Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17485 and CSW01_17490 are separated by 121 nucleotides CSW01_17490 and CSW01_17495 are separated by 346 nucleotides
CSW01_17485: CSW01_17485 - sucrose-6-phosphate hydrolase, at 588,040 to 589,686
_17485
CSW01_17490: CSW01_17490 - aminoimidazole riboside kinase, at 589,808 to 590,779
_17490
CSW01_17495: CSW01_17495 - glycerol-3-phosphate dehydrogenase, at 591,126 to 592,664
_17495
Position (kb) 589
590
591 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 588.810 kb on + strand, within CSW01_17485 at 588.846 kb on + strand, within CSW01_17485 at 588.854 kb on - strand, within CSW01_17485 at 588.870 kb on - strand, within CSW01_17485 at 588.890 kb on + strand, within CSW01_17485 at 588.898 kb on - strand, within CSW01_17485 at 588.898 kb on - strand, within CSW01_17485 at 588.898 kb on - strand, within CSW01_17485 at 588.943 kb on - strand, within CSW01_17485 at 588.964 kb on + strand, within CSW01_17485 at 588.993 kb on + strand, within CSW01_17485 at 589.129 kb on - strand, within CSW01_17485 at 589.149 kb on + strand, within CSW01_17485 at 589.335 kb on + strand, within CSW01_17485 at 589.335 kb on + strand, within CSW01_17485 at 589.343 kb on + strand, within CSW01_17485 at 589.487 kb on + strand, within CSW01_17485 at 589.568 kb on + strand at 589.624 kb on + strand at 589.629 kb on + strand at 589.629 kb on + strand at 589.661 kb on + strand at 589.680 kb on + strand at 589.680 kb on + strand at 589.790 kb on - strand at 589.838 kb on + strand at 589.889 kb on + strand at 590.016 kb on + strand, within CSW01_17490 at 590.109 kb on + strand, within CSW01_17490 at 590.233 kb on + strand, within CSW01_17490 at 590.241 kb on - strand, within CSW01_17490 at 590.265 kb on - strand, within CSW01_17490 at 590.288 kb on - strand, within CSW01_17490 at 590.397 kb on - strand, within CSW01_17490 at 590.452 kb on + strand, within CSW01_17490 at 590.452 kb on + strand, within CSW01_17490 at 590.460 kb on - strand, within CSW01_17490 at 590.461 kb on + strand, within CSW01_17490 at 590.497 kb on - strand, within CSW01_17490 at 590.508 kb on - strand, within CSW01_17490 at 590.807 kb on + strand at 590.940 kb on - strand at 591.139 kb on + strand at 591.297 kb on - strand, within CSW01_17495 at 591.297 kb on - strand, within CSW01_17495 at 591.299 kb on + strand, within CSW01_17495 at 591.309 kb on + strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.327 kb on - strand, within CSW01_17495 at 591.397 kb on + strand, within CSW01_17495 at 591.405 kb on - strand, within CSW01_17495 at 591.659 kb on - strand, within CSW01_17495 at 591.667 kb on - strand, within CSW01_17495
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 588,810 + CSW01_17485 0.47 -0.0 588,846 + CSW01_17485 0.49 +0.0 588,854 - CSW01_17485 0.49 -1.3 588,870 - CSW01_17485 0.50 +0.2 588,890 + CSW01_17485 0.52 +0.2 588,898 - CSW01_17485 0.52 +0.1 588,898 - CSW01_17485 0.52 -0.4 588,898 - CSW01_17485 0.52 -0.5 588,943 - CSW01_17485 0.55 +0.0 588,964 + CSW01_17485 0.56 -0.2 588,993 + CSW01_17485 0.58 +0.0 589,129 - CSW01_17485 0.66 +0.9 589,149 + CSW01_17485 0.67 +0.5 589,335 + CSW01_17485 0.79 -0.2 589,335 + CSW01_17485 0.79 +0.0 589,343 + CSW01_17485 0.79 +3.5 589,487 + CSW01_17485 0.88 +1.0 589,568 + -0.1 589,624 + -0.2 589,629 + -0.5 589,629 + +0.1 589,661 + +0.5 589,680 + -0.0 589,680 + -0.3 589,790 - +0.3 589,838 + +0.2 589,889 + +1.2 590,016 + CSW01_17490 0.21 -0.8 590,109 + CSW01_17490 0.31 +0.9 590,233 + CSW01_17490 0.44 +0.0 590,241 - CSW01_17490 0.45 -0.4 590,265 - CSW01_17490 0.47 -0.1 590,288 - CSW01_17490 0.49 +0.4 590,397 - CSW01_17490 0.61 -0.3 590,452 + CSW01_17490 0.66 +0.4 590,452 + CSW01_17490 0.66 -0.3 590,460 - CSW01_17490 0.67 -0.4 590,461 + CSW01_17490 0.67 -0.0 590,497 - CSW01_17490 0.71 +0.0 590,508 - CSW01_17490 0.72 -0.3 590,807 + +0.2 590,940 - -0.2 591,139 + +0.7 591,297 - CSW01_17495 0.11 -1.9 591,297 - CSW01_17495 0.11 -1.8 591,299 + CSW01_17495 0.11 +2.2 591,309 + CSW01_17495 0.12 +0.1 591,327 - CSW01_17495 0.13 -0.1 591,327 - CSW01_17495 0.13 +0.0 591,327 - CSW01_17495 0.13 -0.9 591,397 + CSW01_17495 0.18 +0.2 591,405 - CSW01_17495 0.18 -0.2 591,659 - CSW01_17495 0.35 +0.3 591,667 - CSW01_17495 0.35 +1.0
Or see this region's nucleotide sequence