Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02125

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02120 and CSW01_02125 are separated by 4 nucleotidesCSW01_02125 and CSW01_02130 overlap by 22 nucleotides CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 CSW01_02125: CSW01_02125 - MSHA biogenesis protein MshM, at 428,132 to 428,977 _02125 CSW01_02130: CSW01_02130 - MSHA biogenesis protein MshN, at 428,956 to 430,125 _02130 Position (kb) 428 429Strain fitness (log2 ratio) -1 0 1 2at 427.162 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.195 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.196 kb on + strand, within CSW01_02120at 427.203 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.204 kb on - strand, within CSW01_02120at 427.318 kb on - strand, within CSW01_02120at 427.322 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.344 kb on + strand, within CSW01_02120at 427.345 kb on + strand, within CSW01_02120at 427.358 kb on + strand, within CSW01_02120at 427.392 kb on - strand, within CSW01_02120at 427.393 kb on - strand, within CSW01_02120at 427.399 kb on + strand, within CSW01_02120at 427.427 kb on + strand, within CSW01_02120at 427.442 kb on + strand, within CSW01_02120at 427.510 kb on - strand, within CSW01_02120at 427.541 kb on + strand, within CSW01_02120at 427.549 kb on + strand, within CSW01_02120at 427.612 kb on + strand, within CSW01_02120at 427.620 kb on - strand, within CSW01_02120at 427.652 kb on - strand, within CSW01_02120at 427.738 kb on + strand, within CSW01_02120at 427.748 kb on + strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.784 kb on - strand, within CSW01_02120at 427.892 kb on + strand, within CSW01_02120at 427.909 kb on + strand, within CSW01_02120at 427.920 kb on + strand, within CSW01_02120at 427.928 kb on - strand, within CSW01_02120at 427.936 kb on - strand, within CSW01_02120at 427.997 kb on + strandat 428.005 kb on - strandat 428.055 kb on + strandat 428.063 kb on - strandat 428.082 kb on - strandat 428.108 kb on - strandat 428.109 kb on - strandat 428.151 kb on + strandat 428.151 kb on + strandat 428.159 kb on - strandat 428.239 kb on - strand, within CSW01_02125at 428.279 kb on + strand, within CSW01_02125at 428.340 kb on + strand, within CSW01_02125at 428.364 kb on + strand, within CSW01_02125at 428.372 kb on - strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.416 kb on - strand, within CSW01_02125at 428.431 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on - strand, within CSW01_02125at 428.467 kb on + strand, within CSW01_02125at 428.505 kb on - strand, within CSW01_02125at 428.506 kb on + strand, within CSW01_02125at 428.511 kb on + strand, within CSW01_02125at 428.534 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.615 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.809 kb on - strand, within CSW01_02125at 428.846 kb on + strand, within CSW01_02125at 428.854 kb on - strand, within CSW01_02125at 428.923 kb on - strandat 428.923 kb on - strandat 428.923 kb on - strandat 428.970 kb on + strandat 428.997 kb on + strandat 429.060 kb on + strandat 429.081 kb on + strand, within CSW01_02130at 429.088 kb on - strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.118 kb on - strand, within CSW01_02130at 429.128 kb on + strand, within CSW01_02130at 429.129 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.157 kb on + strand, within CSW01_02130at 429.165 kb on - strand, within CSW01_02130at 429.207 kb on + strand, within CSW01_02130at 429.270 kb on + strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.361 kb on - strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.414 kb on + strand, within CSW01_02130at 429.415 kb on - strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.457 kb on - strand, within CSW01_02130at 429.464 kb on - strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.485 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.510 kb on - strand, within CSW01_02130at 429.512 kb on + strand, within CSW01_02130at 429.520 kb on - strand, within CSW01_02130at 429.535 kb on - strand, within CSW01_02130at 429.541 kb on - strand, within CSW01_02130at 429.556 kb on + strand, within CSW01_02130at 429.607 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.699 kb on - strand, within CSW01_02130at 429.715 kb on - strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.757 kb on - strand, within CSW01_02130at 429.791 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.864 kb on - strand, within CSW01_02130at 429.900 kb on - strand, within CSW01_02130

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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427,162 + CSW01_02120 0.42 -0.1
427,195 + CSW01_02120 0.44 +0.8
427,195 + CSW01_02120 0.44 -0.2
427,195 + CSW01_02120 0.44 +0.6
427,195 + CSW01_02120 0.44 +0.6
427,195 + CSW01_02120 0.44 +0.3
427,195 + CSW01_02120 0.44 +1.0
427,195 + CSW01_02120 0.44 +0.1
427,196 + CSW01_02120 0.45 +0.8
427,196 + CSW01_02120 0.45 +0.7
427,196 + CSW01_02120 0.45 +0.7
427,203 - CSW01_02120 0.45 +0.9
427,204 - CSW01_02120 0.45 +0.9
427,204 - CSW01_02120 0.45 -0.7
427,204 - CSW01_02120 0.45 +1.7
427,204 - CSW01_02120 0.45 +0.9
427,204 - CSW01_02120 0.45 -0.0
427,318 - CSW01_02120 0.52 +0.4
427,322 + CSW01_02120 0.52 +0.2
427,344 + CSW01_02120 0.53 +0.1
427,344 + CSW01_02120 0.53 +1.0
427,345 + CSW01_02120 0.53 +0.6
427,358 + CSW01_02120 0.54 +0.8
427,392 - CSW01_02120 0.56 +0.5
427,393 - CSW01_02120 0.56 +0.5
427,399 + CSW01_02120 0.57 +0.6
427,427 + CSW01_02120 0.58 +1.2
427,442 + CSW01_02120 0.59 +0.2
427,510 - CSW01_02120 0.63 +0.2
427,541 + CSW01_02120 0.65 +1.0
427,549 + CSW01_02120 0.66 +0.4
427,612 + CSW01_02120 0.69 +0.5
427,620 - CSW01_02120 0.70 +1.5
427,652 - CSW01_02120 0.72 +0.0
427,738 + CSW01_02120 0.77 +1.5
427,748 + CSW01_02120 0.77 +1.9
427,784 - CSW01_02120 0.80 +0.1
427,784 - CSW01_02120 0.80 +0.3
427,784 - CSW01_02120 0.80 +0.6
427,892 + CSW01_02120 0.86 +0.1
427,909 + CSW01_02120 0.87 +0.7
427,920 + CSW01_02120 0.88 +0.7
427,928 - CSW01_02120 0.88 -0.1
427,936 - CSW01_02120 0.89 -0.1
427,997 + +0.3
428,005 - +0.7
428,055 + +0.5
428,063 - +0.9
428,082 - +0.1
428,108 - +0.5
428,109 - +0.6
428,151 + +0.1
428,151 + +0.5
428,159 - +0.3
428,239 - CSW01_02125 0.13 +1.0
428,279 + CSW01_02125 0.17 +0.0
428,340 + CSW01_02125 0.25 +0.6
428,364 + CSW01_02125 0.27 -0.9
428,372 - CSW01_02125 0.28 +0.3
428,385 + CSW01_02125 0.30 +1.8
428,385 + CSW01_02125 0.30 +1.4
428,392 - CSW01_02125 0.31 +0.4
428,392 - CSW01_02125 0.31 +0.6
428,392 - CSW01_02125 0.31 +1.6
428,416 - CSW01_02125 0.34 +0.5
428,431 + CSW01_02125 0.35 +0.1
428,452 + CSW01_02125 0.38 +0.8
428,452 + CSW01_02125 0.38 +0.3
428,452 - CSW01_02125 0.38 +1.0
428,467 + CSW01_02125 0.40 +0.8
428,505 - CSW01_02125 0.44 -0.1
428,506 + CSW01_02125 0.44 +0.9
428,511 + CSW01_02125 0.45 +0.6
428,534 - CSW01_02125 0.48 +0.9
428,588 - CSW01_02125 0.54 +0.5
428,588 - CSW01_02125 0.54 +0.7
428,615 + CSW01_02125 0.57 -0.1
428,764 + CSW01_02125 0.75 +0.0
428,764 + CSW01_02125 0.75 +0.5
428,764 + CSW01_02125 0.75 -0.6
428,772 - CSW01_02125 0.76 +1.0
428,772 - CSW01_02125 0.76 +0.2
428,772 - CSW01_02125 0.76 +0.2
428,809 - CSW01_02125 0.80 +0.9
428,846 + CSW01_02125 0.84 +0.4
428,854 - CSW01_02125 0.85 +0.5
428,923 - +0.5
428,923 - +0.5
428,923 - +0.5
428,970 + +0.8
428,997 + +0.6
429,060 + +0.4
429,081 + CSW01_02130 0.11 +1.1
429,088 - CSW01_02130 0.11 +0.7
429,098 + CSW01_02130 0.12 +1.1
429,098 + CSW01_02130 0.12 +0.1
429,118 - CSW01_02130 0.14 +0.2
429,128 + CSW01_02130 0.15 +1.1
429,129 + CSW01_02130 0.15 +0.7
429,155 + CSW01_02130 0.17 +0.8
429,155 + CSW01_02130 0.17 -0.0
429,157 + CSW01_02130 0.17 +0.4
429,165 - CSW01_02130 0.18 +2.0
429,207 + CSW01_02130 0.21 +0.6
429,270 + CSW01_02130 0.27 +0.0
429,351 - CSW01_02130 0.34 +0.3
429,351 - CSW01_02130 0.34 +0.8
429,361 - CSW01_02130 0.35 +1.1
429,407 + CSW01_02130 0.39 +0.7
429,407 + CSW01_02130 0.39 +1.2
429,414 + CSW01_02130 0.39 -0.0
429,415 - CSW01_02130 0.39 +0.2
429,430 + CSW01_02130 0.41 +1.2
429,430 + CSW01_02130 0.41 +0.2
429,430 + CSW01_02130 0.41 +0.8
429,457 - CSW01_02130 0.43 +0.8
429,464 - CSW01_02130 0.43 +0.6
429,478 + CSW01_02130 0.45 +0.6
429,478 + CSW01_02130 0.45 +0.7
429,478 + CSW01_02130 0.45 -0.1
429,478 + CSW01_02130 0.45 +0.9
429,478 + CSW01_02130 0.45 -0.2
429,485 - CSW01_02130 0.45 +0.6
429,486 - CSW01_02130 0.45 -0.8
429,486 - CSW01_02130 0.45 +0.3
429,486 - CSW01_02130 0.45 +0.3
429,486 - CSW01_02130 0.45 +0.5
429,510 - CSW01_02130 0.47 +1.0
429,512 + CSW01_02130 0.48 +1.2
429,520 - CSW01_02130 0.48 +0.5
429,535 - CSW01_02130 0.49 +0.2
429,541 - CSW01_02130 0.50 +1.0
429,556 + CSW01_02130 0.51 +0.5
429,607 + CSW01_02130 0.56 +0.5
429,630 + CSW01_02130 0.58 +0.9
429,630 + CSW01_02130 0.58 +1.0
429,630 + CSW01_02130 0.58 +0.8
429,630 + CSW01_02130 0.58 +1.8
429,630 + CSW01_02130 0.58 +0.8
429,630 + CSW01_02130 0.58 +0.3
429,630 + CSW01_02130 0.58 +1.2
429,638 - CSW01_02130 0.58 +0.8
429,638 - CSW01_02130 0.58 +0.8
429,638 - CSW01_02130 0.58 +1.0
429,699 - CSW01_02130 0.64 +0.8
429,715 - CSW01_02130 0.65 -0.8
429,749 + CSW01_02130 0.68 +0.3
429,749 + CSW01_02130 0.68 +1.3
429,757 - CSW01_02130 0.68 -0.9
429,791 - CSW01_02130 0.71 +1.0
429,848 - CSW01_02130 0.76 +0.6
429,848 - CSW01_02130 0.76 +1.1
429,864 - CSW01_02130 0.78 +1.0
429,900 - CSW01_02130 0.81 +0.9

Or see this region's nucleotide sequence