Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12080 and CSW01_12085 are separated by 12 nucleotides CSW01_12085 and CSW01_12090 are separated by 104 nucleotides CSW01_12090 and CSW01_12095 are separated by 188 nucleotides CSW01_12095 and CSW01_12100 are separated by 89 nucleotides
CSW01_12080: CSW01_12080 - recombinase RecF, at 2,582,031 to 2,583,653
_12080
CSW01_12085: CSW01_12085 - HNH endonuclease, at 2,583,666 to 2,584,283
_12085
CSW01_12090: CSW01_12090 - hypothetical protein, at 2,584,388 to 2,584,705
_12090
CSW01_12095: CSW01_12095 - hypothetical protein, at 2,584,894 to 2,585,376
_12095
CSW01_12100: CSW01_12100 - carbamoyl-phosphate synthase large chain, at 2,585,466 to 2,588,696
_12100
Position (kb)
2584
2585 Strain fitness (log2 ratio)
-1
0
1 at 2583.404 kb on + strand, within CSW01_12080 at 2583.427 kb on - strand, within CSW01_12080 at 2583.497 kb on + strand at 2583.510 kb on + strand at 2583.516 kb on + strand at 2583.518 kb on - strand at 2583.526 kb on + strand at 2583.568 kb on + strand at 2583.685 kb on + strand at 2583.691 kb on - strand at 2583.691 kb on - strand at 2583.731 kb on + strand, within CSW01_12085 at 2583.732 kb on + strand, within CSW01_12085 at 2583.759 kb on + strand, within CSW01_12085 at 2583.764 kb on + strand, within CSW01_12085 at 2583.790 kb on + strand, within CSW01_12085 at 2583.790 kb on + strand, within CSW01_12085 at 2583.791 kb on + strand, within CSW01_12085 at 2583.795 kb on + strand, within CSW01_12085 at 2583.795 kb on + strand, within CSW01_12085 at 2583.796 kb on + strand, within CSW01_12085 at 2583.797 kb on + strand, within CSW01_12085 at 2583.798 kb on + strand, within CSW01_12085 at 2583.805 kb on + strand, within CSW01_12085 at 2583.805 kb on - strand, within CSW01_12085 at 2583.805 kb on - strand, within CSW01_12085 at 2583.807 kb on + strand, within CSW01_12085 at 2583.813 kb on + strand, within CSW01_12085 at 2583.815 kb on - strand, within CSW01_12085 at 2583.821 kb on - strand, within CSW01_12085 at 2583.821 kb on - strand, within CSW01_12085 at 2583.821 kb on - strand, within CSW01_12085 at 2583.936 kb on + strand, within CSW01_12085 at 2584.015 kb on + strand, within CSW01_12085 at 2584.031 kb on - strand, within CSW01_12085 at 2584.033 kb on - strand, within CSW01_12085 at 2584.104 kb on + strand, within CSW01_12085 at 2584.104 kb on + strand, within CSW01_12085 at 2584.297 kb on + strand at 2584.305 kb on - strand at 2584.329 kb on - strand at 2584.360 kb on + strand at 2584.390 kb on + strand at 2584.395 kb on - strand at 2584.396 kb on + strand at 2584.396 kb on + strand at 2584.396 kb on + strand at 2584.396 kb on + strand at 2584.402 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.407 kb on + strand at 2584.408 kb on + strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.415 kb on - strand at 2584.417 kb on + strand at 2584.431 kb on + strand, within CSW01_12090 at 2584.516 kb on + strand, within CSW01_12090 at 2584.555 kb on + strand, within CSW01_12090 at 2584.560 kb on - strand, within CSW01_12090 at 2584.602 kb on - strand, within CSW01_12090 at 2584.612 kb on - strand, within CSW01_12090 at 2584.612 kb on - strand, within CSW01_12090 at 2584.673 kb on + strand, within CSW01_12090 at 2584.673 kb on + strand, within CSW01_12090 at 2584.714 kb on + strand at 2584.737 kb on + strand at 2584.737 kb on + strand at 2584.743 kb on + strand at 2584.743 kb on + strand at 2584.745 kb on - strand at 2584.751 kb on - strand at 2584.751 kb on - strand at 2584.751 kb on - strand at 2584.751 kb on - strand at 2584.751 kb on - strand at 2584.763 kb on - strand at 2584.925 kb on + strand at 2584.925 kb on + strand at 2584.925 kb on + strand at 2584.933 kb on - strand at 2584.933 kb on - strand at 2584.933 kb on - strand at 2585.002 kb on - strand, within CSW01_12095 at 2585.002 kb on - strand, within CSW01_12095 at 2585.002 kb on - strand, within CSW01_12095 at 2585.017 kb on - strand, within CSW01_12095 at 2585.041 kb on - strand, within CSW01_12095 at 2585.117 kb on + strand, within CSW01_12095 at 2585.125 kb on - strand, within CSW01_12095 at 2585.192 kb on - strand, within CSW01_12095 at 2585.192 kb on - strand, within CSW01_12095 at 2585.209 kb on - strand, within CSW01_12095 at 2585.265 kb on + strand, within CSW01_12095 at 2585.268 kb on - strand, within CSW01_12095 at 2585.328 kb on + strand at 2585.369 kb on - strand at 2585.369 kb on - strand at 2585.448 kb on + strand at 2585.543 kb on + strand at 2585.570 kb on + strand at 2585.570 kb on + strand at 2585.610 kb on + strand at 2585.610 kb on + strand at 2585.610 kb on + strand at 2585.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 2,583,404 + CSW01_12080 0.85 +0.7 2,583,427 - CSW01_12080 0.86 -0.3 2,583,497 + +0.6 2,583,510 + -0.2 2,583,516 + +0.1 2,583,518 - +0.6 2,583,526 + +0.9 2,583,568 + +0.3 2,583,685 + +0.5 2,583,691 - -0.2 2,583,691 - -0.1 2,583,731 + CSW01_12085 0.11 +0.3 2,583,732 + CSW01_12085 0.11 +0.0 2,583,759 + CSW01_12085 0.15 +0.2 2,583,764 + CSW01_12085 0.16 +0.1 2,583,790 + CSW01_12085 0.20 +0.7 2,583,790 + CSW01_12085 0.20 +0.9 2,583,791 + CSW01_12085 0.20 +0.1 2,583,795 + CSW01_12085 0.21 +0.3 2,583,795 + CSW01_12085 0.21 +0.3 2,583,796 + CSW01_12085 0.21 -0.1 2,583,797 + CSW01_12085 0.21 +0.3 2,583,798 + CSW01_12085 0.21 -0.8 2,583,805 + CSW01_12085 0.22 -0.4 2,583,805 - CSW01_12085 0.22 -1.1 2,583,805 - CSW01_12085 0.22 +0.4 2,583,807 + CSW01_12085 0.23 +0.9 2,583,813 + CSW01_12085 0.24 +0.3 2,583,815 - CSW01_12085 0.24 +0.3 2,583,821 - CSW01_12085 0.25 -0.8 2,583,821 - CSW01_12085 0.25 -0.4 2,583,821 - CSW01_12085 0.25 -0.2 2,583,936 + CSW01_12085 0.44 -0.1 2,584,015 + CSW01_12085 0.56 -0.8 2,584,031 - CSW01_12085 0.59 -0.2 2,584,033 - CSW01_12085 0.59 +0.3 2,584,104 + CSW01_12085 0.71 -0.2 2,584,104 + CSW01_12085 0.71 +1.0 2,584,297 + +1.5 2,584,305 - +0.1 2,584,329 - -0.5 2,584,360 + -0.7 2,584,390 + +0.2 2,584,395 - +0.0 2,584,396 + +1.1 2,584,396 + +0.1 2,584,396 + +1.3 2,584,396 + -0.2 2,584,402 + -0.0 2,584,407 + +0.9 2,584,407 + +0.4 2,584,407 + +0.5 2,584,407 + +0.3 2,584,407 + +0.9 2,584,407 + -0.7 2,584,407 + +0.1 2,584,407 + +0.5 2,584,407 + -0.0 2,584,407 + -0.2 2,584,407 + +0.5 2,584,407 + +0.3 2,584,408 + +0.5 2,584,415 - -0.1 2,584,415 - +0.6 2,584,415 - -0.3 2,584,415 - +0.1 2,584,415 - +0.2 2,584,415 - -0.3 2,584,415 - -0.3 2,584,415 - +0.7 2,584,415 - -0.2 2,584,415 - -0.2 2,584,417 + +0.2 2,584,431 + CSW01_12090 0.14 +0.1 2,584,516 + CSW01_12090 0.40 +0.1 2,584,555 + CSW01_12090 0.53 -1.7 2,584,560 - CSW01_12090 0.54 +1.1 2,584,602 - CSW01_12090 0.67 +0.4 2,584,612 - CSW01_12090 0.70 +0.6 2,584,612 - CSW01_12090 0.70 -0.3 2,584,673 + CSW01_12090 0.90 +0.7 2,584,673 + CSW01_12090 0.90 +0.4 2,584,714 + +0.4 2,584,737 + +0.5 2,584,737 + +0.4 2,584,743 + +0.0 2,584,743 + +0.9 2,584,745 - -0.1 2,584,751 - +1.3 2,584,751 - -0.0 2,584,751 - +0.1 2,584,751 - +1.7 2,584,751 - +0.8 2,584,763 - -0.3 2,584,925 + +0.7 2,584,925 + -0.4 2,584,925 + -1.0 2,584,933 - +0.8 2,584,933 - +0.4 2,584,933 - +0.4 2,585,002 - CSW01_12095 0.22 +0.4 2,585,002 - CSW01_12095 0.22 -1.0 2,585,002 - CSW01_12095 0.22 -0.0 2,585,017 - CSW01_12095 0.25 -0.2 2,585,041 - CSW01_12095 0.30 +0.7 2,585,117 + CSW01_12095 0.46 +0.2 2,585,125 - CSW01_12095 0.48 +1.5 2,585,192 - CSW01_12095 0.62 +0.2 2,585,192 - CSW01_12095 0.62 +0.6 2,585,209 - CSW01_12095 0.65 -1.0 2,585,265 + CSW01_12095 0.77 -0.7 2,585,268 - CSW01_12095 0.77 +0.8 2,585,328 + +0.4 2,585,369 - -0.1 2,585,369 - +0.9 2,585,448 + -0.4 2,585,543 + -0.3 2,585,570 + +0.2 2,585,570 + +0.8 2,585,610 + -0.6 2,585,610 + +0.5 2,585,610 + -0.2 2,585,618 - +0.0
Or see this region's nucleotide sequence