.28 -2.5 958,899 - IAI47_04550 0.28 +0.3 958,899 - IAI47_04550 0.28 +2.1 958,899 - IAI47_04550 0.28 +2.2 958,961 + IAI47_04550 0.48 -2.6 959,090 + IAI47_04550 0.88 +3.2 959,090 + IAI47_04550 0.88 +3.0 959,091 - 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Or see this region's nucleotide sequence