Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3225

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,354,396	+		Ga0059261_3223	0.15	-0.6
3,354,418	-		Ga0059261_3223	0.19	-0.8
3,354,432	+		Ga0059261_3223	0.22	-0.2
3,354,433	-		Ga0059261_3223	0.22	+1.5
3,354,433	-		Ga0059261_3223	0.22	-0.1
3,354,433	-		Ga0059261_3223	0.22	-1.4
3,354,435	+		Ga0059261_3223	0.22	-2.1
3,354,435	+		Ga0059261_3223	0.22	+1.1
3,354,435	+		Ga0059261_3223	0.22	+0.5
3,354,435	+		Ga0059261_3223	0.22	+0.3
3,354,436	-		Ga0059261_3223	0.23	-1.3
3,354,436	-		Ga0059261_3223	0.23	+0.3
3,354,436	-		Ga0059261_3223	0.23	-0.1
3,354,436	-		Ga0059261_3223	0.23	-1.1
3,354,447	+		Ga0059261_3223	0.25	-2.4
3,354,448	-		Ga0059261_3223	0.25	-0.7
3,354,450	+		Ga0059261_3223	0.25	+1.8
3,354,450	+		Ga0059261_3223	0.25	+1.3
3,354,450	+		Ga0059261_3223	0.25	+2.6
3,354,450	+		Ga0059261_3223	0.25	+1.9
3,354,450	+		Ga0059261_3223	0.25	-1.2
3,354,450	+		Ga0059261_3223	0.25	-0.5
3,354,451	-		Ga0059261_3223	0.25	+0.9
3,354,451	-		Ga0059261_3223	0.25	-1.3
3,354,451	-		Ga0059261_3223	0.25	+0.3
3,354,451	-		Ga0059261_3223	0.25	+0.5
3,354,468	+		Ga0059261_3223	0.29	+1.8
3,354,468	+		Ga0059261_3223	0.29	-0.4
3,354,468	+		Ga0059261_3223	0.29	-1.0
3,354,469	-		Ga0059261_3223	0.29	-0.2
3,354,469	-		Ga0059261_3223	0.29	+2.1
3,354,469	-				+1.7
3,354,492	+		Ga0059261_3223	0.33	+2.5
3,354,492	+		Ga0059261_3223	0.33	+2.8
3,354,501	+		Ga0059261_3223	0.35	-0.5
3,354,501	+		Ga0059261_3223	0.35	+0.4
3,354,501	+		Ga0059261_3223	0.35	-1.3
3,354,501	+		Ga0059261_3223	0.35	+0.4
3,354,502	-		Ga0059261_3223	0.35	-0.2
3,354,502	-		Ga0059261_3223	0.35	+2.1
3,354,502	-		Ga0059261_3223	0.35	-2.0
3,354,502	-		Ga0059261_3223	0.35	-0.9
3,354,502	-		Ga0059261_3223	0.35	+2.2
3,354,504	+		Ga0059261_3223	0.35	-1.3
3,354,504	+		Ga0059261_3223	0.35	-0.3
3,354,504	+		Ga0059261_3223	0.35	+0.9
3,354,504	+		Ga0059261_3223	0.35	-0.3
3,354,504	+		Ga0059261_3223	0.35	+0.9
3,354,504	+		Ga0059261_3223	0.35	-0.6
3,354,504	+		Ga0059261_3223	0.35	-1.7
3,354,504	+		Ga0059261_3223	0.35	+0.7
3,354,504	+		Ga0059261_3223	0.35	-1.5
3,354,504	-		Ga0059261_3223	0.35	+1.3
3,354,505	-		Ga0059261_3223	0.36	+1.0
3,354,505	-		Ga0059261_3223	0.36	+0.7
3,354,505	-		Ga0059261_3223	0.36	-0.0
3,354,505	-		Ga0059261_3223	0.36	+1.3
3,354,505	-		Ga0059261_3223	0.36	-0.1
3,354,505	-		Ga0059261_3223	0.36	-1.2
3,354,505	-		Ga0059261_3223	0.36	+0.2
3,354,505	-		Ga0059261_3223	0.36	+0.5
3,354,508	-		Ga0059261_3223	0.36	-1.3
3,354,522	+		Ga0059261_3223	0.39	-2.0
3,354,523	-		Ga0059261_3223	0.39	-0.5
3,354,525	+		Ga0059261_3223	0.39	+0.1
3,354,525	+		Ga0059261_3223	0.39	-0.6
3,354,525	+		Ga0059261_3223	0.39	+0.3
3,354,525	+		Ga0059261_3223	0.39	+0.1
3,354,525	+		Ga0059261_3223	0.39	-0.0
3,354,525	+		Ga0059261_3223	0.39	+0.9
3,354,525	+		Ga0059261_3223	0.39	+1.3
3,354,525	+		Ga0059261_3223	0.39	-0.6
3,354,525	+		Ga0059261_3223	0.39	-0.7
3,354,525	+		Ga0059261_3223	0.39	-0.2
3,354,526	-		Ga0059261_3223	0.40	-2.0
3,354,526	-		Ga0059261_3223	0.40	-1.3
3,354,526	-		Ga0059261_3223	0.40	-0.1
3,354,526	-		Ga0059261_3223	0.40	-0.5
3,354,526	-		Ga0059261_3223	0.40	+2.1
3,354,526	-		Ga0059261_3223	0.40	-0.2
3,354,526	-		Ga0059261_3223	0.40	+0.5
3,354,526	-		Ga0059261_3223	0.40	+1.0
3,354,526	-		Ga0059261_3223	0.40	-0.1
3,354,526	-		Ga0059261_3223	0.40	-2.5
3,354,526	-		Ga0059261_3223	0.40	+1.3
3,354,526	-		Ga0059261_3223	0.40	+0.9
3,354,526	-		Ga0059261_3223	0.40	-0.9
3,354,526	-		Ga0059261_3223	0.40	+0.9
3,354,526	-		Ga0059261_3223	0.40	-0.5
3,354,526	-		Ga0059261_3223	0.40	+0.2
3,354,526	-		Ga0059261_3223	0.40	-1.6
3,354,526	-		Ga0059261_3223	0.40	-0.7
3,354,526	-		Ga0059261_3223	0.40	+0.1
3,354,526	-		Ga0059261_3223	0.40	+0.5
3,354,531	+		Ga0059261_3223	0.40	+0.2
3,354,531	+		Ga0059261_3223	0.40	+0.5
3,354,531	+		Ga0059261_3223	0.40	-1.2
3,354,531	+		Ga0059261_3223	0.40	-1.5
3,354,532	-		Ga0059261_3223	0.41	+1.5
3,354,532	-		Ga0059261_3223	0.41	-0.2
3,354,532	-		Ga0059261_3223	0.41	+0.8
3,354,532	-		Ga0059261_3223	0.41	-2.0
3,354,532	-		Ga0059261_3223	0.41	+1.9
3,354,532	-		Ga0059261_3223	0.41	+0.6
3,354,711	+				+1.1
3,354,712	-		Ga0059261_3223	0.74	+1.1
3,354,786	+		Ga0059261_3223	0.88	-0.7
3,354,787	-		Ga0059261_3223	0.88	-0.6
3,354,847	-				-0.8
3,354,847	-				-0.4
3,354,912	+		Ga0059261_3224	0.15	-1.9
3,354,912	+		Ga0059261_3224	0.15	-0.3
3,354,913	-		Ga0059261_3224	0.15	+0.4
3,354,913	-		Ga0059261_3224	0.15	+0.3
3,354,913	-		Ga0059261_3224	0.15	+0.6
3,354,913	-		Ga0059261_3224	0.15	-0.9
3,354,935	-		Ga0059261_3224	0.20	-0.5
3,355,081	+		Ga0059261_3224	0.53	-2.1
3,355,081	+		Ga0059261_3224	0.53	+0.9
3,355,081	+		Ga0059261_3224	0.53	-1.8
3,355,081	+		Ga0059261_3224	0.53	-0.9
3,355,081	+		Ga0059261_3224	0.53	+3.0
3,355,081	+		Ga0059261_3224	0.53	+0.1
3,355,082	-		Ga0059261_3224	0.53	+2.0
3,355,082	-		Ga0059261_3224	0.53	+1.0
3,355,082	-		Ga0059261_3224	0.53	-0.2
3,355,082	-		Ga0059261_3224	0.53	-0.5
3,355,082	-		Ga0059261_3224	0.53	-2.2
3,355,197	+		Ga0059261_3224	0.79	-0.5
3,355,197	+		Ga0059261_3224	0.79	-0.6
3,355,197	+		Ga0059261_3224	0.79	-1.0
3,355,198	-		Ga0059261_3224	0.79	+1.1
3,355,198	-		Ga0059261_3224	0.79	-0.8
3,355,198	-		Ga0059261_3224	0.79	-0.3
3,355,198	-		Ga0059261_3224	0.79	+0.4
3,355,198	-		Ga0059261_3224	0.79	+1.2
3,355,198	-		Ga0059261_3224	0.79	-1.7
3,355,239	+		Ga0059261_3224	0.88	+1.7
3,355,240	-		Ga0059261_3224	0.88	+2.4
3,355,240	-		Ga0059261_3224	0.88	+0.5
3,355,240	-		Ga0059261_3224	0.88	-0.2
3,355,240	-		Ga0059261_3224	0.88	-1.6
3,355,284	+				-1.9
3,355,284	+				+2.7
3,355,285	-				+0.1
3,355,332	-				+0.3
3,355,415	+				+0.2
3,355,415	+				-0.6
3,355,415	+				-1.2
3,355,416	-				+1.6
3,355,416	-				+2.1
3,355,620	-		Ga0059261_3225	0.24	-0.5
3,355,620	-		Ga0059261_3225	0.24	-0.2
3,355,620	-		Ga0059261_3225	0.24	+1.1
3,355,733	+				+1.5
3,355,733	+		Ga0059261_3225	0.33	-0.9
3,355,734	-		Ga0059261_3225	0.33	+0.4
3,355,734	-		Ga0059261_3225	0.33	-2.6
3,355,734	-		Ga0059261_3225	0.33	-1.4
3,355,734	-		Ga0059261_3225	0.33	-1.3
3,355,734	-		Ga0059261_3225	0.33	-1.0
3,355,758	-		Ga0059261_3225	0.35	-0.0
3,355,791	+				+2.1
3,355,976	+		Ga0059261_3225	0.52	-1.8
3,355,977	-		Ga0059261_3225	0.52	+0.5
3,355,977	-		Ga0059261_3225	0.52	+0.8
3,355,977	-		Ga0059261_3225	0.52	-0.2
3,355,977	-		Ga0059261_3225	0.52	-0.6
3,355,977	-		Ga0059261_3225	0.52	+0.5
3,356,004	+		Ga0059261_3225	0.55	-0.4
3,356,005	-		Ga0059261_3225	0.55	-0.7
3,356,303	+		Ga0059261_3225	0.79	+4.1
3,356,304	-		Ga0059261_3225	0.79	+0.0
3,356,304	-		Ga0059261_3225	0.79	-1.0
3,356,304	-		Ga0059261_3225	0.79	+1.5
3,356,406	-		Ga0059261_3225	0.87	+0.8
3,356,406	-		Ga0059261_3225	0.87	-1.0
3,356,629	+				+0.5
3,356,629	+				+0.4
3,356,630	-				+0.0
3,356,630	-				+0.3
3,356,630	-				-1.3
3,356,657	+				+0.8
3,356,657	+				+0.8
3,356,657	+				+2.3
3,356,658	-				-1.4
3,356,658	-				+1.3
3,356,658	-				+0.7
3,356,947	+		Ga0059261_3226	0.37	-1.3
3,356,947	+		Ga0059261_3226	0.37	+0.7
3,356,947	+		Ga0059261_3226	0.37	-0.1
3,356,947	+		Ga0059261_3226	0.37	+0.9
3,356,947	+		Ga0059261_3226	0.37	+0.3
3,356,948	-		Ga0059261_3226	0.37	+0.0
3,356,948	-		Ga0059261_3226	0.37	-0.4
3,356,948	-		Ga0059261_3226	0.37	+0.7
3,356,948	-		Ga0059261_3226	0.37	+1.3
3,356,948	-		Ga0059261_3226	0.37	+0.8
3,356,948	-		Ga0059261_3226	0.37	+1.0
3,356,948	-		Ga0059261_3226	0.37	-2.5
3,356,948	-		Ga0059261_3226	0.37	-0.4
3,356,962	-		Ga0059261_3226	0.38	-0.8
3,356,962	-		Ga0059261_3226	0.38	+0.7
3,357,148	-		Ga0059261_3226	0.61	-1.3
3,357,148	-		Ga0059261_3226	0.61	+0.1
3,357,148	-		Ga0059261_3226	0.61	+0.7
3,357,151	+		Ga0059261_3226	0.61	-0.3
3,357,151	+		Ga0059261_3226	0.61	-0.1
3,357,151	+		Ga0059261_3226	0.61	-2.7
3,357,151	+		Ga0059261_3226	0.61	-0.4
3,357,151	+		Ga0059261_3226	0.61	-0.8
3,357,151	+		Ga0059261_3226	0.61	+0.4
3,357,151	+		Ga0059261_3226	0.61	-0.4
3,357,151	+		Ga0059261_3226	0.61	+2.3
3,357,152	-		Ga0059261_3226	0.61	+0.3
3,357,152	-		Ga0059261_3226	0.61	-1.6
3,357,152	-		Ga0059261_3226	0.61	+0.1
3,357,152	-		Ga0059261_3226	0.61	+1.7
3,357,425	+				-1.7
3,357,425	+				-0.9
3,357,425	+				+0.1
3,357,425	+				+1.6
3,357,522	+				+0.3
3,357,526	-				+0.9