Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16940 and CSW01_16945 are separated by 161 nucleotides CSW01_16945 and CSW01_16950 are separated by 231 nucleotides
CSW01_16940: CSW01_16940 - LysR family transcriptional regulator, at 476,454 to 477,359
_16940
CSW01_16945: CSW01_16945 - DUF1097 domain-containing protein, at 477,521 to 478,033
_16945
CSW01_16950: CSW01_16950 - ATP-dependent endonuclease, at 478,265 to 479,929
_16950
Position (kb) 477
478
479 Strain fitness (log2 ratio) -1
0
1 at 476.534 kb on + strand at 476.571 kb on - strand, within CSW01_16940 at 476.680 kb on + strand, within CSW01_16940 at 476.688 kb on - strand, within CSW01_16940 at 476.725 kb on - strand, within CSW01_16940 at 476.725 kb on - strand, within CSW01_16940 at 476.788 kb on + strand, within CSW01_16940 at 476.788 kb on + strand, within CSW01_16940 at 476.796 kb on - strand, within CSW01_16940 at 476.860 kb on - strand, within CSW01_16940 at 476.923 kb on + strand, within CSW01_16940 at 476.938 kb on - strand, within CSW01_16940 at 477.001 kb on + strand, within CSW01_16940 at 477.001 kb on + strand, within CSW01_16940 at 477.009 kb on - strand, within CSW01_16940 at 477.028 kb on - strand, within CSW01_16940 at 477.140 kb on - strand, within CSW01_16940 at 477.239 kb on + strand, within CSW01_16940 at 477.258 kb on - strand, within CSW01_16940 at 477.533 kb on + strand at 477.541 kb on - strand at 477.547 kb on + strand at 477.606 kb on + strand, within CSW01_16945 at 477.616 kb on + strand, within CSW01_16945 at 477.651 kb on + strand, within CSW01_16945 at 477.669 kb on - strand, within CSW01_16945 at 477.686 kb on + strand, within CSW01_16945 at 477.686 kb on + strand, within CSW01_16945 at 477.686 kb on + strand, within CSW01_16945 at 477.694 kb on - strand, within CSW01_16945 at 477.951 kb on - strand, within CSW01_16945 at 477.985 kb on + strand at 477.995 kb on + strand at 478.034 kb on + strand at 478.042 kb on - strand at 478.081 kb on - strand at 478.287 kb on + strand at 478.318 kb on - strand at 478.321 kb on + strand at 478.323 kb on + strand at 478.329 kb on - strand at 478.331 kb on - strand at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.471 kb on + strand, within CSW01_16950 at 478.479 kb on - strand, within CSW01_16950 at 478.479 kb on - strand, within CSW01_16950 at 478.479 kb on - strand, within CSW01_16950 at 478.663 kb on - strand, within CSW01_16950 at 478.802 kb on + strand, within CSW01_16950 at 478.843 kb on + strand, within CSW01_16950 at 478.973 kb on + strand, within CSW01_16950
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 476,534 + -0.0 476,571 - CSW01_16940 0.13 -1.6 476,680 + CSW01_16940 0.25 -1.0 476,688 - CSW01_16940 0.26 -0.6 476,725 - CSW01_16940 0.30 +1.1 476,725 - CSW01_16940 0.30 -0.6 476,788 + CSW01_16940 0.37 -0.4 476,788 + CSW01_16940 0.37 +0.6 476,796 - CSW01_16940 0.38 +0.6 476,860 - CSW01_16940 0.45 -1.0 476,923 + CSW01_16940 0.52 +0.0 476,938 - CSW01_16940 0.53 +0.1 477,001 + CSW01_16940 0.60 +0.0 477,001 + CSW01_16940 0.60 +1.0 477,009 - CSW01_16940 0.61 +0.7 477,028 - CSW01_16940 0.63 -0.6 477,140 - CSW01_16940 0.76 +1.4 477,239 + CSW01_16940 0.87 -0.1 477,258 - CSW01_16940 0.89 +1.1 477,533 + +1.0 477,541 - +1.1 477,547 + -0.1 477,606 + CSW01_16945 0.17 +1.3 477,616 + CSW01_16945 0.19 -0.9 477,651 + CSW01_16945 0.25 -0.3 477,669 - CSW01_16945 0.29 -0.4 477,686 + CSW01_16945 0.32 +1.6 477,686 + CSW01_16945 0.32 -0.3 477,686 + CSW01_16945 0.32 -0.7 477,694 - CSW01_16945 0.34 -0.2 477,951 - CSW01_16945 0.84 +0.2 477,985 + -1.3 477,995 + +0.4 478,034 + +0.4 478,042 - +0.0 478,081 - -1.2 478,287 + -0.6 478,318 - -0.4 478,321 + +0.0 478,323 + +0.3 478,329 - +1.2 478,331 - +0.3 478,471 + CSW01_16950 0.12 +0.5 478,471 + CSW01_16950 0.12 +0.2 478,471 + CSW01_16950 0.12 +0.8 478,471 + CSW01_16950 0.12 -1.2 478,471 + CSW01_16950 0.12 -0.5 478,471 + CSW01_16950 0.12 +0.2 478,471 + CSW01_16950 0.12 +0.3 478,479 - CSW01_16950 0.13 -0.1 478,479 - CSW01_16950 0.13 +0.4 478,479 - CSW01_16950 0.13 +0.7 478,663 - CSW01_16950 0.24 +0.3 478,802 + CSW01_16950 0.32 -0.1 478,843 + CSW01_16950 0.35 -0.2 478,973 + CSW01_16950 0.43 +0.1
Or see this region's nucleotide sequence