Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0555

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0554 and Ga0059261_0555 are separated by 124 nucleotidesGa0059261_0555 and Ga0059261_0556 overlap by 4 nucleotides Ga0059261_0554: Ga0059261_0554 - Nucleoside H+ symporter, at 568,215 to 569,465 _0554 Ga0059261_0555: Ga0059261_0555 - transcriptional regulator, LacI family, at 569,590 to 570,588 _0555 Ga0059261_0556: Ga0059261_0556 - Signal transduction histidine kinase, at 570,585 to 571,946 _0556 Position (kb) 569 570 571Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 568.692 kb on - strand, within Ga0059261_0554at 568.724 kb on + strandat 568.725 kb on - strand, within Ga0059261_0554at 568.725 kb on - strand, within Ga0059261_0554at 568.726 kb on + strand, within Ga0059261_0554at 568.727 kb on - strand, within Ga0059261_0554at 568.727 kb on - strand, within Ga0059261_0554at 568.727 kb on - strand, within Ga0059261_0554at 568.738 kb on + strand, within Ga0059261_0554at 568.739 kb on - strand, within Ga0059261_0554at 568.739 kb on - strand, within Ga0059261_0554at 568.744 kb on + strand, within Ga0059261_0554at 568.744 kb on + strand, within Ga0059261_0554at 568.744 kb on + strand, within Ga0059261_0554at 568.744 kb on + strand, within Ga0059261_0554at 568.744 kb on + strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.745 kb on - strand, within Ga0059261_0554at 568.747 kb on + strand, within Ga0059261_0554at 568.747 kb on + strand, within Ga0059261_0554at 568.747 kb on + strand, within Ga0059261_0554at 568.747 kb on + strandat 568.747 kb on + strand, within Ga0059261_0554at 568.747 kb on + strand, within Ga0059261_0554at 568.747 kb on + strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.748 kb on - strand, within Ga0059261_0554at 568.798 kb on + strandat 568.799 kb on - strand, within Ga0059261_0554at 568.799 kb on - strand, within Ga0059261_0554at 568.799 kb on - strand, within Ga0059261_0554at 568.903 kb on + strand, within Ga0059261_0554at 568.903 kb on + strandat 568.903 kb on + strand, within Ga0059261_0554at 568.903 kb on + strand, within Ga0059261_0554at 568.903 kb on + strand, within Ga0059261_0554at 568.904 kb on - strand, within Ga0059261_0554at 568.904 kb on - strand, within Ga0059261_0554at 568.904 kb on - strand, within Ga0059261_0554at 569.098 kb on + strand, within Ga0059261_0554at 569.098 kb on + strand, within Ga0059261_0554at 569.098 kb on + strand, within Ga0059261_0554at 569.098 kb on + strand, within Ga0059261_0554at 569.098 kb on + strand, within Ga0059261_0554at 569.099 kb on - strand, within Ga0059261_0554at 569.099 kb on - strand, within Ga0059261_0554at 569.099 kb on - strand, within Ga0059261_0554at 569.099 kb on - strand, within Ga0059261_0554at 569.110 kb on + strand, within Ga0059261_0554at 569.110 kb on + strand, within Ga0059261_0554at 569.110 kb on + strand, within Ga0059261_0554at 569.110 kb on + strand, within Ga0059261_0554at 569.111 kb on - strand, within Ga0059261_0554at 569.111 kb on - strand, within Ga0059261_0554at 569.230 kb on + strand, within Ga0059261_0554at 569.484 kb on + strandat 569.484 kb on + strandat 569.484 kb on + strandat 569.485 kb on - strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.486 kb on + strandat 569.487 kb on - strandat 569.487 kb on - strandat 569.487 kb on - strandat 569.487 kb on - strandat 569.487 kb on - strandat 569.487 kb on - strandat 569.513 kb on - strandat 569.533 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.576 kb on + strandat 569.577 kb on - strandat 569.577 kb on - strandat 569.722 kb on + strandat 569.722 kb on + strand, within Ga0059261_0555at 569.723 kb on - strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.857 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.908 kb on + strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 569.909 kb on - strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.034 kb on + strand, within Ga0059261_0555at 570.035 kb on - strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strand, within Ga0059261_0555at 570.062 kb on + strandat 570.062 kb on + strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strandat 570.063 kb on - strand, within Ga0059261_0555at 570.063 kb on - strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.066 kb on + strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.067 kb on - strand, within Ga0059261_0555at 570.247 kb on + strand, within Ga0059261_0555at 570.247 kb on + strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.248 kb on - strand, within Ga0059261_0555at 570.684 kb on - strandat 570.848 kb on - strand, within Ga0059261_0556at 570.848 kb on - strand, within Ga0059261_0556at 570.848 kb on - strand, within Ga0059261_0556at 570.909 kb on + strand, within Ga0059261_0556

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
568,692 - Ga0059261_0554 0.38 -0.2
568,724 + +0.0
568,725 - Ga0059261_0554 0.41 +0.3
568,725 - Ga0059261_0554 0.41 -0.5
568,726 + Ga0059261_0554 0.41 +3.5
568,727 - Ga0059261_0554 0.41 +0.3
568,727 - Ga0059261_0554 0.41 +1.0
568,727 - Ga0059261_0554 0.41 +1.6
568,738 + Ga0059261_0554 0.42 -0.5
568,739 - Ga0059261_0554 0.42 +0.8
568,739 - Ga0059261_0554 0.42 -0.8
568,744 + Ga0059261_0554 0.42 +1.0
568,744 + Ga0059261_0554 0.42 +0.3
568,744 + Ga0059261_0554 0.42 -0.4
568,744 + Ga0059261_0554 0.42 -1.8
568,744 + Ga0059261_0554 0.42 +0.7
568,745 - Ga0059261_0554 0.42 +0.5
568,745 - Ga0059261_0554 0.42 +0.9
568,745 - Ga0059261_0554 0.42 -1.7
568,745 - Ga0059261_0554 0.42 -0.3
568,745 - Ga0059261_0554 0.42 +0.3
568,745 - Ga0059261_0554 0.42 -0.8
568,747 + Ga0059261_0554 0.43 +0.2
568,747 + Ga0059261_0554 0.43 -0.0
568,747 + Ga0059261_0554 0.43 +2.2
568,747 + +1.0
568,747 + Ga0059261_0554 0.43 -1.8
568,747 + Ga0059261_0554 0.43 -1.0
568,747 + Ga0059261_0554 0.43 -1.0
568,748 - Ga0059261_0554 0.43 +3.0
568,748 - Ga0059261_0554 0.43 +2.4
568,748 - Ga0059261_0554 0.43 +1.5
568,748 - Ga0059261_0554 0.43 +0.0
568,748 - Ga0059261_0554 0.43 +0.1
568,748 - Ga0059261_0554 0.43 +1.2
568,748 - Ga0059261_0554 0.43 -2.2
568,798 + +2.0
568,799 - Ga0059261_0554 0.47 +0.3
568,799 - Ga0059261_0554 0.47 +0.9
568,799 - Ga0059261_0554 0.47 -0.4
568,903 + Ga0059261_0554 0.55 +0.3
568,903 + +1.0
568,903 + Ga0059261_0554 0.55 -0.4
568,903 + Ga0059261_0554 0.55 -1.0
568,903 + Ga0059261_0554 0.55 +0.6
568,904 - Ga0059261_0554 0.55 +1.7
568,904 - Ga0059261_0554 0.55 -0.8
568,904 - Ga0059261_0554 0.55 +1.5
569,098 + Ga0059261_0554 0.71 -0.5
569,098 + Ga0059261_0554 0.71 -0.1
569,098 + Ga0059261_0554 0.71 -0.3
569,098 + Ga0059261_0554 0.71 +0.6
569,098 + Ga0059261_0554 0.71 +1.5
569,099 - Ga0059261_0554 0.71 -0.0
569,099 - Ga0059261_0554 0.71 +0.5
569,099 - Ga0059261_0554 0.71 -2.1
569,099 - Ga0059261_0554 0.71 -0.5
569,110 + Ga0059261_0554 0.72 -0.8
569,110 + Ga0059261_0554 0.72 +1.5
569,110 + Ga0059261_0554 0.72 +0.7
569,110 + Ga0059261_0554 0.72 -1.3
569,111 - Ga0059261_0554 0.72 -1.0
569,111 - Ga0059261_0554 0.72 -2.0
569,230 + Ga0059261_0554 0.81 -1.1
569,484 + -0.0
569,484 + -0.8
569,484 + -0.8
569,485 - +0.0
569,486 + -1.5
569,486 + -1.0
569,486 + +0.5
569,486 + -0.7
569,486 + -0.3
569,486 + -0.6
569,486 + -1.5
569,486 + -2.0
569,486 + +0.2
569,486 + -1.7
569,486 + -0.7
569,486 + +1.2
569,487 - +0.5
569,487 - +0.5
569,487 - -0.0
569,487 - -1.2
569,487 - +0.7
569,487 - -0.8
569,513 - -0.8
569,533 + +0.5
569,576 + -0.5
569,576 + -1.4
569,576 + -1.0
569,576 + -0.9
569,576 + +0.6
569,576 + +0.0
569,576 + -0.5
569,577 - -1.5
569,577 - +1.5
569,722 + +0.0
569,722 + Ga0059261_0555 0.13 -0.3
569,723 - Ga0059261_0555 0.13 -1.5
569,857 + Ga0059261_0555 0.27 -0.7
569,857 + Ga0059261_0555 0.27 +1.3
569,857 + Ga0059261_0555 0.27 -1.5
569,908 + Ga0059261_0555 0.32 +1.0
569,908 + Ga0059261_0555 0.32 -0.0
569,908 + Ga0059261_0555 0.32 -0.8
569,908 + Ga0059261_0555 0.32 -0.2
569,909 - Ga0059261_0555 0.32 +2.0
569,909 - Ga0059261_0555 0.32 +2.8
569,909 - Ga0059261_0555 0.32 +0.7
569,909 - Ga0059261_0555 0.32 -0.9
570,034 + Ga0059261_0555 0.44 +0.5
570,034 + Ga0059261_0555 0.44 +0.5
570,034 + Ga0059261_0555 0.44 -0.9
570,034 + Ga0059261_0555 0.44 -0.4
570,035 - Ga0059261_0555 0.45 -0.5
570,062 + Ga0059261_0555 0.47 -0.5
570,062 + Ga0059261_0555 0.47 -0.6
570,062 + Ga0059261_0555 0.47 -0.5
570,062 + Ga0059261_0555 0.47 +0.6
570,062 + Ga0059261_0555 0.47 +1.1
570,062 + Ga0059261_0555 0.47 +0.4
570,062 + Ga0059261_0555 0.47 -0.2
570,062 + Ga0059261_0555 0.47 +2.5
570,062 + Ga0059261_0555 0.47 +2.5
570,062 + Ga0059261_0555 0.47 +0.1
570,062 + +4.4
570,062 + Ga0059261_0555 0.47 -1.8
570,063 - Ga0059261_0555 0.47 +2.0
570,063 - Ga0059261_0555 0.47 -0.3
570,063 - Ga0059261_0555 0.47 +0.5
570,063 - Ga0059261_0555 0.47 -1.1
570,063 - Ga0059261_0555 0.47 +0.9
570,063 - Ga0059261_0555 0.47 +0.0
570,063 - Ga0059261_0555 0.47 -1.1
570,063 - Ga0059261_0555 0.47 +1.5
570,063 - +1.5
570,063 - Ga0059261_0555 0.47 -0.1
570,063 - Ga0059261_0555 0.47 -0.5
570,066 + Ga0059261_0555 0.48 -1.1
570,066 + Ga0059261_0555 0.48 -2.3
570,066 + Ga0059261_0555 0.48 -0.8
570,066 + Ga0059261_0555 0.48 +0.2
570,066 + Ga0059261_0555 0.48 +2.8
570,066 + Ga0059261_0555 0.48 +1.3
570,066 + Ga0059261_0555 0.48 -0.6
570,066 + Ga0059261_0555 0.48 +1.0
570,066 + Ga0059261_0555 0.48 -1.4
570,067 - Ga0059261_0555 0.48 -0.1
570,067 - Ga0059261_0555 0.48 +1.0
570,067 - Ga0059261_0555 0.48 -1.6
570,067 - Ga0059261_0555 0.48 +1.2
570,067 - Ga0059261_0555 0.48 -1.3
570,067 - Ga0059261_0555 0.48 +2.6
570,247 + Ga0059261_0555 0.66 -0.1
570,247 + Ga0059261_0555 0.66 -0.2
570,248 - Ga0059261_0555 0.66 -0.1
570,248 - Ga0059261_0555 0.66 -1.9
570,248 - Ga0059261_0555 0.66 -0.4
570,684 - -0.5
570,848 - Ga0059261_0556 0.19 +1.6
570,848 - Ga0059261_0556 0.19 -1.0
570,848 - Ga0059261_0556 0.19 +2.5
570,909 + Ga0059261_0556 0.24 +0.2

Or see this region's nucleotide sequence