Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17685 and CSW01_17690 are separated by 671 nucleotides CSW01_17690 and CSW01_17695 are separated by 78 nucleotides CSW01_17695 and CSW01_17700 overlap by 4 nucleotides
CSW01_17685: CSW01_17685 - chitinase, at 637,011 to 640,166
_17685
CSW01_17690: CSW01_17690 - NADH-dependent alcohol dehydrogenase, at 640,838 to 641,986
_17690
CSW01_17695: CSW01_17695 - lysoplasmalogenase, at 642,065 to 642,754
_17695
CSW01_17700: CSW01_17700 - sigma-54-dependent Fis family transcriptional regulator, at 642,751 to 644,070
_17700
Position (kb) 640
641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 639.843 kb on - strand, within CSW01_17685 at 639.858 kb on - strand at 639.873 kb on - strand at 639.876 kb on + strand at 639.994 kb on + strand at 640.000 kb on + strand at 640.005 kb on + strand at 640.005 kb on + strand at 640.032 kb on - strand at 640.032 kb on - strand at 640.122 kb on - strand at 640.555 kb on + strand at 640.759 kb on - strand at 640.937 kb on - strand at 640.947 kb on - strand at 640.998 kb on + strand, within CSW01_17690 at 641.056 kb on + strand, within CSW01_17690 at 641.059 kb on - strand, within CSW01_17690 at 641.063 kb on + strand, within CSW01_17690 at 641.064 kb on - strand, within CSW01_17690 at 641.123 kb on + strand, within CSW01_17690 at 641.141 kb on - strand, within CSW01_17690 at 641.192 kb on + strand, within CSW01_17690 at 641.360 kb on - strand, within CSW01_17690 at 641.368 kb on + strand, within CSW01_17690 at 641.431 kb on + strand, within CSW01_17690 at 641.431 kb on + strand, within CSW01_17690 at 641.431 kb on + strand, within CSW01_17690 at 641.433 kb on + strand, within CSW01_17690 at 641.439 kb on - strand, within CSW01_17690 at 641.439 kb on - strand, within CSW01_17690 at 641.439 kb on - strand, within CSW01_17690 at 641.439 kb on - strand, within CSW01_17690 at 641.439 kb on - strand, within CSW01_17690 at 641.483 kb on - strand, within CSW01_17690 at 641.495 kb on + strand, within CSW01_17690 at 641.495 kb on + strand, within CSW01_17690 at 641.495 kb on + strand, within CSW01_17690 at 641.603 kb on + strand, within CSW01_17690 at 641.608 kb on + strand, within CSW01_17690 at 641.608 kb on + strand, within CSW01_17690 at 641.611 kb on - strand, within CSW01_17690 at 641.616 kb on - strand, within CSW01_17690 at 641.638 kb on + strand, within CSW01_17690 at 641.645 kb on + strand, within CSW01_17690 at 641.689 kb on + strand, within CSW01_17690 at 641.692 kb on - strand, within CSW01_17690 at 641.730 kb on + strand, within CSW01_17690 at 641.893 kb on - strand at 641.990 kb on - strand at 642.261 kb on + strand, within CSW01_17695 at 642.269 kb on - strand, within CSW01_17695 at 642.305 kb on + strand, within CSW01_17695 at 642.408 kb on + strand, within CSW01_17695 at 642.427 kb on - strand, within CSW01_17695 at 642.429 kb on + strand, within CSW01_17695 at 642.500 kb on - strand, within CSW01_17695 at 642.500 kb on - strand, within CSW01_17695 at 642.564 kb on + strand, within CSW01_17695 at 642.571 kb on + strand, within CSW01_17695 at 642.571 kb on + strand, within CSW01_17695 at 642.579 kb on - strand, within CSW01_17695 at 642.584 kb on - strand, within CSW01_17695 at 642.597 kb on - strand, within CSW01_17695 at 642.613 kb on + strand, within CSW01_17695 at 642.635 kb on - strand, within CSW01_17695 at 642.719 kb on + strand at 642.728 kb on + strand at 642.833 kb on - strand at 642.833 kb on - strand at 642.919 kb on - strand, within CSW01_17700
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 639,843 - CSW01_17685 0.90 -0.2 639,858 - -0.9 639,873 - -0.1 639,876 + -0.9 639,994 + -0.2 640,000 + +0.2 640,005 + +1.6 640,005 + -1.2 640,032 - +0.0 640,032 - +1.0 640,122 - -0.2 640,555 + +0.4 640,759 - +0.0 640,937 - +1.0 640,947 - +0.6 640,998 + CSW01_17690 0.14 +0.7 641,056 + CSW01_17690 0.19 +0.6 641,059 - CSW01_17690 0.19 -1.3 641,063 + CSW01_17690 0.20 +1.4 641,064 - CSW01_17690 0.20 +0.1 641,123 + CSW01_17690 0.25 -0.2 641,141 - CSW01_17690 0.26 -0.5 641,192 + CSW01_17690 0.31 +0.0 641,360 - CSW01_17690 0.45 +0.5 641,368 + CSW01_17690 0.46 -0.8 641,431 + CSW01_17690 0.52 -0.9 641,431 + CSW01_17690 0.52 +2.5 641,431 + CSW01_17690 0.52 -0.3 641,433 + CSW01_17690 0.52 +0.8 641,439 - CSW01_17690 0.52 -0.3 641,439 - CSW01_17690 0.52 -0.7 641,439 - CSW01_17690 0.52 -0.2 641,439 - CSW01_17690 0.52 +0.0 641,439 - CSW01_17690 0.52 +1.0 641,483 - CSW01_17690 0.56 +0.6 641,495 + CSW01_17690 0.57 -1.0 641,495 + CSW01_17690 0.57 +0.2 641,495 + CSW01_17690 0.57 -0.4 641,603 + CSW01_17690 0.67 -1.1 641,608 + CSW01_17690 0.67 -0.4 641,608 + CSW01_17690 0.67 +1.0 641,611 - CSW01_17690 0.67 -0.2 641,616 - CSW01_17690 0.68 -0.8 641,638 + CSW01_17690 0.70 -0.4 641,645 + CSW01_17690 0.70 +0.0 641,689 + CSW01_17690 0.74 +0.3 641,692 - CSW01_17690 0.74 -1.3 641,730 + CSW01_17690 0.78 -1.3 641,893 - -0.1 641,990 - -0.0 642,261 + CSW01_17695 0.28 +0.1 642,269 - CSW01_17695 0.30 -0.2 642,305 + CSW01_17695 0.35 +0.8 642,408 + CSW01_17695 0.50 +0.1 642,427 - CSW01_17695 0.52 +0.5 642,429 + CSW01_17695 0.53 -0.0 642,500 - CSW01_17695 0.63 -0.1 642,500 - CSW01_17695 0.63 +0.4 642,564 + CSW01_17695 0.72 -0.3 642,571 + CSW01_17695 0.73 -0.1 642,571 + CSW01_17695 0.73 +0.5 642,579 - CSW01_17695 0.74 +3.6 642,584 - CSW01_17695 0.75 +0.2 642,597 - CSW01_17695 0.77 -0.4 642,613 + CSW01_17695 0.79 +0.5 642,635 - CSW01_17695 0.83 -0.1 642,719 + -2.8 642,728 + +0.1 642,833 - +0.3 642,833 - +0.8 642,919 - CSW01_17700 0.13 -0.2
Or see this region's nucleotide sequence