Strain Fitness in Pantoea sp. MT58 around IAI47_00525

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
118,388	-				+0.8
118,388	-				-1.1
118,388	-				-1.1
118,388	-				-1.4
118,388	-				-0.9
118,388	-				+1.4
118,388	-				-1.8
118,388	-				+0.4
118,397	-				-1.1
118,397	-				+0.2
118,397	-				-2.1
118,429	-				+1.6
118,429	-				-1.1
118,429	-				+1.6
118,429	-				+1.3
118,440	-				-1.2
118,440	-				+2.7
119,111	-				+1.3
119,111	-				+2.5
119,111	-				-1.6
119,113	-				-1.8
119,113	-				-0.2
119,113	-				-2.0
119,113	-				+0.5
119,113	-				-1.8
119,113	-				-1.0
119,113	-				+2.4
119,201	+				-0.0
119,201	+				-0.0
119,201	+				+2.3
119,201	+				+1.6
119,202	-				+0.9
119,202	-				-0.1
119,217	-				+2.6
119,262	+				-1.2
119,262	+				+3.1
119,262	+				-0.6
119,263	-				+1.1
119,263	-				-1.2
119,305	+				+3.1
119,305	+				+1.1
119,305	+				+3.0
119,305	+				+0.9
119,306	-				+1.5
119,306	-				-1.2
119,306	-				-0.4
119,306	-				-1.5
119,456	+				+2.3
119,456	+				+0.1
119,456	+				-2.2
119,456	+				-1.1
119,456	+				-2.9
119,456	+				-0.1
119,456	+				+0.4
119,457	-				-1.2
119,457	-				-2.3
119,457	-				-1.4
119,459	+				-0.6
119,459	+				-2.9
119,459	+				+2.0
119,459	+				+1.1
119,460	-				-1.6
119,460	-				+1.4
119,495	+		IAI47_00525	0.11	+0.6
119,495	+		IAI47_00525	0.11	+1.5
119,496	-		IAI47_00525	0.11	+2.7
119,496	-		IAI47_00525	0.11	+0.4
119,521	+		IAI47_00525	0.12	+0.5
119,521	+		IAI47_00525	0.12	-2.1
119,521	+		IAI47_00525	0.12	-0.9
119,522	-		IAI47_00525	0.12	-1.1
119,522	-		IAI47_00525	0.12	-1.7
119,522	-		IAI47_00525	0.12	-0.0
119,540	-		IAI47_00525	0.13	-1.8
119,558	+		IAI47_00525	0.14	-3.0
119,558	+		IAI47_00525	0.14	+1.8
119,558	+		IAI47_00525	0.14	+2.2
119,558	+		IAI47_00525	0.14	+0.9
119,559	-		IAI47_00525	0.14	-2.4
119,559	-		IAI47_00525	0.14	+1.7
119,559	-		IAI47_00525	0.14	+0.0
119,559	-		IAI47_00525	0.14	-2.2
119,559	-		IAI47_00525	0.14	-1.3
119,559	-		IAI47_00525	0.14	+1.1
119,608	+		IAI47_00525	0.17	-1.9
119,609	-		IAI47_00525	0.17	-1.3
119,648	+		IAI47_00525	0.20	-0.6
119,649	-		IAI47_00525	0.20	+2.3
119,649	-		IAI47_00525	0.20	-2.4
119,649	-		IAI47_00525	0.20	+2.0
119,717	+		IAI47_00525	0.23	+0.2
119,717	+		IAI47_00525	0.23	-0.7
119,717	+		IAI47_00525	0.23	-1.8
119,745	+		IAI47_00525	0.25	-1.4
119,745	+		IAI47_00525	0.25	-2.5
119,746	-		IAI47_00525	0.25	+1.3
119,746	-		IAI47_00525	0.25	-0.0
119,746	-		IAI47_00525	0.25	-2.7
119,818	+		IAI47_00525	0.29	-3.6
119,819	-		IAI47_00525	0.29	+0.1
119,844	+		IAI47_00525	0.31	+1.0
119,845	-		IAI47_00525	0.31	+1.5
119,845	-		IAI47_00525	0.31	-0.1
120,080	-		IAI47_00525	0.44	+0.8
120,096	+		IAI47_00525	0.45	-1.8
120,096	+		IAI47_00525	0.45	-1.7
120,096	+		IAI47_00525	0.45	+1.0
120,096	+		IAI47_00525	0.45	-1.1
120,096	+		IAI47_00525	0.45	+0.7
120,097	-		IAI47_00525	0.45	+1.1
120,097	-		IAI47_00525	0.45	+0.4
120,097	-		IAI47_00525	0.45	+2.0
120,097	-		IAI47_00525	0.45	-0.9
120,097	-		IAI47_00525	0.45	-2.8
120,097	-		IAI47_00525	0.45	-2.1
120,097	-		IAI47_00525	0.45	+2.1
120,208	+		IAI47_00525	0.51	-1.0
120,208	+		IAI47_00525	0.51	-0.3
120,208	+		IAI47_00525	0.51	-0.4
120,208	+		IAI47_00525	0.51	-1.9
120,208	+		IAI47_00525	0.51	-0.8
120,208	+		IAI47_00525	0.51	+1.4
120,208	+		IAI47_00525	0.51	+1.0
120,208	+		IAI47_00525	0.51	-0.2
120,208	+		IAI47_00525	0.51	+1.9
120,208	+		IAI47_00525	0.51	-2.0
120,208	+		IAI47_00525	0.51	-2.1
120,208	+		IAI47_00525	0.51	+2.5
120,208	+		IAI47_00525	0.51	-1.2
120,208	+		IAI47_00525	0.51	+1.7
120,209	-		IAI47_00525	0.52	-3.0
120,209	-		IAI47_00525	0.52	+2.4
120,209	-		IAI47_00525	0.52	-0.8
120,209	-		IAI47_00525	0.52	+0.3
120,209	-		IAI47_00525	0.52	-1.2
120,209	-		IAI47_00525	0.52	+2.8
120,209	-		IAI47_00525	0.52	+1.0
120,209	-		IAI47_00525	0.52	+0.8
120,210	+		IAI47_00525	0.52	-1.5
120,210	+		IAI47_00525	0.52	+2.7
120,210	+		IAI47_00525	0.52	+1.8
120,210	+		IAI47_00525	0.52	-1.3
120,210	+		IAI47_00525	0.52	-0.6
120,210	+		IAI47_00525	0.52	+2.1
120,210	+		IAI47_00525	0.52	+0.6
120,211	-		IAI47_00525	0.52	+1.2
120,211	-		IAI47_00525	0.52	+3.0
120,211	-		IAI47_00525	0.52	+2.1
120,211	-		IAI47_00525	0.52	+1.3
120,211	-		IAI47_00525	0.52	+1.8
120,211	-		IAI47_00525	0.52	+0.5
120,230	+		IAI47_00525	0.53	-0.4
120,230	+		IAI47_00525	0.53	-0.0
120,230	+		IAI47_00525	0.53	-2.0
120,230	+		IAI47_00525	0.53	-0.1
120,231	-		IAI47_00525	0.53	-0.8
120,306	+		IAI47_00525	0.57	-0.2
120,307	-		IAI47_00525	0.57	+1.4
120,310	+		IAI47_00525	0.57	+2.3
120,310	+		IAI47_00525	0.57	-3.0
120,310	+		IAI47_00525	0.57	-2.3
120,311	-		IAI47_00525	0.57	+0.1
120,311	-		IAI47_00525	0.57	-1.4
120,311	-		IAI47_00525	0.57	+0.4
120,311	-		IAI47_00525	0.57	+0.7
120,311	-		IAI47_00525	0.57	-0.2
120,311	-		IAI47_00525	0.57	-1.5
120,337	+		IAI47_00525	0.59	-0.6
120,337	+		IAI47_00525	0.59	+0.3
120,338	-		IAI47_00525	0.59	-1.0
120,338	-		IAI47_00525	0.59	-2.4
120,338	-		IAI47_00525	0.59	+2.3
120,355	+		IAI47_00525	0.60	+1.0
120,356	-		IAI47_00525	0.60	+2.8
120,482	+		IAI47_00525	0.67	-0.7
120,482	+		IAI47_00525	0.67	-2.0
120,483	-		IAI47_00525	0.67	+0.6
120,510	-		IAI47_00525	0.69	+2.3
120,511	+		IAI47_00525	0.69	+0.9
120,511	+		IAI47_00525	0.69	+1.5
120,511	+		IAI47_00525	0.69	-1.1
120,512	-		IAI47_00525	0.69	-2.3
120,526	+		IAI47_00525	0.70	-1.0
120,527	+		IAI47_00525	0.70	-0.8
120,527	+		IAI47_00525	0.70	+1.8
120,527	+		IAI47_00525	0.70	-0.4
120,528	-		IAI47_00525	0.70	-1.0
120,528	-		IAI47_00525	0.70	-1.8
120,528	-		IAI47_00525	0.70	+2.6
120,528	-		IAI47_00525	0.70	-0.9
120,529	+		IAI47_00525	0.70	-1.8
120,529	+		IAI47_00525	0.70	-1.9
120,529	+		IAI47_00525	0.70	-0.8
120,529	+		IAI47_00525	0.70	+0.9
120,530	-		IAI47_00525	0.70	-1.8
120,530	-		IAI47_00525	0.70	+0.5
120,530	-		IAI47_00525	0.70	-2.1
120,530	-		IAI47_00525	0.70	-1.1
120,530	-		IAI47_00525	0.70	+0.7
120,530	-		IAI47_00525	0.70	-0.9
120,530	-		IAI47_00525	0.70	+2.2
120,530	-		IAI47_00525	0.70	-2.1
120,530	-		IAI47_00525	0.70	-1.1
120,558	+		IAI47_00525	0.71	-1.2
120,559	-		IAI47_00525	0.72	-2.0
120,559	-		IAI47_00525	0.72	+2.6
120,570	+		IAI47_00525	0.72	-1.5
120,601	+		IAI47_00525	0.74	+1.4
120,601	+		IAI47_00525	0.74	-0.5
120,636	+		IAI47_00525	0.76	+0.6
120,637	-		IAI47_00525	0.76	+0.5
120,652	+		IAI47_00525	0.77	-0.6
120,653	-		IAI47_00525	0.77	-2.9
120,653	-		IAI47_00525	0.77	+3.3
120,653	-		IAI47_00525	0.77	-1.0
120,653	-		IAI47_00525	0.77	-3.0
120,653	-		IAI47_00525	0.77	+1.0
120,653	-		IAI47_00525	0.77	-2.4
120,682	-		IAI47_00525	0.79	-1.9
120,751	+		IAI47_00525	0.82	-1.7
120,752	-		IAI47_00525	0.83	+3.0
120,855	+		IAI47_00525	0.88	-3.8
120,855	+		IAI47_00525	0.88	+2.4
120,855	+		IAI47_00525	0.88	-2.6
120,855	+		IAI47_00525	0.88	+1.7
120,856	-		IAI47_00525	0.88	+2.8
120,856	-		IAI47_00525	0.88	+0.1
120,856	-		IAI47_00525	0.88	-1.3
120,856	-		IAI47_00525	0.88	+1.0
120,856	-		IAI47_00525	0.88	+2.0
120,871	+		IAI47_00525	0.89	+0.4
120,871	+		IAI47_00525	0.89	-2.3
120,871	+		IAI47_00525	0.89	+1.4
120,872	-		IAI47_00525	0.89	+2.2
120,872	-		IAI47_00525	0.89	-0.0
120,872	-		IAI47_00525	0.89	-3.0
120,982	+				+1.4
120,983	-				+3.7
120,983	-				-1.1
120,983	-				-1.7
120,983	-				-2.4
121,014	+				+2.4
121,014	+				+0.8
121,015	-				+2.0
121,084	+		IAI47_00530	0.14	+2.1
121,084	+		IAI47_00530	0.14	-2.6
121,085	-		IAI47_00530	0.15	-2.1
121,090	+		IAI47_00530	0.15	-2.9
121,090	+		IAI47_00530	0.15	-0.6
121,090	+		IAI47_00530	0.15	+3.6
121,090	+		IAI47_00530	0.15	-1.2
121,090	+		IAI47_00530	0.15	-0.4
121,090	+		IAI47_00530	0.15	-0.2
121,091	-		IAI47_00530	0.16	-2.2
121,091	-		IAI47_00530	0.16	+1.7
121,091	-		IAI47_00530	0.16	-2.7
121,132	+		IAI47_00530	0.22	+1.0
121,132	+		IAI47_00530	0.22	-1.8
121,133	-		IAI47_00530	0.22	-0.4
121,133	-		IAI47_00530	0.22	-0.0
121,133	-		IAI47_00530	0.22	+0.4
121,134	+		IAI47_00530	0.22	+2.6
121,134	+		IAI47_00530	0.22	-3.5
121,134	+		IAI47_00530	0.22	-2.2
121,134	+		IAI47_00530	0.22	-0.4
121,134	+		IAI47_00530	0.22	+0.7
121,134	+		IAI47_00530	0.22	-2.3
121,134	+		IAI47_00530	0.22	+2.8
121,134	+		IAI47_00530	0.22	+1.6
121,134	+		IAI47_00530	0.22	+2.2
121,134	+		IAI47_00530	0.22	-2.2
121,134	+		IAI47_00530	0.22	-2.8
121,134	+		IAI47_00530	0.22	-2.8
121,134	+		IAI47_00530	0.22	-0.2
121,134	+		IAI47_00530	0.22	-1.9
121,135	-		IAI47_00530	0.23	-2.4
121,135	-		IAI47_00530	0.23	+2.5
121,135	-		IAI47_00530	0.23	+2.2
121,135	-		IAI47_00530	0.23	+1.7
121,135	-		IAI47_00530	0.23	+1.2
121,135	-		IAI47_00530	0.23	+0.1
121,135	-		IAI47_00530	0.23	-1.1
121,135	-		IAI47_00530	0.23	-1.2
121,135	-		IAI47_00530	0.23	-1.0
121,135	-		IAI47_00530	0.23	-1.3
121,135	-		IAI47_00530	0.23	+2.2
121,135	-		IAI47_00530	0.23	+1.8
121,135	-		IAI47_00530	0.23	+2.6
121,135	-		IAI47_00530	0.23	+1.7
121,167	+		IAI47_00530	0.28	+0.9
121,168	-		IAI47_00530	0.28	+1.0
121,201	+		IAI47_00530	0.33	+0.6
121,202	-		IAI47_00530	0.33	+1.8
121,220	+		IAI47_00530	0.36	-3.2
121,221	-		IAI47_00530	0.37	-1.9
121,221	-		IAI47_00530	0.37	+0.9
121,221	-		IAI47_00530	0.37	-1.5
121,221	-		IAI47_00530	0.37	-1.7
121,240	+		IAI47_00530	0.40	-0.4
121,240	+		IAI47_00530	0.40	-0.0
121,241	-		IAI47_00530	0.40	+0.3
121,241	-		IAI47_00530	0.40	-0.7
121,253	+		IAI47_00530	0.42	-0.7
121,264	+		IAI47_00530	0.44	+1.3
121,264	+		IAI47_00530	0.44	+2.0
121,264	+		IAI47_00530	0.44	+0.3
121,265	-		IAI47_00530	0.44	-0.2
121,306	+		IAI47_00530	0.50	+2.7
121,422	+		IAI47_00530	0.69	+2.6
121,422	+		IAI47_00530	0.69	-0.6
121,422	+		IAI47_00530	0.69	+2.8
121,422	+		IAI47_00530	0.69	-0.8
121,422	+		IAI47_00530	0.69	+2.8
121,423	-		IAI47_00530	0.69	+2.8
121,423	-		IAI47_00530	0.69	+1.6
121,423	-		IAI47_00530	0.69	+0.1
121,423	-		IAI47_00530	0.69	+0.8
121,423	-		IAI47_00530	0.69	-0.6
121,423	-		IAI47_00530	0.69	-0.6
121,423	-		IAI47_00530	0.69	+0.7
121,423	-		IAI47_00530	0.69	+0.8
121,423	-		IAI47_00530	0.69	+2.2
121,423	-		IAI47_00530	0.69	+0.9
121,510	+		IAI47_00530	0.83	-0.6
121,510	+		IAI47_00530	0.83	+1.9
121,510	+		IAI47_00530	0.83	+2.3
121,510	+		IAI47_00530	0.83	+0.2
121,510	+		IAI47_00530	0.83	+2.2
121,510	+		IAI47_00530	0.83	-1.7
121,511	-		IAI47_00530	0.83	-2.5
121,511	-		IAI47_00530	0.83	+1.1
121,511	-		IAI47_00530	0.83	+0.7
121,511	-		IAI47_00530	0.83	-1.2
121,513	+		IAI47_00530	0.84	+0.8
121,513	+		IAI47_00530	0.84	-1.0
121,513	+		IAI47_00530	0.84	+1.1
121,513	+		IAI47_00530	0.84	-2.9
121,513	+		IAI47_00530	0.84	+3.0
121,513	+		IAI47_00530	0.84	-2.2
121,514	-		IAI47_00530	0.84	+2.5
121,514	-		IAI47_00530	0.84	+1.7
121,579	+				-2.4
121,580	-				-0.6
121,580	-				-1.3
121,583	-				-3.1
121,588	+				-2.0
121,588	+				+0.2
121,589	-				-2.3
121,593	+				+1.8
121,593	+				-0.8
121,593	+				-3.1
121,594	-				+2.9
121,594	-				+2.6
121,608	-				-3.4
121,608	-				-2.3
121,608	-				-2.9
121,608	-				-2.2
121,608	-				+1.8
121,612	+				-1.7
121,613	-				-0.4
121,613	-				-2.2
121,613	-				+2.7
121,613	-				-2.1
121,626	-				-0.4
121,626	-				-2.9
121,642	+				-0.2
121,642	+				-3.4
121,642	+				-1.8
121,642	+				-2.0
121,643	-				-2.7
121,643	-				-2.1
121,643	-				-1.6
121,643	-				+1.1
121,654	+				-0.0
121,655	-				+2.0
121,655	-				-2.1
121,707	+				-0.9
121,707	+				+2.2
121,707	+				-0.5
121,707	+				+1.8
121,707	+				-1.8
121,707	+				+2.1
121,708	-				+0.4
121,708	-				+2.8
121,708	-				+0.2
121,708	-				-2.7
121,708	-				-2.5
121,708	-				+1.7
121,708	-				+0.1
121,708	-				+3.0
121,708	-				+3.4
121,708	-				+1.3
121,708	-				+2.0
121,709	+				-3.9
121,709	+				-0.9
121,710	-				+1.8
121,710	-				+1.4
121,733	+				+0.3
121,733	+				+0.8
121,733	+				+0.2
121,733	+				+0.3
121,734	-				-1.1
121,734	-				+2.8
121,734	-				-2.0
121,781	-				-2.5
121,826	+				-1.4
121,826	+				+0.2
121,853	+				+0.6
121,853	+				-0.4
121,853	+				-0.8
121,853	+				-0.8
121,853	+				-0.3
121,907	+				-1.4
121,908	-				-2.7
121,930	+				-2.1
121,931	-				+3.2
121,931	-				+3.5
121,948	+				+2.9
121,949	-				+1.3
121,950	+				+2.0
121,951	-				+1.7
121,963	-				-1.9
121,987	-				-1.9
122,031	-				-0.2
122,038	+				+1.6
122,038	+				+2.3
122,044	-				+1.5
122,047	-				-0.9