Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02430

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02425 and CSW01_02430 overlap by 7 nucleotidesCSW01_02430 and CSW01_02435 are separated by 69 nucleotidesCSW01_02435 and CSW01_02440 are separated by 45 nucleotidesCSW01_02440 and CSW01_02445 overlap by 1 nucleotides CSW01_02425: CSW01_02425 - YggW family oxidoreductase, at 485,210 to 486,385 _02425 CSW01_02430: CSW01_02430 - non-canonical purine NTP pyrophosphatase, at 486,379 to 486,981 _02430 CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482 _02435 CSW01_02440: CSW01_02440 - YggU family protein, at 487,528 to 487,818 _02440 CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375 _02445 Position (kb) 486 487Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 485.393 kb on + strand, within CSW01_02425at 485.412 kb on - strand, within CSW01_02425at 485.489 kb on + strand, within CSW01_02425at 485.539 kb on - strand, within CSW01_02425at 485.586 kb on + strand, within CSW01_02425at 485.637 kb on - strand, within CSW01_02425at 485.671 kb on + strand, within CSW01_02425at 485.757 kb on + strand, within CSW01_02425at 485.784 kb on - strand, within CSW01_02425at 485.841 kb on + strand, within CSW01_02425at 485.952 kb on + strand, within CSW01_02425at 486.004 kb on - strand, within CSW01_02425at 486.024 kb on - strand, within CSW01_02425at 486.099 kb on + strand, within CSW01_02425at 486.166 kb on - strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.213 kb on + strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.221 kb on - strand, within CSW01_02425at 486.236 kb on - strand, within CSW01_02425at 486.272 kb on - strandat 486.348 kb on + strandat 486.425 kb on + strandat 486.469 kb on - strand, within CSW01_02430at 486.510 kb on - strand, within CSW01_02430at 486.517 kb on + strand, within CSW01_02430at 486.613 kb on + strand, within CSW01_02430at 486.621 kb on - strand, within CSW01_02430at 486.657 kb on - strand, within CSW01_02430at 486.738 kb on - strand, within CSW01_02430at 486.908 kb on - strand, within CSW01_02430at 486.987 kb on + strandat 487.028 kb on - strandat 487.048 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.099 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.197 kb on + strand, within CSW01_02435at 487.230 kb on + strand, within CSW01_02435at 487.268 kb on + strand, within CSW01_02435at 487.343 kb on - strand, within CSW01_02435at 487.353 kb on + strand, within CSW01_02435at 487.375 kb on + strand, within CSW01_02435at 487.420 kb on - strand, within CSW01_02435at 487.422 kb on + strand, within CSW01_02435at 487.441 kb on + strandat 487.620 kb on + strand, within CSW01_02440at 487.628 kb on - strand, within CSW01_02440at 487.636 kb on - strand, within CSW01_02440at 487.640 kb on + strand, within CSW01_02440at 487.719 kb on - strand, within CSW01_02440at 487.732 kb on - strand, within CSW01_02440at 487.769 kb on + strand, within CSW01_02440at 487.782 kb on + strand, within CSW01_02440at 487.796 kb on + strandat 487.797 kb on - strandat 487.797 kb on - strandat 487.801 kb on + strandat 487.824 kb on - strandat 487.832 kb on + strandat 487.837 kb on + strandat 487.837 kb on + strandat 487.845 kb on - strandat 487.887 kb on - strand, within CSW01_02445at 487.887 kb on - strand, within CSW01_02445at 487.898 kb on - strand, within CSW01_02445at 487.904 kb on + strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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485,393 + CSW01_02425 0.16 +1.5
485,412 - CSW01_02425 0.17 +0.5
485,489 + CSW01_02425 0.24 +1.6
485,539 - CSW01_02425 0.28 -0.0
485,586 + CSW01_02425 0.32 +0.5
485,637 - CSW01_02425 0.36 +1.7
485,671 + CSW01_02425 0.39 -0.6
485,757 + CSW01_02425 0.47 -0.3
485,784 - CSW01_02425 0.49 +0.2
485,841 + CSW01_02425 0.54 -0.2
485,952 + CSW01_02425 0.63 -0.4
486,004 - CSW01_02425 0.68 -0.1
486,024 - CSW01_02425 0.69 -0.1
486,099 + CSW01_02425 0.76 -0.3
486,166 - CSW01_02425 0.81 +0.2
486,213 + CSW01_02425 0.85 +1.5
486,213 + CSW01_02425 0.85 -0.4
486,213 + CSW01_02425 0.85 +0.9
486,213 + CSW01_02425 0.85 +0.4
486,221 - CSW01_02425 0.86 +0.1
486,221 - CSW01_02425 0.86 -0.1
486,221 - CSW01_02425 0.86 -0.8
486,221 - CSW01_02425 0.86 -1.8
486,221 - CSW01_02425 0.86 +0.4
486,236 - CSW01_02425 0.87 -1.3
486,272 - -0.9
486,348 + -1.0
486,425 + -0.4
486,469 - CSW01_02430 0.15 +1.4
486,510 - CSW01_02430 0.22 -1.3
486,517 + CSW01_02430 0.23 -0.0
486,613 + CSW01_02430 0.39 -1.0
486,621 - CSW01_02430 0.40 -3.5
486,657 - CSW01_02430 0.46 +1.1
486,738 - CSW01_02430 0.60 +0.8
486,908 - CSW01_02430 0.88 +0.3
486,987 + +0.3
487,028 - +0.0
487,048 + -0.5
487,061 + -1.0
487,061 + +0.6
487,061 + +0.4
487,061 + -1.1
487,061 + -0.9
487,061 + +0.0
487,069 - +0.2
487,069 - +0.2
487,069 - +0.3
487,099 + CSW01_02435 0.11 -0.1
487,129 + CSW01_02435 0.18 +0.4
487,129 + CSW01_02435 0.18 +0.2
487,187 + CSW01_02435 0.31 +0.6
487,187 + CSW01_02435 0.31 -0.4
487,197 + CSW01_02435 0.34 -0.1
487,230 + CSW01_02435 0.41 -0.8
487,268 + CSW01_02435 0.50 +0.2
487,343 - CSW01_02435 0.68 +0.7
487,353 + CSW01_02435 0.70 +0.0
487,375 + CSW01_02435 0.75 +1.0
487,420 - CSW01_02435 0.85 -0.6
487,422 + CSW01_02435 0.86 +0.1
487,441 + +0.4
487,620 + CSW01_02440 0.32 +0.3
487,628 - CSW01_02440 0.34 -0.1
487,636 - CSW01_02440 0.37 -0.8
487,640 + CSW01_02440 0.38 -0.1
487,719 - CSW01_02440 0.66 -1.0
487,732 - CSW01_02440 0.70 +1.4
487,769 + CSW01_02440 0.83 +1.1
487,782 + CSW01_02440 0.87 +0.2
487,796 + -0.8
487,797 - +0.9
487,797 - +0.3
487,801 + +0.9
487,824 - +0.0
487,832 + +3.0
487,837 + -0.8
487,837 + +0.3
487,845 - +1.3
487,887 - CSW01_02445 0.12 -0.1
487,887 - CSW01_02445 0.12 -0.2
487,898 - CSW01_02445 0.14 +0.4
487,904 + CSW01_02445 0.15 -0.6
487,912 - CSW01_02445 0.17 +1.0
487,912 - CSW01_02445 0.17 +0.2
487,912 - CSW01_02445 0.17 -0.1
487,912 - CSW01_02445 0.17 -0.4

Or see this region's nucleotide sequence