Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18170

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18160 and CSW01_18165 are separated by 321 nucleotidesCSW01_18165 and CSW01_18170 are separated by 118 nucleotidesCSW01_18170 and CSW01_18175 are separated by 85 nucleotides CSW01_18160: CSW01_18160 - hypothetical protein, at 738,665 to 739,171 _18160 CSW01_18165: CSW01_18165 - hypothetical protein, at 739,493 to 739,975 _18165 CSW01_18170: CSW01_18170 - inosine/guanosine kinase, at 740,094 to 741,398 _18170 CSW01_18175: CSW01_18175 - LTA synthase family protein, at 741,484 to 743,457 _18175 Position (kb) 740 741 742Strain fitness (log2 ratio) -2 -1 0 1 2at 739.152 kb on + strandat 739.195 kb on + strandat 739.239 kb on + strandat 739.261 kb on + strandat 739.396 kb on - strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.402 kb on + strandat 739.410 kb on - strandat 739.412 kb on + strandat 739.420 kb on - strandat 739.514 kb on + strandat 739.514 kb on + strandat 739.522 kb on - strandat 739.547 kb on + strand, within CSW01_18165at 739.681 kb on - strand, within CSW01_18165at 739.762 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.896 kb on + strand, within CSW01_18165at 739.904 kb on - strand, within CSW01_18165at 739.904 kb on - strand, within CSW01_18165at 739.934 kb on + strandat 739.942 kb on - strandat 739.991 kb on + strandat 739.997 kb on - strandat 739.998 kb on - strandat 740.019 kb on - strandat 740.111 kb on + strandat 740.111 kb on + strandat 740.111 kb on + strandat 740.184 kb on - strandat 740.185 kb on - strandat 740.254 kb on + strand, within CSW01_18170at 740.269 kb on - strand, within CSW01_18170at 740.282 kb on - strand, within CSW01_18170at 740.303 kb on + strand, within CSW01_18170at 740.311 kb on - strand, within CSW01_18170at 740.353 kb on + strand, within CSW01_18170at 740.434 kb on + strand, within CSW01_18170at 740.480 kb on + strand, within CSW01_18170at 740.554 kb on - strand, within CSW01_18170at 740.702 kb on + strand, within CSW01_18170at 740.762 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.763 kb on + strand, within CSW01_18170at 740.923 kb on + strand, within CSW01_18170at 740.926 kb on - strand, within CSW01_18170at 740.937 kb on - strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.939 kb on + strand, within CSW01_18170at 740.963 kb on + strand, within CSW01_18170at 740.971 kb on - strand, within CSW01_18170at 741.061 kb on + strand, within CSW01_18170at 741.149 kb on + strand, within CSW01_18170at 741.157 kb on - strand, within CSW01_18170at 741.263 kb on - strand, within CSW01_18170at 741.265 kb on + strand, within CSW01_18170at 741.347 kb on + strandat 741.355 kb on - strandat 741.355 kb on - strandat 741.594 kb on + strandat 741.804 kb on - strand, within CSW01_18175at 741.917 kb on - strand, within CSW01_18175at 742.134 kb on - strand, within CSW01_18175at 742.141 kb on - strand, within CSW01_18175at 742.170 kb on - strand, within CSW01_18175at 742.175 kb on - strand, within CSW01_18175at 742.390 kb on + strand, within CSW01_18175at 742.398 kb on - strand, within CSW01_18175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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739,152 + -0.2
739,195 + +1.2
739,239 + +0.3
739,261 + -1.0
739,396 - +0.5
739,402 + -0.6
739,402 + +1.4
739,402 + +0.4
739,410 - -0.4
739,412 + +1.0
739,420 - -0.2
739,514 + +0.9
739,514 + +1.1
739,522 - +0.6
739,547 + CSW01_18165 0.11 -0.3
739,681 - CSW01_18165 0.39 +0.6
739,762 + CSW01_18165 0.56 -0.3
739,896 + CSW01_18165 0.83 +0.2
739,896 + CSW01_18165 0.83 -0.3
739,896 + CSW01_18165 0.83 +0.2
739,896 + CSW01_18165 0.83 +0.4
739,896 + CSW01_18165 0.83 +0.8
739,896 + CSW01_18165 0.83 +0.1
739,904 - CSW01_18165 0.85 +1.0
739,904 - CSW01_18165 0.85 +0.1
739,934 + -0.5
739,942 - -0.8
739,991 + +0.1
739,997 - -0.8
739,998 - +0.3
740,019 - +0.1
740,111 + +0.3
740,111 + -1.2
740,111 + -0.8
740,184 - -0.2
740,185 - +1.3
740,254 + CSW01_18170 0.12 -0.1
740,269 - CSW01_18170 0.13 +0.6
740,282 - CSW01_18170 0.14 -0.8
740,303 + CSW01_18170 0.16 -0.4
740,311 - CSW01_18170 0.17 -0.7
740,353 + CSW01_18170 0.20 -0.0
740,434 + CSW01_18170 0.26 -0.6
740,480 + CSW01_18170 0.30 -0.9
740,554 - CSW01_18170 0.35 -1.7
740,702 + CSW01_18170 0.47 -0.5
740,762 + CSW01_18170 0.51 -0.1
740,763 + CSW01_18170 0.51 -0.4
740,763 + CSW01_18170 0.51 +0.1
740,923 + CSW01_18170 0.64 +2.4
740,926 - CSW01_18170 0.64 -0.0
740,937 - CSW01_18170 0.65 -1.9
740,939 + CSW01_18170 0.65 -1.2
740,939 + CSW01_18170 0.65 +0.0
740,963 + CSW01_18170 0.67 -0.5
740,971 - CSW01_18170 0.67 +2.1
741,061 + CSW01_18170 0.74 -2.4
741,149 + CSW01_18170 0.81 +0.1
741,157 - CSW01_18170 0.81 +0.1
741,263 - CSW01_18170 0.90 +0.4
741,265 + CSW01_18170 0.90 -1.5
741,347 + -0.3
741,355 - +0.1
741,355 - -0.9
741,594 + -0.2
741,804 - CSW01_18175 0.16 +0.2
741,917 - CSW01_18175 0.22 +0.1
742,134 - CSW01_18175 0.33 -0.1
742,141 - CSW01_18175 0.33 -1.0
742,170 - CSW01_18175 0.35 +0.1
742,175 - CSW01_18175 0.35 +0.0
742,390 + CSW01_18175 0.46 -2.2
742,398 - CSW01_18175 0.46 +1.2

Or see this region's nucleotide sequence