Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03750

Experiment: LB_Anaerobic_180MIN_ZN16B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03740 and CSW01_03745 are separated by 34 nucleotidesCSW01_03745 and CSW01_03750 are separated by 2 nucleotidesCSW01_03750 and CSW01_03755 are separated by 150 nucleotides CSW01_03740: CSW01_03740 - oxygen-insensitive NADPH nitroreductase, at 767,297 to 768,019 _03740 CSW01_03745: CSW01_03745 - ferredoxin, at 768,054 to 768,308 _03745 CSW01_03750: CSW01_03750 - U32 family peptidase, at 768,311 to 769,711 _03750 CSW01_03755: CSW01_03755 - recombination-associated protein RdgC, at 769,862 to 770,776 _03755 Position (kb) 768 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 767.572 kb on + strand, within CSW01_03740at 767.663 kb on + strand, within CSW01_03740at 767.671 kb on - strand, within CSW01_03740at 767.747 kb on + strand, within CSW01_03740at 767.921 kb on + strand, within CSW01_03740at 768.008 kb on + strandat 768.027 kb on + strandat 768.253 kb on - strand, within CSW01_03745at 768.255 kb on - strand, within CSW01_03745at 768.351 kb on + strandat 768.365 kb on - strandat 768.377 kb on - strandat 768.379 kb on + strandat 768.382 kb on - strandat 768.677 kb on + strand, within CSW01_03750at 768.685 kb on + strand, within CSW01_03750at 768.832 kb on - strand, within CSW01_03750at 768.832 kb on - strand, within CSW01_03750at 768.845 kb on + strand, within CSW01_03750at 768.854 kb on + strand, within CSW01_03750at 768.862 kb on - strand, within CSW01_03750at 768.995 kb on + strand, within CSW01_03750at 769.022 kb on + strand, within CSW01_03750at 769.038 kb on + strand, within CSW01_03750at 769.046 kb on - strand, within CSW01_03750at 769.046 kb on - strand, within CSW01_03750at 769.048 kb on + strand, within CSW01_03750at 769.055 kb on + strand, within CSW01_03750at 769.190 kb on - strand, within CSW01_03750at 769.218 kb on - strand, within CSW01_03750at 769.320 kb on + strand, within CSW01_03750at 769.399 kb on + strand, within CSW01_03750at 769.404 kb on + strand, within CSW01_03750at 769.418 kb on - strand, within CSW01_03750at 769.418 kb on - strand, within CSW01_03750at 769.454 kb on - strand, within CSW01_03750at 769.474 kb on + strand, within CSW01_03750at 769.474 kb on + strand, within CSW01_03750at 769.474 kb on + strand, within CSW01_03750at 769.474 kb on + strand, within CSW01_03750at 769.482 kb on - strand, within CSW01_03750at 769.494 kb on + strand, within CSW01_03750at 769.525 kb on + strand, within CSW01_03750at 769.600 kb on - strandat 769.671 kb on + strandat 769.671 kb on + strandat 769.671 kb on + strandat 769.679 kb on - strandat 769.679 kb on - strandat 769.679 kb on - strandat 769.745 kb on + strandat 769.748 kb on - strandat 769.748 kb on - strandat 769.753 kb on - strandat 769.753 kb on - strandat 769.753 kb on - strandat 769.771 kb on - strandat 769.771 kb on - strandat 769.800 kb on + strandat 770.105 kb on + strand, within CSW01_03755at 770.143 kb on - strand, within CSW01_03755at 770.184 kb on + strand, within CSW01_03755at 770.189 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.236 kb on + strand, within CSW01_03755at 770.244 kb on - strand, within CSW01_03755at 770.303 kb on + strand, within CSW01_03755at 770.340 kb on - strand, within CSW01_03755at 770.510 kb on - strand, within CSW01_03755at 770.625 kb on + strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.638 kb on - strand, within CSW01_03755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
remove
767,572 + CSW01_03740 0.38 +0.4
767,663 + CSW01_03740 0.51 +0.3
767,671 - CSW01_03740 0.52 +0.5
767,747 + CSW01_03740 0.62 +0.5
767,921 + CSW01_03740 0.86 +0.9
768,008 + +0.5
768,027 + -0.7
768,253 - CSW01_03745 0.78 -0.5
768,255 - CSW01_03745 0.79 +0.2
768,351 + +0.8
768,365 - -0.3
768,377 - -0.3
768,379 + -0.0
768,382 - -0.4
768,677 + CSW01_03750 0.26 +2.3
768,685 + CSW01_03750 0.27 +0.9
768,832 - CSW01_03750 0.37 -1.6
768,832 - CSW01_03750 0.37 +1.4
768,845 + CSW01_03750 0.38 +0.7
768,854 + CSW01_03750 0.39 +0.1
768,862 - CSW01_03750 0.39 +0.2
768,995 + CSW01_03750 0.49 +0.1
769,022 + CSW01_03750 0.51 +1.1
769,038 + CSW01_03750 0.52 +0.4
769,046 - CSW01_03750 0.52 +0.1
769,046 - CSW01_03750 0.52 -0.1
769,048 + CSW01_03750 0.53 +1.1
769,055 + CSW01_03750 0.53 -0.4
769,190 - CSW01_03750 0.63 +0.3
769,218 - CSW01_03750 0.65 +0.3
769,320 + CSW01_03750 0.72 +0.6
769,399 + CSW01_03750 0.78 -0.9
769,404 + CSW01_03750 0.78 +0.0
769,418 - CSW01_03750 0.79 -0.2
769,418 - CSW01_03750 0.79 +0.7
769,454 - CSW01_03750 0.82 +0.3
769,474 + CSW01_03750 0.83 -0.1
769,474 + CSW01_03750 0.83 -0.0
769,474 + CSW01_03750 0.83 +0.6
769,474 + CSW01_03750 0.83 -1.1
769,482 - CSW01_03750 0.84 -0.4
769,494 + CSW01_03750 0.84 -0.5
769,525 + CSW01_03750 0.87 +0.3
769,600 - -0.9
769,671 + +0.0
769,671 + +0.6
769,671 + -0.6
769,679 - -0.2
769,679 - -1.3
769,679 - -2.0
769,745 + +0.3
769,748 - +0.3
769,748 - +0.1
769,753 - -0.4
769,753 - +0.2
769,753 - +0.7
769,771 - -0.1
769,771 - +0.7
769,800 + +0.3
770,105 + CSW01_03755 0.27 +0.0
770,143 - CSW01_03755 0.31 -0.0
770,184 + CSW01_03755 0.35 +1.1
770,189 + CSW01_03755 0.36 -0.7
770,209 + CSW01_03755 0.38 -0.8
770,209 + CSW01_03755 0.38 +0.0
770,209 + CSW01_03755 0.38 +0.6
770,209 + CSW01_03755 0.38 -0.1
770,217 - CSW01_03755 0.39 +1.1
770,217 - CSW01_03755 0.39 +0.1
770,217 - CSW01_03755 0.39 +0.5
770,236 + CSW01_03755 0.41 +0.5
770,244 - CSW01_03755 0.42 +0.9
770,303 + CSW01_03755 0.48 -0.2
770,340 - CSW01_03755 0.52 +2.3
770,510 - CSW01_03755 0.71 +0.2
770,625 + CSW01_03755 0.83 +0.1
770,633 - CSW01_03755 0.84 +0.1
770,633 - CSW01_03755 0.84 +0.5
770,633 - CSW01_03755 0.84 -0.4
770,633 - CSW01_03755 0.84 +0.3
770,638 - CSW01_03755 0.85 -0.2

Or see this region's nucleotide sequence