Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09760

Experiment: LB_Anaerobic_180MIN_ZN16B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_180MIN_ZN16B
2,101,974	+		CSW01_09755	0.35	-0.1
2,101,974	+		CSW01_09755	0.35	-0.3
2,101,987	-		CSW01_09755	0.36	-0.4
2,101,987	-		CSW01_09755	0.36	-0.5
2,101,993	+		CSW01_09755	0.37	+0.4
2,102,008	-		CSW01_09755	0.38	-1.0
2,102,010	-		CSW01_09755	0.39	+1.1
2,102,010	-		CSW01_09755	0.39	-0.4
2,102,010	-		CSW01_09755	0.39	-0.7
2,102,018	+		CSW01_09755	0.39	+0.9
2,102,040	+		CSW01_09755	0.41	+0.4
2,102,160	+		CSW01_09755	0.52	-0.9
2,102,176	-		CSW01_09755	0.54	+0.1
2,102,186	-		CSW01_09755	0.54	+0.1
2,102,188	+		CSW01_09755	0.55	-0.4
2,102,355	+		CSW01_09755	0.70	-1.2
2,102,355	+		CSW01_09755	0.70	+0.1
2,102,363	-		CSW01_09755	0.70	-0.0
2,102,363	-		CSW01_09755	0.70	-1.1
2,102,378	+		CSW01_09755	0.72	+1.0
2,102,378	+		CSW01_09755	0.72	+1.5
2,102,453	+		CSW01_09755	0.79	+1.6
2,102,525	-		CSW01_09755	0.85	+0.2
2,102,527	+		CSW01_09755	0.85	+0.3
2,102,601	-				+2.1
2,102,601	-				-0.1
2,102,640	+				-0.1
2,102,658	-				+0.7
2,102,680	+				+0.3
2,102,687	-				+0.1
2,102,733	-				+0.6
2,102,825	-				-0.5
2,102,865	+				-0.1
2,102,865	+				-0.2
2,102,949	-				+0.3
2,102,964	+				+0.2
2,103,021	+				-0.1
2,103,021	+				+0.4
2,103,032	+				-1.4
2,103,066	-				+0.1
2,103,068	+				-0.1
2,103,157	+				-0.5
2,103,212	-		CSW01_09760	0.11	-2.9
2,103,212	-		CSW01_09760	0.11	+0.3
2,103,280	+		CSW01_09760	0.13	-2.2
2,103,300	+		CSW01_09760	0.14	+0.6
2,103,302	+		CSW01_09760	0.14	-3.3
2,103,302	+		CSW01_09760	0.14	+0.2
2,103,310	-		CSW01_09760	0.14	+0.3
2,103,310	-		CSW01_09760	0.14	+1.0
2,103,358	-		CSW01_09760	0.16	+0.6
2,103,371	+		CSW01_09760	0.17	+0.6
2,103,371	+		CSW01_09760	0.17	+0.0
2,103,379	-		CSW01_09760	0.17	-0.7
2,103,379	-		CSW01_09760	0.17	-0.5
2,103,417	+		CSW01_09760	0.19	-0.4
2,103,505	+		CSW01_09760	0.22	-1.3
2,103,513	-		CSW01_09760	0.22	+0.3
2,103,513	-		CSW01_09760	0.22	-0.5
2,103,513	-		CSW01_09760	0.22	+0.1
2,103,549	-		CSW01_09760	0.24	-2.2
2,103,572	-		CSW01_09760	0.25	+0.8
2,103,587	+		CSW01_09760	0.25	-0.0
2,103,588	-		CSW01_09760	0.25	-0.7
2,103,636	-		CSW01_09760	0.27	+1.1
2,103,645	+		CSW01_09760	0.28	-1.2
2,103,645	+		CSW01_09760	0.28	+0.3
2,103,646	-		CSW01_09760	0.28	+0.5
2,103,647	-		CSW01_09760	0.28	-0.2
2,103,653	-		CSW01_09760	0.28	+0.6
2,103,653	-		CSW01_09760	0.28	-0.9
2,103,653	-		CSW01_09760	0.28	-0.3
2,103,653	-		CSW01_09760	0.28	-0.5
2,103,653	-		CSW01_09760	0.28	-1.6
2,103,653	-		CSW01_09760	0.28	+0.2
2,103,655	+		CSW01_09760	0.28	+0.1
2,103,734	+		CSW01_09760	0.31	+0.1
2,103,734	+		CSW01_09760	0.31	+0.7
2,103,742	-		CSW01_09760	0.31	+0.1
2,103,752	-		CSW01_09760	0.32	-0.4
2,103,837	+		CSW01_09760	0.35	-1.0
2,103,837	+		CSW01_09760	0.35	+0.2
2,103,872	+		CSW01_09760	0.37	-0.6
2,103,976	+		CSW01_09760	0.41	-1.4
2,104,007	+		CSW01_09760	0.42	+0.2
2,104,053	+		CSW01_09760	0.44	+0.8
2,104,058	+		CSW01_09760	0.44	-0.9
2,104,058	+		CSW01_09760	0.44	-0.7
2,104,066	-		CSW01_09760	0.44	-0.6
2,104,066	-		CSW01_09760	0.44	+0.2
2,104,125	-		CSW01_09760	0.46	+0.0
2,104,142	+		CSW01_09760	0.47	+1.1
2,104,156	+		CSW01_09760	0.48	+1.3
2,104,156	+		CSW01_09760	0.48	+0.6
2,104,247	+		CSW01_09760	0.51	+0.2
2,104,309	+		CSW01_09760	0.54	-0.2
2,104,336	-		CSW01_09760	0.55	-0.1
2,104,341	+		CSW01_09760	0.55	-0.3
2,104,341	+		CSW01_09760	0.55	+1.0
2,104,349	-		CSW01_09760	0.55	+2.4
2,104,410	+		CSW01_09760	0.58	+0.5
2,104,452	+		CSW01_09760	0.59	+0.4
2,104,462	+		CSW01_09760	0.60	+1.0
2,104,462	+		CSW01_09760	0.60	-0.2
2,104,468	+		CSW01_09760	0.60	-0.8
2,104,495	+		CSW01_09760	0.61	-0.0
2,104,655	+		CSW01_09760	0.67	-0.3
2,104,674	+		CSW01_09760	0.68	+0.6
2,104,701	-		CSW01_09760	0.69	-0.2
2,104,716	+		CSW01_09760	0.70	+0.2
2,104,719	-		CSW01_09760	0.70	+0.5
2,104,724	-		CSW01_09760	0.70	+0.9
2,104,762	+		CSW01_09760	0.72	+0.8
2,104,780	-		CSW01_09760	0.72	-0.3
2,104,797	+		CSW01_09760	0.73	+0.0
2,104,805	-		CSW01_09760	0.73	-0.7
2,104,847	+		CSW01_09760	0.75	-0.1
2,104,864	-		CSW01_09760	0.76	+1.3
2,104,928	+		CSW01_09760	0.78	-0.2
2,104,958	+		CSW01_09760	0.79	+1.3
2,104,958	+		CSW01_09760	0.79	-0.2
2,104,965	-		CSW01_09760	0.80	+0.3
2,104,971	+		CSW01_09760	0.80	+1.8
2,104,979	-		CSW01_09760	0.80	-0.5
2,104,991	-		CSW01_09760	0.81	+1.0
2,105,068	-		CSW01_09760	0.84	+0.5
2,105,130	+		CSW01_09760	0.86	+0.6
2,105,161	+		CSW01_09760	0.87	-0.4
2,105,190	-		CSW01_09760	0.88	-0.1
2,105,203	+		CSW01_09760	0.89	-0.6
2,105,224	+		CSW01_09760	0.90	-0.4
2,105,249	+				+0.0
2,105,249	+				+0.1
2,105,257	-				+0.5
2,105,257	-				+0.2
2,105,257	-				-0.1
2,105,267	-				+0.2
2,105,267	-				+1.0
2,105,281	+				-0.5
2,105,289	-				+0.2
2,105,376	+				-0.1
2,105,381	+				+0.4
2,105,387	-				-0.6
2,105,389	+				+0.4
2,105,389	+				-0.5
2,105,413	+				+0.6
2,105,419	+				+0.5
2,105,419	+				+0.1
2,105,419	+				-0.6
2,105,419	+				-0.6
2,105,421	-				+0.3
2,105,421	-				-0.9
2,105,421	-				+0.2
2,105,421	-				+0.1
2,105,427	-				-0.1
2,105,437	-				+0.5
2,105,496	+				+0.6
2,105,572	+				+0.0
2,105,784	+				-1.2
2,105,790	-				+0.3
2,105,865	+				+0.4
2,105,868	-				+0.6
2,106,108	+		CSW01_09765	0.30	+0.4
2,106,109	-		CSW01_09765	0.30	+0.8
2,106,116	-		CSW01_09765	0.30	+0.1
2,106,151	+		CSW01_09765	0.33	-1.7
2,106,232	-		CSW01_09765	0.40	-0.3
2,106,242	-		CSW01_09765	0.41	-0.9
2,106,360	+		CSW01_09765	0.50	-0.0
2,106,392	-		CSW01_09765	0.53	-0.0
2,106,405	-		CSW01_09765	0.54	-0.3
2,106,445	-		CSW01_09765	0.57	-0.1