Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3848

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,948,467	+		Ga0059261_3847	0.67	+0.2
3,948,468	-		Ga0059261_3847	0.67	-0.8
3,948,622	+		Ga0059261_3847	0.75	-2.2
3,948,623	-		Ga0059261_3847	0.75	+1.8
3,948,694	+		Ga0059261_3847	0.79	-2.5
3,948,704	-		Ga0059261_3847	0.80	+0.7
3,948,817	+		Ga0059261_3847	0.85	-0.7
3,948,818	-		Ga0059261_3847	0.85	-1.5
3,948,836	-		Ga0059261_3847	0.86	-0.3
3,948,942	+				-0.3
3,949,039	+				+1.3
3,949,039	+				-0.5
3,949,039	+				-1.3
3,949,039	+				+2.0
3,949,039	+				+2.7
3,949,040	-				-0.1
3,949,040	-				+0.0
3,949,137	+				-0.3
3,949,138	-				+1.6
3,949,138	-				-1.3
3,949,138	-				-0.2
3,949,138	-				-1.3
3,949,138	-				-0.5
3,949,286	+		Ga0059261_3848	0.11	-0.4
3,949,286	+		Ga0059261_3848	0.11	+1.5
3,949,287	-		Ga0059261_3848	0.11	+2.9
3,949,287	-		Ga0059261_3848	0.11	+2.9
3,949,391	+		Ga0059261_3848	0.18	-0.1
3,949,391	+		Ga0059261_3848	0.18	+0.5
3,949,391	+		Ga0059261_3848	0.18	+1.9
3,949,391	+		Ga0059261_3848	0.18	-0.0
3,949,391	+		Ga0059261_3848	0.18	+1.1
3,949,391	+		Ga0059261_3848	0.18	-0.8
3,949,391	+		Ga0059261_3848	0.18	+0.0
3,949,392	-		Ga0059261_3848	0.18	+0.5
3,949,392	-		Ga0059261_3848	0.18	-1.1
3,949,392	-		Ga0059261_3848	0.18	+0.6
3,949,392	-				+1.0
3,949,392	-		Ga0059261_3848	0.18	+0.8
3,949,392	-		Ga0059261_3848	0.18	-1.0
3,949,392	-		Ga0059261_3848	0.18	+0.9
3,949,392	-		Ga0059261_3848	0.18	-1.1
3,949,392	-		Ga0059261_3848	0.18	-0.5
3,949,392	-		Ga0059261_3848	0.18	+0.0
3,949,392	-		Ga0059261_3848	0.18	-1.8
3,949,392	-		Ga0059261_3848	0.18	-1.3
3,949,392	-		Ga0059261_3848	0.18	-0.7
3,949,392	-		Ga0059261_3848	0.18	-0.5
3,949,392	-		Ga0059261_3848	0.18	+0.7
3,949,392	-		Ga0059261_3848	0.18	+2.6
3,949,448	+		Ga0059261_3848	0.22	-2.3
3,949,448	+		Ga0059261_3848	0.22	+1.3
3,949,448	+		Ga0059261_3848	0.22	+1.2
3,949,448	+		Ga0059261_3848	0.22	-0.4
3,949,448	+		Ga0059261_3848	0.22	-1.2
3,949,449	-		Ga0059261_3848	0.22	-0.6
3,949,576	+				+2.6
3,949,576	+		Ga0059261_3848	0.30	-1.0
3,949,576	+		Ga0059261_3848	0.30	+0.3
3,949,576	+		Ga0059261_3848	0.30	-1.3
3,949,576	+		Ga0059261_3848	0.30	-0.0
3,949,577	-		Ga0059261_3848	0.30	+5.2
3,949,610	+		Ga0059261_3848	0.33	+2.6
3,949,610	+		Ga0059261_3848	0.33	+1.0
3,949,610	+		Ga0059261_3848	0.33	+0.9
3,949,610	+		Ga0059261_3848	0.33	+1.6
3,949,610	+		Ga0059261_3848	0.33	-3.0
3,949,610	+		Ga0059261_3848	0.33	+0.3
3,949,611	-		Ga0059261_3848	0.33	-2.3
3,949,611	-		Ga0059261_3848	0.33	+1.3
3,949,611	-		Ga0059261_3848	0.33	+3.0
3,949,611	-		Ga0059261_3848	0.33	+0.1
3,949,611	-		Ga0059261_3848	0.33	+1.0
3,949,619	+		Ga0059261_3848	0.33	+0.9
3,949,619	+		Ga0059261_3848	0.33	+2.0
3,949,631	+		Ga0059261_3848	0.34	-0.5
3,949,631	+		Ga0059261_3848	0.34	-0.2
3,949,632	-		Ga0059261_3848	0.34	+0.2
3,949,680	+		Ga0059261_3848	0.37	+0.4
3,949,680	+		Ga0059261_3848	0.37	-0.2
3,949,681	-		Ga0059261_3848	0.37	+0.3
3,949,812	-		Ga0059261_3848	0.46	-1.3
3,949,812	-		Ga0059261_3848	0.46	+0.6
3,949,889	+		Ga0059261_3848	0.51	+1.7
3,949,889	+		Ga0059261_3848	0.51	+0.3
3,949,890	-		Ga0059261_3848	0.51	+0.5
3,949,890	-		Ga0059261_3848	0.51	+0.3
3,949,890	-		Ga0059261_3848	0.51	+0.4
3,949,891	+		Ga0059261_3848	0.51	+1.0
3,949,891	+		Ga0059261_3848	0.51	-1.1
3,949,892	-		Ga0059261_3848	0.51	-0.2
3,949,892	-		Ga0059261_3848	0.51	-2.2
3,949,892	-		Ga0059261_3848	0.51	+1.5
3,949,892	-		Ga0059261_3848	0.51	-0.6
3,949,967	+		Ga0059261_3848	0.56	-2.4
3,949,967	+		Ga0059261_3848	0.56	+1.1
3,949,968	-		Ga0059261_3848	0.56	+0.5
3,949,968	-		Ga0059261_3848	0.56	-0.0
3,949,968	-		Ga0059261_3848	0.56	+0.1
3,949,979	+		Ga0059261_3848	0.57	-0.1
3,949,979	+		Ga0059261_3848	0.57	-1.4
3,949,980	-		Ga0059261_3848	0.57	-0.5
3,949,980	-		Ga0059261_3848	0.57	+1.2
3,949,980	-		Ga0059261_3848	0.57	-0.6
3,949,980	-		Ga0059261_3848	0.57	+0.6
3,949,980	-		Ga0059261_3848	0.57	-1.0
3,949,980	-		Ga0059261_3848	0.57	+1.3
3,949,980	-		Ga0059261_3848	0.57	-2.8
3,949,981	+		Ga0059261_3848	0.57	+0.4
3,950,258	+		Ga0059261_3848	0.76	+0.2
3,950,291	+		Ga0059261_3848	0.78	-2.2
3,950,291	+		Ga0059261_3848	0.78	+1.9
3,950,291	+		Ga0059261_3848	0.78	-1.0
3,950,291	+		Ga0059261_3848	0.78	-0.1
3,950,291	+		Ga0059261_3848	0.78	-0.9
3,950,292	-		Ga0059261_3848	0.78	+0.4
3,950,292	-		Ga0059261_3848	0.78	-1.8
3,950,330	+		Ga0059261_3848	0.80	+2.4
3,950,330	+		Ga0059261_3848	0.80	-2.0
3,950,331	-		Ga0059261_3848	0.81	-1.7
3,950,481	-				+0.9
3,950,481	-				+1.9
3,950,481	-				-0.4
3,950,525	+				-0.2
3,950,588	+				-1.0
3,950,588	+				+0.7
3,950,588	+				-2.6
3,950,588	+				-2.4
3,950,589	-				-0.7
3,950,589	-				-1.0
3,950,589	-				-1.9
3,950,589	-				+0.4
3,950,589	-				-0.6
3,950,806	+		Ga0059261_3849	0.11	-1.9
3,950,806	+		Ga0059261_3849	0.11	+0.4
3,950,807	-		Ga0059261_3849	0.11	+0.5
3,950,807	-		Ga0059261_3849	0.11	+1.5
3,951,015	+		Ga0059261_3849	0.26	-0.7
3,951,015	+		Ga0059261_3849	0.26	-1.6
3,951,015	+		Ga0059261_3849	0.26	-1.3
3,951,015	+		Ga0059261_3849	0.26	-1.4
3,951,015	+		Ga0059261_3849	0.26	+0.6
3,951,016	-		Ga0059261_3849	0.26	+0.4
3,951,016	-		Ga0059261_3849	0.26	-1.3
3,951,016	-		Ga0059261_3849	0.26	+0.7
3,951,016	-		Ga0059261_3849	0.26	+1.8
3,951,016	-		Ga0059261_3849	0.26	-1.7
3,951,016	-		Ga0059261_3849	0.26	+0.3
3,951,016	-		Ga0059261_3849	0.26	+1.4
3,951,021	+		Ga0059261_3849	0.27	-1.9
3,951,021	+		Ga0059261_3849	0.27	+0.2
3,951,022	-		Ga0059261_3849	0.27	-0.2
3,951,058	+		Ga0059261_3849	0.29	+1.3
3,951,058	+		Ga0059261_3849	0.29	+1.0
3,951,059	-		Ga0059261_3849	0.29	-1.8
3,951,059	-		Ga0059261_3849	0.29	+2.6
3,951,149	-		Ga0059261_3849	0.36	-0.4
3,951,149	-		Ga0059261_3849	0.36	+0.8
3,951,149	-		Ga0059261_3849	0.36	-1.1
3,951,149	-		Ga0059261_3849	0.36	-1.7
3,951,208	+		Ga0059261_3849	0.40	-0.8
3,951,222	+		Ga0059261_3849	0.41	-1.9
3,951,222	+		Ga0059261_3849	0.41	+2.6
3,951,222	+		Ga0059261_3849	0.41	-0.8
3,951,222	+		Ga0059261_3849	0.41	-0.3
3,951,222	+		Ga0059261_3849	0.41	-0.5
3,951,222	+		Ga0059261_3849	0.41	-0.4
3,951,222	+		Ga0059261_3849	0.41	-2.2
3,951,222	+		Ga0059261_3849	0.41	+0.0
3,951,223	-		Ga0059261_3849	0.41	-1.7
3,951,223	-		Ga0059261_3849	0.41	-0.4
3,951,240	+				+0.0
3,951,240	+		Ga0059261_3849	0.42	+0.2
3,951,241	-		Ga0059261_3849	0.42	+0.1
3,951,241	-		Ga0059261_3849	0.42	+2.6
3,951,241	-		Ga0059261_3849	0.42	-0.9
3,951,291	+		Ga0059261_3849	0.46	+1.7
3,951,291	+		Ga0059261_3849	0.46	-1.9
3,951,292	-		Ga0059261_3849	0.46	-0.9
3,951,292	-		Ga0059261_3849	0.46	-1.2
3,951,292	-		Ga0059261_3849	0.46	+0.0
3,951,334	-		Ga0059261_3849	0.49	-0.8
3,951,501	+		Ga0059261_3849	0.61	+0.0
3,951,501	+		Ga0059261_3849	0.61	-1.1
3,951,501	+		Ga0059261_3849	0.61	+0.5
3,951,501	+		Ga0059261_3849	0.61	-2.2
3,951,501	+		Ga0059261_3849	0.61	+1.0
3,951,502	-		Ga0059261_3849	0.61	-0.4
3,951,502	-		Ga0059261_3849	0.61	+0.2
3,951,502	-		Ga0059261_3849	0.61	-1.0
3,951,502	-		Ga0059261_3849	0.61	-0.6
3,951,502	-		Ga0059261_3849	0.61	+0.8
3,951,502	-		Ga0059261_3849	0.61	-0.3
3,951,502	-		Ga0059261_3849	0.61	-0.2
3,951,528	+		Ga0059261_3849	0.62	-1.0
3,951,529	-		Ga0059261_3849	0.62	-1.1
3,951,529	-				-0.5