Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18295

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18290 and CSW01_18295 are separated by 233 nucleotidesCSW01_18295 and CSW01_18300 are separated by 102 nucleotides CSW01_18290: CSW01_18290 - phenylalanine 4-monooxygenase, at 770,939 to 771,733 _18290 CSW01_18295: CSW01_18295 - acetoacetate--CoA ligase, at 771,967 to 773,917 _18295 CSW01_18300: CSW01_18300 - LysR family transcriptional regulator, at 774,020 to 774,994 _18300 Position (kb) 771 772 773 774Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 771.016 kb on - strandat 771.026 kb on + strand, within CSW01_18290at 771.037 kb on + strand, within CSW01_18290at 771.044 kb on - strand, within CSW01_18290at 771.050 kb on + strand, within CSW01_18290at 771.091 kb on - strand, within CSW01_18290at 771.105 kb on - strand, within CSW01_18290at 771.140 kb on - strand, within CSW01_18290at 771.247 kb on + strand, within CSW01_18290at 771.255 kb on - strand, within CSW01_18290at 771.347 kb on + strand, within CSW01_18290at 771.347 kb on + strand, within CSW01_18290at 771.365 kb on + strand, within CSW01_18290at 771.373 kb on - strand, within CSW01_18290at 771.422 kb on - strand, within CSW01_18290at 771.422 kb on - strand, within CSW01_18290at 771.645 kb on + strand, within CSW01_18290at 771.672 kb on - strandat 771.707 kb on + strandat 771.770 kb on + strandat 771.770 kb on + strandat 771.778 kb on - strandat 771.778 kb on - strandat 771.870 kb on + strandat 771.871 kb on + strandat 772.042 kb on + strandat 772.087 kb on + strandat 772.089 kb on + strandat 772.121 kb on + strandat 772.121 kb on + strandat 772.129 kb on - strandat 772.147 kb on + strandat 772.233 kb on - strand, within CSW01_18295at 772.246 kb on + strand, within CSW01_18295at 772.254 kb on - strand, within CSW01_18295at 772.256 kb on - strand, within CSW01_18295at 772.435 kb on + strand, within CSW01_18295at 772.489 kb on - strand, within CSW01_18295at 772.640 kb on - strand, within CSW01_18295at 772.765 kb on + strand, within CSW01_18295at 772.773 kb on - strand, within CSW01_18295at 772.803 kb on - strand, within CSW01_18295at 772.809 kb on + strand, within CSW01_18295at 772.875 kb on - strand, within CSW01_18295at 772.896 kb on + strand, within CSW01_18295at 772.899 kb on + strand, within CSW01_18295at 772.909 kb on - strand, within CSW01_18295at 772.943 kb on - strand, within CSW01_18295at 772.970 kb on + strand, within CSW01_18295at 772.975 kb on + strand, within CSW01_18295at 772.978 kb on - strand, within CSW01_18295at 772.994 kb on + strand, within CSW01_18295at 773.040 kb on + strand, within CSW01_18295at 773.097 kb on + strand, within CSW01_18295at 773.105 kb on - strand, within CSW01_18295at 773.144 kb on + strand, within CSW01_18295at 773.177 kb on + strand, within CSW01_18295at 773.184 kb on + strand, within CSW01_18295at 773.185 kb on - strand, within CSW01_18295at 773.189 kb on + strand, within CSW01_18295at 773.192 kb on - strand, within CSW01_18295at 773.192 kb on - strand, within CSW01_18295at 773.197 kb on - strand, within CSW01_18295at 773.478 kb on - strand, within CSW01_18295at 773.539 kb on + strand, within CSW01_18295at 773.574 kb on - strand, within CSW01_18295at 773.751 kb on - strandat 773.771 kb on - strandat 773.790 kb on - strandat 773.801 kb on - strandat 773.885 kb on + strandat 773.886 kb on - strandat 773.905 kb on + strandat 774.057 kb on + strandat 774.102 kb on - strandat 774.115 kb on + strandat 774.123 kb on - strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.150 kb on + strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.158 kb on - strand, within CSW01_18300at 774.175 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.177 kb on + strand, within CSW01_18300at 774.183 kb on - strand, within CSW01_18300at 774.226 kb on + strand, within CSW01_18300at 774.234 kb on - strand, within CSW01_18300at 774.276 kb on + strand, within CSW01_18300at 774.276 kb on + strand, within CSW01_18300at 774.284 kb on - strand, within CSW01_18300at 774.292 kb on - strand, within CSW01_18300at 774.319 kb on - strand, within CSW01_18300at 774.338 kb on - strand, within CSW01_18300at 774.410 kb on - strand, within CSW01_18300at 774.419 kb on + strand, within CSW01_18300at 774.450 kb on + strand, within CSW01_18300at 774.485 kb on - strand, within CSW01_18300at 774.553 kb on + strand, within CSW01_18300at 774.554 kb on + strand, within CSW01_18300at 774.562 kb on - strand, within CSW01_18300at 774.629 kb on - strand, within CSW01_18300at 774.629 kb on - strand, within CSW01_18300at 774.727 kb on + strand, within CSW01_18300at 774.749 kb on + strand, within CSW01_18300at 774.881 kb on + strand, within CSW01_18300at 774.896 kb on - strand, within CSW01_18300at 774.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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771,016 - +2.7
771,026 + CSW01_18290 0.11 +0.1
771,037 + CSW01_18290 0.12 -0.2
771,044 - CSW01_18290 0.13 +0.3
771,050 + CSW01_18290 0.14 -0.6
771,091 - CSW01_18290 0.19 +0.6
771,105 - CSW01_18290 0.21 +0.5
771,140 - CSW01_18290 0.25 +1.8
771,247 + CSW01_18290 0.39 -0.1
771,255 - CSW01_18290 0.40 -0.3
771,347 + CSW01_18290 0.51 +0.7
771,347 + CSW01_18290 0.51 -0.5
771,365 + CSW01_18290 0.54 -0.2
771,373 - CSW01_18290 0.55 +1.0
771,422 - CSW01_18290 0.61 +0.2
771,422 - CSW01_18290 0.61 +0.6
771,645 + CSW01_18290 0.89 +1.5
771,672 - +0.2
771,707 + +0.1
771,770 + -0.6
771,770 + +0.1
771,778 - -0.6
771,778 - +0.1
771,870 + -0.4
771,871 + -0.7
772,042 + -2.3
772,087 + -1.3
772,089 + +0.2
772,121 + +0.5
772,121 + +0.1
772,129 - -0.4
772,147 + -0.6
772,233 - CSW01_18295 0.14 -0.9
772,246 + CSW01_18295 0.14 -0.6
772,254 - CSW01_18295 0.15 +0.4
772,256 - CSW01_18295 0.15 -0.1
772,435 + CSW01_18295 0.24 +0.2
772,489 - CSW01_18295 0.27 +0.9
772,640 - CSW01_18295 0.34 -0.5
772,765 + CSW01_18295 0.41 -0.1
772,773 - CSW01_18295 0.41 -0.3
772,803 - CSW01_18295 0.43 -1.2
772,809 + CSW01_18295 0.43 +0.0
772,875 - CSW01_18295 0.47 -0.0
772,896 + CSW01_18295 0.48 -0.3
772,899 + CSW01_18295 0.48 -0.0
772,909 - CSW01_18295 0.48 +1.0
772,943 - CSW01_18295 0.50 -0.7
772,970 + CSW01_18295 0.51 -0.0
772,975 + CSW01_18295 0.52 -0.3
772,978 - CSW01_18295 0.52 -0.2
772,994 + CSW01_18295 0.53 -0.4
773,040 + CSW01_18295 0.55 -0.8
773,097 + CSW01_18295 0.58 -0.4
773,105 - CSW01_18295 0.58 -2.8
773,144 + CSW01_18295 0.60 -0.4
773,177 + CSW01_18295 0.62 -2.3
773,184 + CSW01_18295 0.62 -0.4
773,185 - CSW01_18295 0.62 -0.5
773,189 + CSW01_18295 0.63 -0.2
773,192 - CSW01_18295 0.63 -1.2
773,192 - CSW01_18295 0.63 +0.3
773,197 - CSW01_18295 0.63 +0.4
773,478 - CSW01_18295 0.77 +0.6
773,539 + CSW01_18295 0.81 +0.1
773,574 - CSW01_18295 0.82 -1.0
773,751 - -0.1
773,771 - -0.1
773,790 - -0.3
773,801 - -0.4
773,885 + -1.7
773,886 - -0.0
773,905 + -0.1
774,057 + +0.1
774,102 - +1.0
774,115 + -0.3
774,123 - CSW01_18300 0.11 -0.4
774,150 + CSW01_18300 0.13 +0.4
774,150 + CSW01_18300 0.13 -0.3
774,150 + CSW01_18300 0.13 +0.4
774,158 - CSW01_18300 0.14 -0.6
774,158 - CSW01_18300 0.14 -0.4
774,158 - CSW01_18300 0.14 +1.2
774,158 - CSW01_18300 0.14 -0.2
774,175 + CSW01_18300 0.16 +0.1
774,177 + CSW01_18300 0.16 -0.2
774,177 + CSW01_18300 0.16 +0.3
774,177 + CSW01_18300 0.16 +0.7
774,183 - CSW01_18300 0.17 +0.2
774,226 + CSW01_18300 0.21 -0.2
774,234 - CSW01_18300 0.22 -0.3
774,276 + CSW01_18300 0.26 -0.1
774,276 + CSW01_18300 0.26 -1.2
774,284 - CSW01_18300 0.27 -0.1
774,292 - CSW01_18300 0.28 +0.1
774,319 - CSW01_18300 0.31 -0.2
774,338 - CSW01_18300 0.33 -0.0
774,410 - CSW01_18300 0.40 -0.0
774,419 + CSW01_18300 0.41 +0.2
774,450 + CSW01_18300 0.44 +0.2
774,485 - CSW01_18300 0.48 +0.4
774,553 + CSW01_18300 0.55 +0.3
774,554 + CSW01_18300 0.55 +0.8
774,562 - CSW01_18300 0.56 +0.1
774,629 - CSW01_18300 0.62 +0.7
774,629 - CSW01_18300 0.62 +0.4
774,727 + CSW01_18300 0.73 +0.1
774,749 + CSW01_18300 0.75 -0.2
774,881 + CSW01_18300 0.88 +0.6
774,896 - CSW01_18300 0.90 +0.2
774,908 + +0.5

Or see this region's nucleotide sequence