Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01985

Experiment: LB_Anaerobic_180MIN_ZN16B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01975 and CSW01_01980 are separated by 9 nucleotidesCSW01_01980 and CSW01_01985 are separated by 354 nucleotidesCSW01_01985 and CSW01_01990 are separated by 160 nucleotidesCSW01_01990 and CSW01_01995 are separated by 88 nucleotides CSW01_01975: CSW01_01975 - chemotaxis protein CheX, at 391,777 to 392,238 _01975 CSW01_01980: CSW01_01980 - transcriptional regulator Zur, at 392,248 to 392,715 _01980 CSW01_01985: CSW01_01985 - tRNA dihydrouridine(20/20a) synthase DusA, at 393,070 to 394,053 _01985 CSW01_01990: CSW01_01990 - envelope stress response protein PspG, at 394,214 to 394,426 _01990 CSW01_01995: CSW01_01995 - iron-hydroxamate ABC transporter substrate-binding protein, at 394,515 to 395,180 _01995 Position (kb) 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.075 kb on - strand, within CSW01_01975at 392.101 kb on + strand, within CSW01_01975at 392.101 kb on + strand, within CSW01_01975at 392.109 kb on - strand, within CSW01_01975at 392.109 kb on - strand, within CSW01_01975at 392.248 kb on - strandat 392.283 kb on + strandat 392.309 kb on + strand, within CSW01_01980at 392.327 kb on - strand, within CSW01_01980at 392.329 kb on + strand, within CSW01_01980at 392.358 kb on + strand, within CSW01_01980at 392.390 kb on + strand, within CSW01_01980at 392.400 kb on + strand, within CSW01_01980at 392.408 kb on - strand, within CSW01_01980at 392.417 kb on + strand, within CSW01_01980at 392.423 kb on - strand, within CSW01_01980at 392.425 kb on + strand, within CSW01_01980at 392.433 kb on - strand, within CSW01_01980at 392.462 kb on - strand, within CSW01_01980at 392.524 kb on - strand, within CSW01_01980at 392.528 kb on + strand, within CSW01_01980at 392.528 kb on + strand, within CSW01_01980at 392.536 kb on - strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.583 kb on + strand, within CSW01_01980at 392.591 kb on - strand, within CSW01_01980at 392.593 kb on - strand, within CSW01_01980at 392.603 kb on + strand, within CSW01_01980at 392.624 kb on + strand, within CSW01_01980at 392.624 kb on + strand, within CSW01_01980at 392.703 kb on - strandat 392.703 kb on - strandat 392.717 kb on - strandat 392.723 kb on - strandat 392.821 kb on + strandat 392.901 kb on + strandat 392.902 kb on + strandat 392.902 kb on + strandat 392.910 kb on - strandat 392.971 kb on + strandat 392.974 kb on - strandat 393.108 kb on + strandat 393.108 kb on + strandat 393.154 kb on + strandat 393.154 kb on + strandat 393.163 kb on + strandat 393.163 kb on + strandat 393.165 kb on + strandat 393.165 kb on + strandat 393.171 kb on - strand, within CSW01_01985at 393.173 kb on - strand, within CSW01_01985at 393.173 kb on - strand, within CSW01_01985at 393.238 kb on - strand, within CSW01_01985at 393.293 kb on + strand, within CSW01_01985at 393.333 kb on + strand, within CSW01_01985at 393.586 kb on + strand, within CSW01_01985at 393.594 kb on - strand, within CSW01_01985at 393.690 kb on + strand, within CSW01_01985at 393.691 kb on + strand, within CSW01_01985at 393.696 kb on - strand, within CSW01_01985at 393.735 kb on - strand, within CSW01_01985at 393.835 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.914 kb on + strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.922 kb on - strand, within CSW01_01985at 393.966 kb on - strandat 393.976 kb on - strandat 393.995 kb on + strandat 394.003 kb on - strandat 394.193 kb on + strandat 394.211 kb on - strandat 394.274 kb on + strand, within CSW01_01990at 394.274 kb on + strand, within CSW01_01990at 394.282 kb on - strand, within CSW01_01990at 394.282 kb on - strand, within CSW01_01990at 394.291 kb on - strand, within CSW01_01990at 394.335 kb on - strand, within CSW01_01990at 394.346 kb on + strand, within CSW01_01990at 394.346 kb on + strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.354 kb on - strand, within CSW01_01990at 394.368 kb on - strand, within CSW01_01990at 394.416 kb on - strandat 394.432 kb on + strandat 394.455 kb on + strandat 394.504 kb on + strandat 394.512 kb on - strandat 394.544 kb on - strandat 394.549 kb on - strandat 394.589 kb on + strand, within CSW01_01995at 394.589 kb on + strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.597 kb on - strand, within CSW01_01995at 394.599 kb on + strand, within CSW01_01995at 394.607 kb on - strand, within CSW01_01995at 394.676 kb on + strand, within CSW01_01995at 394.677 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.730 kb on - strand, within CSW01_01995at 394.816 kb on + strand, within CSW01_01995at 394.824 kb on - strand, within CSW01_01995at 394.826 kb on + strand, within CSW01_01995at 394.834 kb on + strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995at 394.842 kb on - strand, within CSW01_01995

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B
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392,075 - CSW01_01975 0.65 +1.3
392,075 - CSW01_01975 0.65 -0.0
392,075 - CSW01_01975 0.65 +0.2
392,075 - CSW01_01975 0.65 +0.4
392,075 - CSW01_01975 0.65 +1.1
392,075 - CSW01_01975 0.65 -0.9
392,075 - CSW01_01975 0.65 +0.4
392,075 - CSW01_01975 0.65 +0.5
392,075 - CSW01_01975 0.65 +0.7
392,075 - CSW01_01975 0.65 +0.5
392,075 - CSW01_01975 0.65 +0.7
392,075 - CSW01_01975 0.65 +0.1
392,075 - CSW01_01975 0.65 +1.7
392,101 + CSW01_01975 0.70 +0.6
392,101 + CSW01_01975 0.70 +0.2
392,109 - CSW01_01975 0.72 +1.0
392,109 - CSW01_01975 0.72 -0.1
392,248 - -0.2
392,283 + +0.7
392,309 + CSW01_01980 0.13 +0.6
392,327 - CSW01_01980 0.17 +1.1
392,329 + CSW01_01980 0.17 -0.2
392,358 + CSW01_01980 0.24 -1.8
392,390 + CSW01_01980 0.30 +1.5
392,400 + CSW01_01980 0.32 -0.3
392,408 - CSW01_01980 0.34 -0.0
392,417 + CSW01_01980 0.36 +1.3
392,423 - CSW01_01980 0.37 -0.1
392,425 + CSW01_01980 0.38 +0.8
392,433 - CSW01_01980 0.40 -0.4
392,462 - CSW01_01980 0.46 +0.0
392,524 - CSW01_01980 0.59 +0.9
392,528 + CSW01_01980 0.60 +0.7
392,528 + CSW01_01980 0.60 -0.0
392,536 - CSW01_01980 0.62 -0.2
392,583 + CSW01_01980 0.72 +0.5
392,583 + CSW01_01980 0.72 -0.3
392,583 + CSW01_01980 0.72 +0.3
392,591 - CSW01_01980 0.73 +0.3
392,593 - CSW01_01980 0.74 +0.0
392,603 + CSW01_01980 0.76 +1.6
392,624 + CSW01_01980 0.80 +0.5
392,624 + CSW01_01980 0.80 +0.8
392,703 - -0.0
392,703 - -0.3
392,717 - +0.9
392,723 - -0.5
392,821 + +2.5
392,901 + -0.8
392,902 + +0.5
392,902 + -1.0
392,910 - +0.3
392,971 + -0.6
392,974 - +0.6
393,108 + +0.1
393,108 + -0.8
393,154 + +1.8
393,154 + +0.9
393,163 + -0.9
393,163 + +0.2
393,165 + +0.7
393,165 + +0.7
393,171 - CSW01_01985 0.10 -0.5
393,173 - CSW01_01985 0.10 +0.6
393,173 - CSW01_01985 0.10 +0.4
393,238 - CSW01_01985 0.17 -0.0
393,293 + CSW01_01985 0.23 -0.1
393,333 + CSW01_01985 0.27 +2.7
393,586 + CSW01_01985 0.52 +0.4
393,594 - CSW01_01985 0.53 +1.0
393,690 + CSW01_01985 0.63 +0.9
393,691 + CSW01_01985 0.63 +0.4
393,696 - CSW01_01985 0.64 +0.4
393,735 - CSW01_01985 0.68 +0.1
393,835 + CSW01_01985 0.78 +0.2
393,914 + CSW01_01985 0.86 -0.2
393,914 + CSW01_01985 0.86 +0.1
393,914 + CSW01_01985 0.86 +1.0
393,922 - CSW01_01985 0.87 -0.3
393,922 - CSW01_01985 0.87 +0.1
393,922 - CSW01_01985 0.87 -0.6
393,966 - +0.1
393,976 - +0.4
393,995 + +0.4
394,003 - +0.6
394,193 + +1.1
394,211 - +0.3
394,274 + CSW01_01990 0.28 +0.9
394,274 + CSW01_01990 0.28 +0.1
394,282 - CSW01_01990 0.32 -0.6
394,282 - CSW01_01990 0.32 +0.9
394,291 - CSW01_01990 0.36 +0.7
394,335 - CSW01_01990 0.57 +0.7
394,346 + CSW01_01990 0.62 +0.1
394,346 + CSW01_01990 0.62 -0.2
394,354 - CSW01_01990 0.66 +0.1
394,354 - CSW01_01990 0.66 +0.3
394,354 - CSW01_01990 0.66 +0.2
394,354 - CSW01_01990 0.66 +0.9
394,368 - CSW01_01990 0.72 +0.3
394,416 - +0.2
394,432 + +0.3
394,455 + +0.5
394,504 + -0.1
394,512 - -0.1
394,544 - +0.2
394,549 - -0.4
394,589 + CSW01_01995 0.11 -0.3
394,589 + CSW01_01995 0.11 +1.0
394,597 - CSW01_01995 0.12 -0.9
394,597 - CSW01_01995 0.12 +0.2
394,597 - CSW01_01995 0.12 +0.6
394,597 - CSW01_01995 0.12 -0.3
394,599 + CSW01_01995 0.13 -1.6
394,607 - CSW01_01995 0.14 +1.6
394,676 + CSW01_01995 0.24 +0.4
394,677 - CSW01_01995 0.24 -0.6
394,730 - CSW01_01995 0.32 +0.1
394,730 - CSW01_01995 0.32 -0.2
394,816 + CSW01_01995 0.45 +1.8
394,824 - CSW01_01995 0.46 +0.1
394,826 + CSW01_01995 0.47 -0.9
394,834 + CSW01_01995 0.48 -0.3
394,842 - CSW01_01995 0.49 -2.9
394,842 - CSW01_01995 0.49 -0.5

Or see this region's nucleotide sequence