Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04200

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04195 and CSW01_04200 are separated by 427 nucleotidesCSW01_04200 and CSW01_04205 overlap by 16 nucleotides CSW01_04195: CSW01_04195 - class I SAM-dependent methyltransferase, at 868,550 to 869,128 _04195 CSW01_04200: CSW01_04200 - XRE family transcriptional regulator, at 869,556 to 870,035 _04200 CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390 _04205 Position (kb) 869 870 871Strain fitness (log2 ratio) -2 -1 0 1 2at 868.599 kb on + strandat 868.599 kb on + strandat 868.607 kb on - strandat 868.617 kb on + strand, within CSW01_04195at 868.617 kb on + strand, within CSW01_04195at 868.617 kb on + strand, within CSW01_04195at 868.710 kb on + strand, within CSW01_04195at 868.715 kb on + strand, within CSW01_04195at 868.855 kb on - strand, within CSW01_04195at 868.927 kb on - strand, within CSW01_04195at 868.988 kb on + strand, within CSW01_04195at 868.990 kb on - strand, within CSW01_04195at 869.006 kb on + strand, within CSW01_04195at 869.016 kb on + strand, within CSW01_04195at 869.019 kb on - strand, within CSW01_04195at 869.022 kb on - strand, within CSW01_04195at 869.029 kb on - strand, within CSW01_04195at 869.039 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.045 kb on - strand, within CSW01_04195at 869.069 kb on + strand, within CSW01_04195at 869.160 kb on + strandat 869.160 kb on + strandat 869.166 kb on + strandat 869.203 kb on + strandat 869.203 kb on + strandat 869.205 kb on + strandat 869.210 kb on - strandat 869.275 kb on + strandat 869.283 kb on - strandat 869.337 kb on - strandat 870.121 kb on + strandat 870.121 kb on + strandat 870.121 kb on + strandat 870.129 kb on - strandat 870.130 kb on - strandat 870.197 kb on + strand, within CSW01_04205at 870.200 kb on - strand, within CSW01_04205at 870.243 kb on - strand, within CSW01_04205at 870.246 kb on - strand, within CSW01_04205at 870.326 kb on - strand, within CSW01_04205at 870.327 kb on - strand, within CSW01_04205at 870.328 kb on - strand, within CSW01_04205at 870.330 kb on + strand, within CSW01_04205at 870.364 kb on + strand, within CSW01_04205at 870.440 kb on + strand, within CSW01_04205at 870.448 kb on - strand, within CSW01_04205at 870.448 kb on - strand, within CSW01_04205at 870.544 kb on - strand, within CSW01_04205at 870.627 kb on - strand, within CSW01_04205at 870.629 kb on + strand, within CSW01_04205at 870.710 kb on - strand, within CSW01_04205at 870.758 kb on + strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.889 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.907 kb on - strand, within CSW01_04205at 870.912 kb on + strand, within CSW01_04205at 870.930 kb on - strand, within CSW01_04205at 870.991 kb on - strand, within CSW01_04205at 871.023 kb on - strand, within CSW01_04205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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868,599 + -1.0
868,599 + +0.6
868,607 - +0.7
868,617 + CSW01_04195 0.12 -1.3
868,617 + CSW01_04195 0.12 -0.2
868,617 + CSW01_04195 0.12 -0.1
868,710 + CSW01_04195 0.28 -1.5
868,715 + CSW01_04195 0.28 +0.1
868,855 - CSW01_04195 0.53 -0.8
868,927 - CSW01_04195 0.65 -1.1
868,988 + CSW01_04195 0.76 -0.3
868,990 - CSW01_04195 0.76 +0.8
869,006 + CSW01_04195 0.79 -0.9
869,016 + CSW01_04195 0.80 +0.0
869,019 - CSW01_04195 0.81 +0.8
869,022 - CSW01_04195 0.82 -1.1
869,029 - CSW01_04195 0.83 -0.5
869,039 - CSW01_04195 0.84 -1.1
869,045 - CSW01_04195 0.85 -0.4
869,045 - CSW01_04195 0.85 -0.4
869,069 + CSW01_04195 0.90 +0.0
869,160 + -0.8
869,160 + +0.6
869,166 + -0.6
869,203 + -0.9
869,203 + -0.4
869,205 + +0.5
869,210 - +0.6
869,275 + +0.5
869,283 - -0.4
869,337 - +0.2
870,121 + +0.1
870,121 + +0.3
870,121 + -0.3
870,129 - -0.1
870,130 - +0.6
870,197 + CSW01_04205 0.13 +0.3
870,200 - CSW01_04205 0.13 -0.7
870,243 - CSW01_04205 0.16 +0.5
870,246 - CSW01_04205 0.16 +0.7
870,326 - CSW01_04205 0.22 +0.0
870,327 - CSW01_04205 0.22 +0.9
870,328 - CSW01_04205 0.22 +0.6
870,330 + CSW01_04205 0.23 +0.1
870,364 + CSW01_04205 0.25 +0.5
870,440 + CSW01_04205 0.31 +0.2
870,448 - CSW01_04205 0.31 +1.1
870,448 - CSW01_04205 0.31 +0.0
870,544 - CSW01_04205 0.38 +0.3
870,627 - CSW01_04205 0.44 +0.0
870,629 + CSW01_04205 0.44 +0.4
870,710 - CSW01_04205 0.50 +0.2
870,758 + CSW01_04205 0.54 +0.2
870,873 - CSW01_04205 0.62 -0.3
870,873 - CSW01_04205 0.62 +1.9
870,889 + CSW01_04205 0.63 +1.1
870,899 + CSW01_04205 0.64 -0.1
870,899 + CSW01_04205 0.64 +0.6
870,907 - CSW01_04205 0.65 -0.4
870,912 + CSW01_04205 0.65 -2.1
870,930 - CSW01_04205 0.66 +0.1
870,991 - CSW01_04205 0.71 -0.4
871,023 - CSW01_04205 0.73 -0.7

Or see this region's nucleotide sequence