Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14950

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14945 and CSW01_14950 are separated by 182 nucleotidesCSW01_14950 and CSW01_14955 are separated by 1 nucleotidesCSW01_14955 and CSW01_14960 are separated by 65 nucleotides CSW01_14945: CSW01_14945 - 2-hydroxyacid dehydrogenase, at 208,565 to 209,560 _14945 CSW01_14950: CSW01_14950 - sodium:proton antiporter, at 209,743 to 211,086 _14950 CSW01_14955: CSW01_14955 - potassium channel protein, at 211,088 to 211,930 _14955 CSW01_14960: CSW01_14960 - hypothetical protein, at 211,996 to 212,544 _14960 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.821 kb on + strand, within CSW01_14945at 208.954 kb on - strand, within CSW01_14945at 208.959 kb on + strand, within CSW01_14945at 208.964 kb on + strand, within CSW01_14945at 208.967 kb on - strand, within CSW01_14945at 208.978 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 209.006 kb on - strand, within CSW01_14945at 209.035 kb on + strand, within CSW01_14945at 209.043 kb on - strand, within CSW01_14945at 209.048 kb on + strand, within CSW01_14945at 209.142 kb on - strand, within CSW01_14945at 209.150 kb on + strand, within CSW01_14945at 209.323 kb on + strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.341 kb on - strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.379 kb on + strand, within CSW01_14945at 209.417 kb on - strand, within CSW01_14945at 209.493 kb on - strandat 209.581 kb on - strandat 209.595 kb on - strandat 209.637 kb on + strandat 209.645 kb on - strandat 209.690 kb on + strandat 209.697 kb on + strandat 209.697 kb on + strandat 209.697 kb on + strandat 209.705 kb on - strandat 209.783 kb on + strandat 209.783 kb on + strandat 209.791 kb on - strandat 209.791 kb on - strandat 209.862 kb on - strandat 209.931 kb on - strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.974 kb on + strand, within CSW01_14950at 209.977 kb on + strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 210.027 kb on - strand, within CSW01_14950at 210.148 kb on + strand, within CSW01_14950at 210.242 kb on + strand, within CSW01_14950at 210.322 kb on - strand, within CSW01_14950at 210.331 kb on - strand, within CSW01_14950at 210.394 kb on + strand, within CSW01_14950at 210.410 kb on + strand, within CSW01_14950at 210.441 kb on + strand, within CSW01_14950at 210.449 kb on + strand, within CSW01_14950at 210.505 kb on - strand, within CSW01_14950at 210.564 kb on + strand, within CSW01_14950at 210.564 kb on + strand, within CSW01_14950at 210.572 kb on - strand, within CSW01_14950at 210.656 kb on + strand, within CSW01_14950at 210.743 kb on + strand, within CSW01_14950at 210.800 kb on + strand, within CSW01_14950at 210.811 kb on + strand, within CSW01_14950at 210.876 kb on - strand, within CSW01_14950at 210.926 kb on - strand, within CSW01_14950at 210.937 kb on + strand, within CSW01_14950at 210.942 kb on + strand, within CSW01_14950at 210.942 kb on + strand, within CSW01_14950at 210.945 kb on - strand, within CSW01_14950at 210.950 kb on - strand, within CSW01_14950at 210.952 kb on + strandat 210.958 kb on + strandat 210.966 kb on - strandat 211.005 kb on + strandat 211.094 kb on - strandat 211.158 kb on + strandat 211.198 kb on - strand, within CSW01_14955at 211.213 kb on - strand, within CSW01_14955at 211.396 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.405 kb on - strand, within CSW01_14955at 211.431 kb on - strand, within CSW01_14955at 211.468 kb on - strand, within CSW01_14955at 211.489 kb on + strand, within CSW01_14955at 211.527 kb on + strand, within CSW01_14955at 211.532 kb on + strand, within CSW01_14955at 211.540 kb on - strand, within CSW01_14955at 211.611 kb on + strand, within CSW01_14955at 211.619 kb on - strand, within CSW01_14955at 211.669 kb on - strand, within CSW01_14955at 211.711 kb on - strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.722 kb on - strand, within CSW01_14955at 211.752 kb on - strand, within CSW01_14955at 211.765 kb on + strand, within CSW01_14955at 211.770 kb on + strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.918 kb on + strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.960 kb on + strandat 211.960 kb on + strandat 211.991 kb on - strandat 212.068 kb on - strand, within CSW01_14960

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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208,791 - CSW01_14945 0.23 +1.0
208,791 - CSW01_14945 0.23 +0.6
208,791 - CSW01_14945 0.23 +0.3
208,821 + CSW01_14945 0.26 +0.4
208,954 - CSW01_14945 0.39 +0.4
208,959 + CSW01_14945 0.40 -0.7
208,964 + CSW01_14945 0.40 -1.5
208,967 - CSW01_14945 0.40 -0.3
208,978 + CSW01_14945 0.41 -0.0
208,987 + CSW01_14945 0.42 +1.0
208,987 + CSW01_14945 0.42 +0.2
208,987 + CSW01_14945 0.42 -0.2
208,987 + CSW01_14945 0.42 -2.0
208,987 + CSW01_14945 0.42 -0.9
208,987 + CSW01_14945 0.42 -0.6
208,995 - CSW01_14945 0.43 -0.1
208,995 - CSW01_14945 0.43 +0.7
208,995 - CSW01_14945 0.43 -1.0
208,995 - CSW01_14945 0.43 +0.1
208,995 - CSW01_14945 0.43 -0.9
208,995 - CSW01_14945 0.43 +0.6
208,995 - CSW01_14945 0.43 -1.5
208,995 - CSW01_14945 0.43 -0.7
208,995 - CSW01_14945 0.43 +0.4
209,006 - CSW01_14945 0.44 -0.2
209,035 + CSW01_14945 0.47 +0.1
209,043 - CSW01_14945 0.48 +0.7
209,048 + CSW01_14945 0.48 -0.9
209,142 - CSW01_14945 0.58 -0.2
209,150 + CSW01_14945 0.59 -0.6
209,323 + CSW01_14945 0.76 -0.4
209,336 - CSW01_14945 0.77 -0.2
209,336 - CSW01_14945 0.77 -0.4
209,341 - CSW01_14945 0.78 +0.9
209,361 + CSW01_14945 0.80 +2.3
209,361 + CSW01_14945 0.80 -0.2
209,369 - CSW01_14945 0.81 -0.5
209,369 - CSW01_14945 0.81 +0.4
209,379 + CSW01_14945 0.82 -0.3
209,417 - CSW01_14945 0.86 -0.9
209,493 - -0.2
209,581 - +0.0
209,595 - +0.8
209,637 + -0.2
209,645 - -0.0
209,690 + -0.0
209,697 + +1.7
209,697 + +0.2
209,697 + -0.2
209,705 - -0.0
209,783 + +0.2
209,783 + -0.1
209,791 - +0.5
209,791 - +0.3
209,862 - +0.1
209,931 - CSW01_14950 0.14 +0.3
209,972 + CSW01_14950 0.17 -0.4
209,972 + CSW01_14950 0.17 +1.0
209,972 + CSW01_14950 0.17 -1.7
209,972 + CSW01_14950 0.17 +1.2
209,974 + CSW01_14950 0.17 -0.6
209,977 + CSW01_14950 0.17 +0.1
209,980 - CSW01_14950 0.18 +0.1
209,980 - CSW01_14950 0.18 -1.7
209,980 - CSW01_14950 0.18 +1.0
209,980 - CSW01_14950 0.18 +0.2
209,980 - CSW01_14950 0.18 +1.7
209,980 - CSW01_14950 0.18 +0.8
209,980 - CSW01_14950 0.18 -0.3
209,980 - CSW01_14950 0.18 +0.0
209,980 - CSW01_14950 0.18 +0.8
210,027 - CSW01_14950 0.21 +1.4
210,148 + CSW01_14950 0.30 -1.5
210,242 + CSW01_14950 0.37 +1.6
210,322 - CSW01_14950 0.43 +0.0
210,331 - CSW01_14950 0.44 +0.1
210,394 + CSW01_14950 0.48 -2.5
210,410 + CSW01_14950 0.50 +0.7
210,441 + CSW01_14950 0.52 +0.4
210,449 + CSW01_14950 0.53 +1.2
210,505 - CSW01_14950 0.57 +0.1
210,564 + CSW01_14950 0.61 -1.2
210,564 + CSW01_14950 0.61 -0.2
210,572 - CSW01_14950 0.62 +0.3
210,656 + CSW01_14950 0.68 +1.8
210,743 + CSW01_14950 0.74 -1.9
210,800 + CSW01_14950 0.79 -1.1
210,811 + CSW01_14950 0.79 +2.9
210,876 - CSW01_14950 0.84 +0.2
210,926 - CSW01_14950 0.88 -0.6
210,937 + CSW01_14950 0.89 +0.1
210,942 + CSW01_14950 0.89 +0.4
210,942 + CSW01_14950 0.89 -0.1
210,945 - CSW01_14950 0.89 -0.5
210,950 - CSW01_14950 0.90 +1.1
210,952 + +1.7
210,958 + +0.4
210,966 - -0.6
211,005 + +0.3
211,094 - +0.3
211,158 + +0.1
211,198 - CSW01_14955 0.13 +0.1
211,213 - CSW01_14955 0.15 -0.3
211,396 + CSW01_14955 0.37 +1.5
211,397 + CSW01_14955 0.37 -0.3
211,397 + CSW01_14955 0.37 +0.1
211,405 - CSW01_14955 0.38 +0.1
211,431 - CSW01_14955 0.41 -0.6
211,468 - CSW01_14955 0.45 -0.4
211,489 + CSW01_14955 0.48 +0.1
211,527 + CSW01_14955 0.52 +0.9
211,532 + CSW01_14955 0.53 -0.2
211,540 - CSW01_14955 0.54 -0.6
211,611 + CSW01_14955 0.62 -0.9
211,619 - CSW01_14955 0.63 -0.9
211,669 - CSW01_14955 0.69 -0.2
211,711 - CSW01_14955 0.74 +1.1
211,714 + CSW01_14955 0.74 +0.6
211,714 + CSW01_14955 0.74 -0.1
211,714 + CSW01_14955 0.74 -0.4
211,714 + CSW01_14955 0.74 -0.4
211,721 - CSW01_14955 0.75 -0.9
211,721 - CSW01_14955 0.75 +0.1
211,721 - CSW01_14955 0.75 +0.3
211,722 - CSW01_14955 0.75 +0.1
211,752 - CSW01_14955 0.79 -0.4
211,765 + CSW01_14955 0.80 -0.2
211,770 + CSW01_14955 0.81 -0.4
211,778 - CSW01_14955 0.82 +0.1
211,778 - CSW01_14955 0.82 -1.1
211,918 + +2.1
211,926 - -0.8
211,926 - -0.7
211,926 - +0.2
211,960 + +2.3
211,960 + +0.5
211,991 - +0.7
212,068 - CSW01_14960 0.13 -0.6

Or see this region's nucleotide sequence