Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01880 and CSW01_01885 overlap by 4 nucleotides CSW01_01885 and CSW01_01890 are separated by 9 nucleotides CSW01_01890 and CSW01_01895 are separated by 184 nucleotides CSW01_01895 and CSW01_01900 are separated by 115 nucleotides CSW01_01900 and CSW01_01905 are separated by 75 nucleotides
CSW01_01880: CSW01_01880 - sulfurtransferase TusD, at 376,028 to 376,423
_01880
CSW01_01885: CSW01_01885 - sulfurtransferase TusC, at 376,420 to 376,776
_01885
CSW01_01890: CSW01_01890 - sulfurtransferase complex subunit TusB, at 376,786 to 377,061
_01890
CSW01_01895: CSW01_01895 - 30S ribosomal protein S12, at 377,246 to 377,620
_01895
CSW01_01900: CSW01_01900 - 30S ribosomal protein S7, at 377,736 to 378,206
_01900
CSW01_01905: CSW01_01905 - elongation factor G, at 378,282 to 380,378
_01905
Position (kb) 377
378 Strain fitness (log2 ratio) -1
0
1
2 at 377.079 kb on + strand at 377.079 kb on + strand at 377.079 kb on + strand at 377.079 kb on + strand at 377.087 kb on - strand at 377.087 kb on - strand at 377.087 kb on - strand at 377.089 kb on + strand at 377.092 kb on - strand at 377.097 kb on - strand at 377.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 377,079 + +0.7 377,079 + +1.8 377,079 + +0.9 377,079 + -0.2 377,087 - +0.0 377,087 - -0.0 377,087 - -0.1 377,089 + -0.1 377,092 - +0.0 377,097 - +0.4 377,598 + -0.0
Or see this region's nucleotide sequence