Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0441 and Ga0059261_0442 are separated by 97 nucleotides Ga0059261_0442 and Ga0059261_0443 are separated by 336 nucleotides Ga0059261_0443 and Ga0059261_0444 overlap by 4 nucleotides Ga0059261_0444 and Ga0059261_0445 are separated by 3 nucleotides
Ga0059261_0441: Ga0059261_0441 - DNA-binding HTH domain-containing proteins, at 428,445 to 429,188
_0441
Ga0059261_0442: Ga0059261_0442 - Autoinducer synthetase, at 429,286 to 429,584
_0442
Ga0059261_0443: Ga0059261_0443 - RNA polymerase sigma factor, sigma-70 family, at 429,921 to 430,493
_0443
Ga0059261_0444: Ga0059261_0444 - Heavy-metal resistance, at 430,490 to 430,927
_0444
Ga0059261_0445: Ga0059261_0445 - hypothetical protein, at 430,931 to 431,263
_0445
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 429.106 kb on - strand, within Ga0059261_0441 at 429.157 kb on + strand at 429.189 kb on + strand at 429.190 kb on - strand at 429.190 kb on - strand at 429.199 kb on + strand at 429.199 kb on + strand at 429.200 kb on - strand at 429.200 kb on - strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.270 kb on - strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.283 kb on + strand at 429.284 kb on - strand at 429.284 kb on - strand at 429.339 kb on + strand, within Ga0059261_0442 at 429.340 kb on - strand, within Ga0059261_0442 at 429.340 kb on - strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.418 kb on + strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.419 kb on - strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.488 kb on + strand, within Ga0059261_0442 at 429.504 kb on + strand, within Ga0059261_0442 at 429.545 kb on + strand, within Ga0059261_0442 at 429.546 kb on - strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.549 kb on + strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.550 kb on - strand, within Ga0059261_0442 at 429.581 kb on + strand at 429.722 kb on + strand at 429.722 kb on + strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.723 kb on - strand at 429.794 kb on - strand at 429.794 kb on - strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.815 kb on + strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.816 kb on - strand at 429.965 kb on - strand at 429.965 kb on - strand at 430.004 kb on - strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.064 kb on + strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.065 kb on - strand, within Ga0059261_0443 at 430.095 kb on + strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.096 kb on - strand, within Ga0059261_0443 at 430.309 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand at 430.366 kb on + strand, within Ga0059261_0443 at 430.366 kb on + strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.367 kb on - strand, within Ga0059261_0443 at 430.384 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.418 kb on + strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.419 kb on - strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.420 kb on + strand, within Ga0059261_0443 at 430.421 kb on - strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.432 kb on + strand, within Ga0059261_0443 at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.518 kb on - strand at 430.810 kb on + strand, within Ga0059261_0444 at 430.811 kb on - strand, within Ga0059261_0444 at 430.893 kb on - strand at 430.893 kb on - strand at 430.893 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.907 kb on - strand at 430.912 kb on + strand at 430.912 kb on + strand at 430.932 kb on + strand at 430.932 kb on + strand at 430.933 kb on - strand at 430.933 kb on - strand at 430.985 kb on + strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.217 kb on - strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.227 kb on + strand, within Ga0059261_0445 at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.257 kb on + strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.258 kb on - strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.389 kb on + strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.390 kb on - strand at 431.395 kb on + strand at 431.395 kb on + strand at 431.396 kb on - strand at 431.396 kb on - strand at 431.406 kb on + strand at 431.406 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.414 kb on + strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand at 431.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 429,106 - Ga0059261_0441 0.89 +2.3 429,157 + +1.6 429,189 + -1.0 429,190 - -1.0 429,190 - -0.8 429,199 + -0.5 429,199 + +0.6 429,200 - +0.9 429,200 - +1.8 429,269 + +1.2 429,269 + -2.1 429,269 + -0.5 429,269 + +0.1 429,269 + +0.0 429,270 - -0.5 429,270 - +0.8 429,270 - -0.6 429,270 - -1.0 429,270 - +0.7 429,270 - +2.8 429,283 + -0.9 429,283 + -0.5 429,283 + -0.3 429,283 + +0.7 429,283 + +0.6 429,283 + -2.4 429,284 - -1.3 429,284 - -0.1 429,339 + Ga0059261_0442 0.18 +1.3 429,340 - Ga0059261_0442 0.18 -0.3 429,340 - Ga0059261_0442 0.18 +3.8 429,418 + Ga0059261_0442 0.44 +0.5 429,418 + Ga0059261_0442 0.44 +0.0 429,418 + Ga0059261_0442 0.44 +0.5 429,419 - Ga0059261_0442 0.44 -0.6 429,419 - Ga0059261_0442 0.44 -0.7 429,419 - Ga0059261_0442 0.44 +0.0 429,419 - Ga0059261_0442 0.44 -1.0 429,419 - Ga0059261_0442 0.44 +3.6 429,419 - Ga0059261_0442 0.44 +0.2 429,419 - Ga0059261_0442 0.44 -1.6 429,488 + Ga0059261_0442 0.68 +0.4 429,488 + Ga0059261_0442 0.68 -1.1 429,488 + Ga0059261_0442 0.68 +0.6 429,488 + Ga0059261_0442 0.68 +0.1 429,504 + Ga0059261_0442 0.73 -1.0 429,545 + Ga0059261_0442 0.87 -0.4 429,546 - Ga0059261_0442 0.87 -0.3 429,549 + Ga0059261_0442 0.88 +0.0 429,549 + Ga0059261_0442 0.88 +2.0 429,549 + Ga0059261_0442 0.88 +0.3 429,549 + Ga0059261_0442 0.88 +2.1 429,549 + Ga0059261_0442 0.88 +1.0 429,549 + Ga0059261_0442 0.88 -0.2 429,549 + Ga0059261_0442 0.88 +0.3 429,549 + Ga0059261_0442 0.88 +0.1 429,549 + Ga0059261_0442 0.88 -0.3 429,550 - Ga0059261_0442 0.88 +2.7 429,550 - Ga0059261_0442 0.88 -1.4 429,550 - Ga0059261_0442 0.88 +0.5 429,550 - Ga0059261_0442 0.88 +0.5 429,581 + +3.5 429,722 + +0.0 429,722 + -2.0 429,723 - +1.7 429,723 - +2.0 429,723 - +1.5 429,794 - +3.5 429,794 - +1.3 429,815 + +3.6 429,815 + -1.3 429,815 + -0.3 429,815 + +1.1 429,815 + +0.0 429,815 + -1.5 429,815 + +2.0 429,815 + -0.0 429,815 + -0.1 429,815 + +0.5 429,815 + +1.6 429,815 + +2.0 429,816 - +0.3 429,816 - -0.1 429,816 - -0.1 429,816 - +0.5 429,816 - -1.0 429,816 - +0.5 429,965 - +0.5 429,965 - +2.6 430,004 - Ga0059261_0443 0.14 +0.5 430,064 + Ga0059261_0443 0.25 -0.5 430,064 + Ga0059261_0443 0.25 +0.9 430,064 + Ga0059261_0443 0.25 -2.0 430,064 + Ga0059261_0443 0.25 +1.1 430,065 - Ga0059261_0443 0.25 +1.6 430,065 - Ga0059261_0443 0.25 -0.0 430,065 - Ga0059261_0443 0.25 -2.0 430,095 + Ga0059261_0443 0.30 -1.1 430,096 - Ga0059261_0443 0.31 +0.6 430,096 - Ga0059261_0443 0.31 -2.8 430,309 + Ga0059261_0443 0.68 -1.7 430,366 + +2.0 430,366 + Ga0059261_0443 0.78 +1.5 430,366 + Ga0059261_0443 0.78 +0.3 430,367 - Ga0059261_0443 0.78 -0.7 430,367 - Ga0059261_0443 0.78 -1.8 430,367 - Ga0059261_0443 0.78 +1.5 430,384 + Ga0059261_0443 0.81 -0.4 430,418 + Ga0059261_0443 0.87 +0.7 430,418 + Ga0059261_0443 0.87 +0.6 430,419 - Ga0059261_0443 0.87 +2.5 430,419 - Ga0059261_0443 0.87 -1.0 430,420 + Ga0059261_0443 0.87 +4.8 430,420 + Ga0059261_0443 0.87 -1.1 430,420 + Ga0059261_0443 0.87 +0.0 430,420 + Ga0059261_0443 0.87 -0.4 430,420 + Ga0059261_0443 0.87 +0.5 430,421 - Ga0059261_0443 0.87 +0.5 430,432 + Ga0059261_0443 0.89 +0.7 430,432 + Ga0059261_0443 0.89 -0.3 430,518 - -0.1 430,518 - -0.0 430,518 - +0.3 430,518 - -0.3 430,810 + Ga0059261_0444 0.73 +0.7 430,811 - Ga0059261_0444 0.73 +0.6 430,893 - +1.4 430,893 - +0.8 430,893 - -0.5 430,907 - -2.0 430,907 - -0.5 430,907 - +1.3 430,912 + -1.1 430,912 + -0.7 430,932 + +1.0 430,932 + +1.3 430,933 - +1.0 430,933 - -1.5 430,985 + Ga0059261_0445 0.16 -2.9 431,217 - Ga0059261_0445 0.86 -1.4 431,217 - Ga0059261_0445 0.86 -1.0 431,227 + Ga0059261_0445 0.89 +0.2 431,227 + Ga0059261_0445 0.89 +0.9 431,257 + +0.4 431,257 + +1.1 431,257 + +0.3 431,257 + -2.0 431,258 - +0.6 431,258 - +1.0 431,258 - -0.6 431,258 - +1.0 431,258 - +3.0 431,347 + -1.2 431,347 + +0.5 431,389 + -0.4 431,390 - +0.9 431,390 - +1.1 431,390 - -2.5 431,390 - +0.3 431,395 + +0.3 431,395 + +0.5 431,396 - -0.3 431,396 - -2.7 431,406 + +0.9 431,406 + -2.2 431,414 + -0.5 431,414 + +0.3 431,414 + +1.7 431,414 + +0.5 431,415 - -0.1 431,415 - +3.9 431,415 - -0.9 431,415 - -0.3 431,415 - +0.5 431,415 - -1.1
Or see this region's nucleotide sequence