Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18105 and CSW01_18110 overlap by 4 nucleotides CSW01_18110 and CSW01_18115 are separated by 56 nucleotides CSW01_18115 and CSW01_18120 are separated by 235 nucleotides CSW01_18120 and CSW01_18125 are separated by 173 nucleotides
CSW01_18105: CSW01_18105 - isopentenyl-diphosphate delta-isomerase, at 729,149 to 730,798
_18105
CSW01_18110: CSW01_18110 - hypothetical protein, at 730,795 to 730,899
_18110
CSW01_18115: CSW01_18115 - molecular chaperone DnaJ, at 730,956 to 731,585
_18115
CSW01_18120: CSW01_18120 - DUF2238 domain-containing protein, at 731,821 to 732,408
_18120
CSW01_18125: CSW01_18125 - integrase, at 732,582 to 733,961
_18125
Position (kb) 730
731
732 Strain fitness (log2 ratio) -1
0
1 at 731.115 kb on + strand, within CSW01_18115 at 731.141 kb on - strand, within CSW01_18115 at 731.237 kb on + strand, within CSW01_18115 at 731.250 kb on - strand, within CSW01_18115 at 731.260 kb on + strand, within CSW01_18115 at 731.324 kb on - strand, within CSW01_18115 at 731.357 kb on - strand, within CSW01_18115 at 731.357 kb on - strand, within CSW01_18115 at 731.369 kb on + strand, within CSW01_18115 at 731.386 kb on - strand, within CSW01_18115 at 731.454 kb on + strand, within CSW01_18115 at 731.745 kb on + strand at 731.796 kb on - strand at 731.826 kb on - strand at 731.983 kb on - strand, within CSW01_18120 at 732.006 kb on - strand, within CSW01_18120 at 732.103 kb on + strand, within CSW01_18120 at 732.107 kb on - strand, within CSW01_18120 at 732.196 kb on + strand, within CSW01_18120 at 732.196 kb on + strand, within CSW01_18120 at 732.204 kb on - strand, within CSW01_18120 at 732.258 kb on + strand, within CSW01_18120 at 732.345 kb on - strand, within CSW01_18120 at 732.403 kb on + strand at 732.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 731,115 + CSW01_18115 0.25 -0.3 731,141 - CSW01_18115 0.29 +0.0 731,237 + CSW01_18115 0.45 -0.1 731,250 - CSW01_18115 0.47 +0.2 731,260 + CSW01_18115 0.48 -0.3 731,324 - CSW01_18115 0.58 -0.3 731,357 - CSW01_18115 0.64 -0.7 731,357 - CSW01_18115 0.64 -0.6 731,369 + CSW01_18115 0.66 -0.4 731,386 - CSW01_18115 0.68 -0.8 731,454 + CSW01_18115 0.79 -0.9 731,745 + +0.2 731,796 - -0.6 731,826 - +0.5 731,983 - CSW01_18120 0.28 +1.2 732,006 - CSW01_18120 0.31 +1.1 732,103 + CSW01_18120 0.48 -0.8 732,107 - CSW01_18120 0.49 +0.1 732,196 + CSW01_18120 0.64 +1.0 732,196 + CSW01_18120 0.64 -0.1 732,204 - CSW01_18120 0.65 +0.2 732,258 + CSW01_18120 0.74 +0.6 732,345 - CSW01_18120 0.89 +0.0 732,403 + +0.6 732,420 + +0.1
Or see this region's nucleotide sequence