Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14300

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14295 and CSW01_14300 are separated by 64 nucleotidesCSW01_14300 and CSW01_14305 are separated by 85 nucleotidesCSW01_14305 and CSW01_14310 are separated by 41 nucleotides CSW01_14295: CSW01_14295 - lactate dehydrogenase, at 59,785 to 61,254 _14295 CSW01_14300: CSW01_14300 - purine-nucleoside phosphorylase, at 61,319 to 62,029 _14300 CSW01_14305: CSW01_14305 - hypothetical protein, at 62,115 to 62,294 _14305 CSW01_14310: CSW01_14310 - DUF1722 domain-containing protein, at 62,336 to 63,304 _14310 Position (kb) 61 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 60.325 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.333 kb on - strand, within CSW01_14295at 60.372 kb on - strand, within CSW01_14295at 60.454 kb on + strand, within CSW01_14295at 60.462 kb on + strand, within CSW01_14295at 60.462 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.548 kb on + strand, within CSW01_14295at 60.582 kb on - strand, within CSW01_14295at 60.652 kb on + strand, within CSW01_14295at 60.652 kb on - strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.696 kb on + strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.704 kb on - strand, within CSW01_14295at 60.821 kb on + strand, within CSW01_14295at 60.832 kb on - strand, within CSW01_14295at 60.955 kb on + strand, within CSW01_14295at 61.023 kb on + strand, within CSW01_14295at 61.031 kb on - strand, within CSW01_14295at 61.031 kb on - strand, within CSW01_14295at 61.049 kb on - strand, within CSW01_14295at 61.159 kb on - strandat 61.207 kb on + strandat 61.268 kb on + strandat 61.270 kb on + strandat 61.270 kb on + strandat 61.280 kb on + strandat 61.401 kb on - strand, within CSW01_14300at 61.464 kb on + strand, within CSW01_14300at 61.493 kb on - strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on + strand, within CSW01_14300at 61.545 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.553 kb on - strand, within CSW01_14300at 61.684 kb on + strand, within CSW01_14300at 61.712 kb on - strand, within CSW01_14300at 61.717 kb on - strand, within CSW01_14300at 61.775 kb on + strand, within CSW01_14300at 61.810 kb on + strand, within CSW01_14300at 61.835 kb on - strand, within CSW01_14300at 61.914 kb on + strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.922 kb on - strand, within CSW01_14300at 61.924 kb on + strand, within CSW01_14300at 61.942 kb on - strand, within CSW01_14300at 61.981 kb on - strandat 62.015 kb on - strandat 62.088 kb on + strandat 62.103 kb on + strandat 62.106 kb on + strandat 62.336 kb on + strandat 62.346 kb on + strandat 62.382 kb on + strandat 62.446 kb on + strand, within CSW01_14310at 62.531 kb on - strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.605 kb on + strand, within CSW01_14310at 62.605 kb on - strand, within CSW01_14310at 62.615 kb on - strand, within CSW01_14310at 62.625 kb on - strand, within CSW01_14310at 62.648 kb on - strand, within CSW01_14310at 62.675 kb on - strand, within CSW01_14310at 62.925 kb on + strand, within CSW01_14310at 62.933 kb on - strand, within CSW01_14310at 62.951 kb on + strand, within CSW01_14310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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60,325 + CSW01_14295 0.37 -0.3
60,326 + CSW01_14295 0.37 +0.1
60,326 + CSW01_14295 0.37 +0.2
60,333 - CSW01_14295 0.37 +0.9
60,372 - CSW01_14295 0.40 +0.4
60,454 + CSW01_14295 0.46 +0.3
60,462 + CSW01_14295 0.46 -1.0
60,462 - CSW01_14295 0.46 +0.9
60,478 - CSW01_14295 0.47 +0.4
60,478 - CSW01_14295 0.47 -0.1
60,548 + CSW01_14295 0.52 -0.4
60,582 - CSW01_14295 0.54 -0.0
60,652 + CSW01_14295 0.59 +1.1
60,652 - CSW01_14295 0.59 +0.8
60,696 + CSW01_14295 0.62 +0.1
60,696 + CSW01_14295 0.62 +0.1
60,696 + CSW01_14295 0.62 -0.3
60,704 - CSW01_14295 0.63 +0.9
60,704 - CSW01_14295 0.63 +1.2
60,704 - CSW01_14295 0.63 +0.2
60,704 - CSW01_14295 0.63 +0.2
60,704 - CSW01_14295 0.63 +0.7
60,821 + CSW01_14295 0.70 +0.3
60,832 - CSW01_14295 0.71 +0.4
60,955 + CSW01_14295 0.80 -0.6
61,023 + CSW01_14295 0.84 -0.9
61,031 - CSW01_14295 0.85 +0.4
61,031 - CSW01_14295 0.85 +0.3
61,049 - CSW01_14295 0.86 -0.1
61,159 - -0.3
61,207 + +2.4
61,268 + +0.4
61,270 + +0.8
61,270 + +0.1
61,280 + +0.2
61,401 - CSW01_14300 0.12 -1.0
61,464 + CSW01_14300 0.20 -0.8
61,493 - CSW01_14300 0.24 -0.7
61,545 + CSW01_14300 0.32 +0.1
61,545 + CSW01_14300 0.32 -0.7
61,545 + CSW01_14300 0.32 -0.1
61,545 + CSW01_14300 0.32 -0.1
61,545 + CSW01_14300 0.32 +0.6
61,545 - CSW01_14300 0.32 -0.7
61,553 - CSW01_14300 0.33 -1.2
61,553 - CSW01_14300 0.33 +0.2
61,553 - CSW01_14300 0.33 +0.4
61,553 - CSW01_14300 0.33 -2.7
61,553 - CSW01_14300 0.33 +0.1
61,684 + CSW01_14300 0.51 -0.8
61,712 - CSW01_14300 0.55 -0.7
61,717 - CSW01_14300 0.56 +0.2
61,775 + CSW01_14300 0.64 -0.0
61,810 + CSW01_14300 0.69 -1.5
61,835 - CSW01_14300 0.73 -0.0
61,914 + CSW01_14300 0.84 -0.5
61,922 - CSW01_14300 0.85 -1.6
61,922 - CSW01_14300 0.85 +1.1
61,924 + CSW01_14300 0.85 +1.1
61,942 - CSW01_14300 0.88 -1.5
61,981 - -0.2
62,015 - +1.4
62,088 + -0.2
62,103 + +0.4
62,106 + +0.3
62,336 + -0.0
62,346 + -0.7
62,382 + +0.1
62,446 + CSW01_14310 0.11 +1.5
62,531 - CSW01_14310 0.20 -1.5
62,597 + CSW01_14310 0.27 -0.2
62,597 + CSW01_14310 0.27 -0.9
62,597 + CSW01_14310 0.27 -0.2
62,597 + CSW01_14310 0.27 -0.4
62,605 + CSW01_14310 0.28 -0.2
62,605 - CSW01_14310 0.28 +0.0
62,615 - CSW01_14310 0.29 -0.2
62,625 - CSW01_14310 0.30 -0.3
62,648 - CSW01_14310 0.32 +1.1
62,675 - CSW01_14310 0.35 +0.5
62,925 + CSW01_14310 0.61 -0.1
62,933 - CSW01_14310 0.62 +0.3
62,951 + CSW01_14310 0.63 +0.9

Or see this region's nucleotide sequence