Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07240

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07230 and CSW01_07235 are separated by 228 nucleotidesCSW01_07235 and CSW01_07240 are separated by 68 nucleotidesCSW01_07240 and CSW01_07245 overlap by 4 nucleotides CSW01_07230: CSW01_07230 - cytochrome-c oxidase, cbb3-type subunit I, at 1,536,879 to 1,538,312 _07230 CSW01_07235: CSW01_07235 - hypothetical protein, at 1,538,541 to 1,538,921 _07235 CSW01_07240: CSW01_07240 - histidine kinase, at 1,538,990 to 1,540,207 _07240 CSW01_07245: CSW01_07245 - hybrid sensor histidine kinase/response regulator, at 1,540,204 to 1,541,922 _07245 Position (kb) 1538 1539 1540 1541Strain fitness (log2 ratio) -2 -1 0 1 2at 1538.322 kb on - strandat 1538.673 kb on + strand, within CSW01_07235at 1538.746 kb on + strand, within CSW01_07235at 1538.782 kb on + strand, within CSW01_07235at 1538.840 kb on - strand, within CSW01_07235at 1538.896 kb on + strandat 1538.904 kb on - strandat 1538.904 kb on - strandat 1538.904 kb on - strandat 1538.906 kb on + strandat 1538.943 kb on + strandat 1538.951 kb on - strandat 1538.980 kb on + strandat 1538.988 kb on - strandat 1539.085 kb on + strandat 1539.085 kb on - strandat 1539.218 kb on - strand, within CSW01_07240at 1539.243 kb on - strand, within CSW01_07240at 1539.298 kb on - strand, within CSW01_07240at 1539.302 kb on + strand, within CSW01_07240at 1539.302 kb on + strand, within CSW01_07240at 1539.302 kb on + strand, within CSW01_07240at 1539.302 kb on + strand, within CSW01_07240at 1539.310 kb on - strand, within CSW01_07240at 1539.373 kb on - strand, within CSW01_07240at 1539.402 kb on + strand, within CSW01_07240at 1539.618 kb on - strand, within CSW01_07240at 1539.628 kb on - strand, within CSW01_07240at 1539.630 kb on - strand, within CSW01_07240at 1539.659 kb on + strand, within CSW01_07240at 1539.659 kb on + strand, within CSW01_07240at 1539.659 kb on + strand, within CSW01_07240at 1539.659 kb on + strand, within CSW01_07240at 1539.666 kb on - strand, within CSW01_07240at 1539.673 kb on - strand, within CSW01_07240at 1539.785 kb on + strand, within CSW01_07240at 1539.785 kb on + strand, within CSW01_07240at 1539.785 kb on + strand, within CSW01_07240at 1539.793 kb on - strand, within CSW01_07240at 1539.806 kb on + strand, within CSW01_07240at 1539.819 kb on + strand, within CSW01_07240at 1539.827 kb on - strand, within CSW01_07240at 1539.827 kb on - strand, within CSW01_07240at 1539.827 kb on - strand, within CSW01_07240at 1539.842 kb on - strand, within CSW01_07240at 1539.872 kb on + strand, within CSW01_07240at 1539.910 kb on - strand, within CSW01_07240at 1540.021 kb on + strand, within CSW01_07240at 1540.029 kb on - strand, within CSW01_07240at 1540.046 kb on - strand, within CSW01_07240at 1540.049 kb on + strand, within CSW01_07240at 1540.052 kb on - strand, within CSW01_07240at 1540.090 kb on + strandat 1540.090 kb on + strandat 1540.090 kb on + strandat 1540.090 kb on + strandat 1540.098 kb on - strandat 1540.098 kb on - strandat 1540.098 kb on - strandat 1540.122 kb on + strandat 1540.130 kb on + strandat 1540.138 kb on - strandat 1540.255 kb on - strandat 1540.265 kb on + strandat 1540.265 kb on + strandat 1540.276 kb on + strandat 1540.291 kb on + strandat 1540.291 kb on + strandat 1540.296 kb on + strandat 1540.299 kb on - strandat 1540.299 kb on - strandat 1540.304 kb on - strandat 1540.309 kb on - strandat 1540.339 kb on - strandat 1540.423 kb on + strand, within CSW01_07245at 1540.465 kb on - strand, within CSW01_07245at 1540.513 kb on + strand, within CSW01_07245at 1540.515 kb on + strand, within CSW01_07245at 1540.515 kb on + strand, within CSW01_07245at 1540.521 kb on - strand, within CSW01_07245at 1540.523 kb on - strand, within CSW01_07245at 1540.530 kb on - strand, within CSW01_07245at 1540.539 kb on + strand, within CSW01_07245at 1540.539 kb on + strand, within CSW01_07245at 1540.571 kb on + strand, within CSW01_07245at 1540.579 kb on - strand, within CSW01_07245at 1540.579 kb on - strand, within CSW01_07245at 1540.596 kb on + strand, within CSW01_07245at 1540.606 kb on + strand, within CSW01_07245at 1540.640 kb on + strand, within CSW01_07245at 1540.640 kb on + strand, within CSW01_07245at 1540.640 kb on + strand, within CSW01_07245at 1540.650 kb on + strand, within CSW01_07245at 1540.658 kb on - strand, within CSW01_07245at 1540.658 kb on - strand, within CSW01_07245at 1540.658 kb on - strand, within CSW01_07245at 1540.680 kb on - strand, within CSW01_07245at 1540.722 kb on + strand, within CSW01_07245at 1540.730 kb on - strand, within CSW01_07245at 1540.865 kb on - strand, within CSW01_07245at 1540.870 kb on - strand, within CSW01_07245at 1540.877 kb on - strand, within CSW01_07245at 1540.877 kb on - strand, within CSW01_07245at 1540.879 kb on + strand, within CSW01_07245at 1540.887 kb on - strand, within CSW01_07245at 1540.921 kb on + strand, within CSW01_07245at 1540.931 kb on - strand, within CSW01_07245at 1541.013 kb on - strand, within CSW01_07245at 1541.039 kb on - strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.109 kb on + strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.117 kb on - strand, within CSW01_07245at 1541.152 kb on + strand, within CSW01_07245at 1541.153 kb on + strand, within CSW01_07245at 1541.160 kb on + strand, within CSW01_07245at 1541.173 kb on - strand, within CSW01_07245at 1541.180 kb on + strand, within CSW01_07245at 1541.180 kb on + strand, within CSW01_07245at 1541.180 kb on + strand, within CSW01_07245at 1541.188 kb on - strand, within CSW01_07245at 1541.188 kb on - strand, within CSW01_07245at 1541.188 kb on - strand, within CSW01_07245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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1,538,322 - +1.1
1,538,673 + CSW01_07235 0.35 +0.2
1,538,746 + CSW01_07235 0.54 +0.2
1,538,782 + CSW01_07235 0.63 +0.3
1,538,840 - CSW01_07235 0.78 -1.5
1,538,896 + -0.4
1,538,904 - -0.2
1,538,904 - -0.4
1,538,904 - +1.0
1,538,906 + +2.3
1,538,943 + +1.4
1,538,951 - +0.1
1,538,980 + +1.0
1,538,988 - +0.1
1,539,085 + +0.7
1,539,085 - +0.0
1,539,218 - CSW01_07240 0.19 +0.1
1,539,243 - CSW01_07240 0.21 +1.5
1,539,298 - CSW01_07240 0.25 +1.4
1,539,302 + CSW01_07240 0.26 +0.1
1,539,302 + CSW01_07240 0.26 +0.6
1,539,302 + CSW01_07240 0.26 +0.4
1,539,302 + CSW01_07240 0.26 -0.5
1,539,310 - CSW01_07240 0.26 -0.0
1,539,373 - CSW01_07240 0.31 +0.0
1,539,402 + CSW01_07240 0.34 -0.0
1,539,618 - CSW01_07240 0.52 -1.2
1,539,628 - CSW01_07240 0.52 +0.3
1,539,630 - CSW01_07240 0.53 +0.2
1,539,659 + CSW01_07240 0.55 -0.4
1,539,659 + CSW01_07240 0.55 +0.9
1,539,659 + CSW01_07240 0.55 -0.1
1,539,659 + CSW01_07240 0.55 +0.3
1,539,666 - CSW01_07240 0.56 +1.2
1,539,673 - CSW01_07240 0.56 +0.1
1,539,785 + CSW01_07240 0.65 +2.0
1,539,785 + CSW01_07240 0.65 +1.2
1,539,785 + CSW01_07240 0.65 +0.9
1,539,793 - CSW01_07240 0.66 +0.7
1,539,806 + CSW01_07240 0.67 -2.1
1,539,819 + CSW01_07240 0.68 +1.0
1,539,827 - CSW01_07240 0.69 +0.6
1,539,827 - CSW01_07240 0.69 +2.4
1,539,827 - CSW01_07240 0.69 +0.9
1,539,842 - CSW01_07240 0.70 +0.5
1,539,872 + CSW01_07240 0.72 +0.2
1,539,910 - CSW01_07240 0.76 -0.1
1,540,021 + CSW01_07240 0.85 +0.5
1,540,029 - CSW01_07240 0.85 +0.9
1,540,046 - CSW01_07240 0.87 +0.7
1,540,049 + CSW01_07240 0.87 +0.2
1,540,052 - CSW01_07240 0.87 +1.1
1,540,090 + +0.7
1,540,090 + +0.3
1,540,090 + +0.2
1,540,090 + +1.0
1,540,098 - -0.3
1,540,098 - -0.1
1,540,098 - +0.2
1,540,122 + +0.1
1,540,130 + -0.7
1,540,138 - +0.7
1,540,255 - -0.2
1,540,265 + +0.3
1,540,265 + +0.6
1,540,276 + -0.1
1,540,291 + +0.1
1,540,291 + +0.0
1,540,296 + -0.1
1,540,299 - +0.0
1,540,299 - +0.2
1,540,304 - +1.3
1,540,309 - +1.0
1,540,339 - -0.7
1,540,423 + CSW01_07245 0.13 +0.4
1,540,465 - CSW01_07245 0.15 +0.5
1,540,513 + CSW01_07245 0.18 -0.4
1,540,515 + CSW01_07245 0.18 +0.1
1,540,515 + CSW01_07245 0.18 -0.3
1,540,521 - CSW01_07245 0.18 +1.4
1,540,523 - CSW01_07245 0.19 -0.6
1,540,530 - CSW01_07245 0.19 +0.2
1,540,539 + CSW01_07245 0.19 +0.2
1,540,539 + CSW01_07245 0.19 +0.5
1,540,571 + CSW01_07245 0.21 +1.2
1,540,579 - CSW01_07245 0.22 +1.0
1,540,579 - CSW01_07245 0.22 +0.3
1,540,596 + CSW01_07245 0.23 +0.5
1,540,606 + CSW01_07245 0.23 +0.4
1,540,640 + CSW01_07245 0.25 +1.4
1,540,640 + CSW01_07245 0.25 -1.2
1,540,640 + CSW01_07245 0.25 +0.7
1,540,650 + CSW01_07245 0.26 +1.9
1,540,658 - CSW01_07245 0.26 +0.2
1,540,658 - CSW01_07245 0.26 -0.6
1,540,658 - CSW01_07245 0.26 -0.8
1,540,680 - CSW01_07245 0.28 +0.5
1,540,722 + CSW01_07245 0.30 +0.3
1,540,730 - CSW01_07245 0.31 +0.3
1,540,865 - CSW01_07245 0.38 +0.7
1,540,870 - CSW01_07245 0.39 -0.5
1,540,877 - CSW01_07245 0.39 -0.9
1,540,877 - CSW01_07245 0.39 +1.0
1,540,879 + CSW01_07245 0.39 +1.1
1,540,887 - CSW01_07245 0.40 +0.1
1,540,921 + CSW01_07245 0.42 +1.1
1,540,931 - CSW01_07245 0.42 -0.5
1,541,013 - CSW01_07245 0.47 +0.1
1,541,039 - CSW01_07245 0.49 +0.5
1,541,109 + CSW01_07245 0.53 +0.5
1,541,109 + CSW01_07245 0.53 -0.2
1,541,109 + CSW01_07245 0.53 +0.7
1,541,109 + CSW01_07245 0.53 +0.9
1,541,109 + CSW01_07245 0.53 -0.5
1,541,109 + CSW01_07245 0.53 +0.3
1,541,109 + CSW01_07245 0.53 +0.3
1,541,109 + CSW01_07245 0.53 +0.3
1,541,109 + CSW01_07245 0.53 +2.2
1,541,109 + CSW01_07245 0.53 +1.0
1,541,109 + CSW01_07245 0.53 +1.4
1,541,109 + CSW01_07245 0.53 +0.5
1,541,109 + CSW01_07245 0.53 +0.9
1,541,109 + CSW01_07245 0.53 -0.2
1,541,109 + CSW01_07245 0.53 +0.4
1,541,117 - CSW01_07245 0.53 +0.3
1,541,117 - CSW01_07245 0.53 -0.1
1,541,117 - CSW01_07245 0.53 -0.6
1,541,117 - CSW01_07245 0.53 -0.1
1,541,117 - CSW01_07245 0.53 -0.5
1,541,117 - CSW01_07245 0.53 +1.6
1,541,117 - CSW01_07245 0.53 +0.8
1,541,117 - CSW01_07245 0.53 +0.2
1,541,117 - CSW01_07245 0.53 +0.8
1,541,117 - CSW01_07245 0.53 +0.4
1,541,152 + CSW01_07245 0.55 -0.3
1,541,153 + CSW01_07245 0.55 -0.2
1,541,160 + CSW01_07245 0.56 -0.0
1,541,173 - CSW01_07245 0.56 +0.0
1,541,180 + CSW01_07245 0.57 -0.2
1,541,180 + CSW01_07245 0.57 -0.2
1,541,180 + CSW01_07245 0.57 +0.7
1,541,188 - CSW01_07245 0.57 +0.8
1,541,188 - CSW01_07245 0.57 +0.9
1,541,188 - CSW01_07245 0.57 +1.7

Or see this region's nucleotide sequence