Experiment: LB_Anaerobic_180MIN_ZN16B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00500 and CSW01_00505 are separated by 75 nucleotides CSW01_00505 and CSW01_00510 are separated by 0 nucleotides CSW01_00510 and CSW01_00515 are separated by 22 nucleotides CSW01_00515 and CSW01_00520 are separated by 70 nucleotides
CSW01_00500: CSW01_00500 - glycerol-3-phosphate 1-O-acyltransferase, at 90,963 to 93,389
_00500
CSW01_00505: CSW01_00505 - 4-hydroxybenzoate octaprenyltransferase, at 93,465 to 94,319
_00505
CSW01_00510: CSW01_00510 - chorismate lyase, at 94,320 to 94,871
_00510
CSW01_00515: CSW01_00515 - hypothetical protein, at 94,894 to 94,992
_00515
CSW01_00520: CSW01_00520 - flagellar basal body-associated protein FliL, at 95,063 to 95,473
_00520
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.465 kb on - strand, within CSW01_00500 at 92.467 kb on + strand, within CSW01_00500 at 92.475 kb on - strand, within CSW01_00500 at 92.475 kb on - strand, within CSW01_00500 at 92.492 kb on + strand, within CSW01_00500 at 92.492 kb on + strand, within CSW01_00500 at 92.507 kb on + strand, within CSW01_00500 at 92.507 kb on + strand, within CSW01_00500 at 92.507 kb on + strand, within CSW01_00500 at 92.515 kb on - strand, within CSW01_00500 at 92.515 kb on - strand, within CSW01_00500 at 92.617 kb on + strand, within CSW01_00500 at 92.625 kb on + strand, within CSW01_00500 at 92.653 kb on + strand, within CSW01_00500 at 92.661 kb on - strand, within CSW01_00500 at 92.661 kb on - strand, within CSW01_00500 at 92.661 kb on - strand, within CSW01_00500 at 92.684 kb on + strand, within CSW01_00500 at 92.722 kb on - strand, within CSW01_00500 at 92.802 kb on + strand, within CSW01_00500 at 92.805 kb on - strand, within CSW01_00500 at 92.845 kb on - strand, within CSW01_00500 at 92.857 kb on + strand, within CSW01_00500 at 92.873 kb on + strand, within CSW01_00500 at 92.894 kb on + strand, within CSW01_00500 at 92.902 kb on - strand, within CSW01_00500 at 92.902 kb on - strand, within CSW01_00500 at 92.938 kb on - strand, within CSW01_00500 at 92.953 kb on + strand, within CSW01_00500 at 92.953 kb on + strand, within CSW01_00500 at 92.963 kb on + strand, within CSW01_00500 at 92.963 kb on + strand, within CSW01_00500 at 92.963 kb on + strand, within CSW01_00500 at 92.971 kb on - strand, within CSW01_00500 at 92.971 kb on - strand, within CSW01_00500 at 92.971 kb on - strand, within CSW01_00500 at 92.999 kb on - strand, within CSW01_00500 at 93.003 kb on + strand, within CSW01_00500 at 93.024 kb on - strand, within CSW01_00500 at 93.031 kb on - strand, within CSW01_00500 at 93.040 kb on + strand, within CSW01_00500 at 93.065 kb on + strand, within CSW01_00500 at 93.094 kb on - strand, within CSW01_00500 at 93.108 kb on - strand, within CSW01_00500 at 93.126 kb on + strand, within CSW01_00500 at 93.129 kb on - strand, within CSW01_00500 at 93.131 kb on + strand, within CSW01_00500 at 93.134 kb on - strand, within CSW01_00500 at 93.134 kb on - strand, within CSW01_00500 at 93.134 kb on - strand, within CSW01_00500 at 93.147 kb on + strand at 93.173 kb on + strand at 93.193 kb on + strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.201 kb on - strand at 93.239 kb on + strand at 93.239 kb on + strand at 93.247 kb on - strand at 93.273 kb on + strand at 93.273 kb on + strand at 93.290 kb on + strand at 93.292 kb on - strand at 93.313 kb on + strand at 93.313 kb on + strand at 93.328 kb on - strand at 93.332 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.337 kb on + strand at 93.340 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.345 kb on - strand at 93.367 kb on + strand at 93.405 kb on - strand at 93.405 kb on - strand at 93.467 kb on + strand at 93.485 kb on - strand at 94.325 kb on - strand at 94.336 kb on + strand at 94.339 kb on - strand at 94.389 kb on - strand, within CSW01_00510 at 94.413 kb on + strand, within CSW01_00510 at 94.413 kb on + strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.435 kb on + strand, within CSW01_00510 at 94.471 kb on + strand, within CSW01_00510 at 94.488 kb on - strand, within CSW01_00510 at 94.498 kb on - strand, within CSW01_00510 at 94.567 kb on - strand, within CSW01_00510 at 94.568 kb on - strand, within CSW01_00510 at 94.568 kb on - strand, within CSW01_00510 at 94.614 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.631 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.659 kb on + strand, within CSW01_00510 at 94.674 kb on - strand, within CSW01_00510 at 94.720 kb on - strand, within CSW01_00510 at 94.767 kb on - strand, within CSW01_00510 at 94.821 kb on + strand at 94.829 kb on - strand at 94.839 kb on - strand at 94.891 kb on + strand at 94.960 kb on - strand, within CSW01_00515 at 95.071 kb on + strand at 95.212 kb on + strand, within CSW01_00520 at 95.249 kb on - strand, within CSW01_00520 at 95.267 kb on - strand, within CSW01_00520 at 95.292 kb on - strand, within CSW01_00520 at 95.292 kb on - strand, within CSW01_00520 at 95.310 kb on + strand, within CSW01_00520
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16B remove 92,465 - CSW01_00500 0.62 -0.5 92,467 + CSW01_00500 0.62 -1.8 92,475 - CSW01_00500 0.62 +0.4 92,475 - CSW01_00500 0.62 -1.0 92,492 + CSW01_00500 0.63 +0.6 92,492 + CSW01_00500 0.63 -1.0 92,507 + CSW01_00500 0.64 +0.5 92,507 + CSW01_00500 0.64 +0.3 92,507 + CSW01_00500 0.64 +0.5 92,515 - CSW01_00500 0.64 +0.9 92,515 - CSW01_00500 0.64 +0.3 92,617 + CSW01_00500 0.68 -0.1 92,625 + CSW01_00500 0.68 +1.0 92,653 + CSW01_00500 0.70 +0.8 92,661 - CSW01_00500 0.70 +0.5 92,661 - CSW01_00500 0.70 +0.1 92,661 - CSW01_00500 0.70 -0.7 92,684 + CSW01_00500 0.71 -0.2 92,722 - CSW01_00500 0.72 -0.3 92,802 + CSW01_00500 0.76 +0.5 92,805 - CSW01_00500 0.76 -0.3 92,845 - CSW01_00500 0.78 +1.0 92,857 + CSW01_00500 0.78 +0.3 92,873 + CSW01_00500 0.79 -0.1 92,894 + CSW01_00500 0.80 +0.3 92,902 - CSW01_00500 0.80 +0.2 92,902 - CSW01_00500 0.80 -0.2 92,938 - CSW01_00500 0.81 +0.8 92,953 + CSW01_00500 0.82 -0.5 92,953 + CSW01_00500 0.82 -0.2 92,963 + CSW01_00500 0.82 +0.0 92,963 + CSW01_00500 0.82 -0.9 92,963 + CSW01_00500 0.82 +0.7 92,971 - CSW01_00500 0.83 +0.3 92,971 - CSW01_00500 0.83 +0.3 92,971 - CSW01_00500 0.83 +0.6 92,999 - CSW01_00500 0.84 +0.4 93,003 + CSW01_00500 0.84 -0.3 93,024 - CSW01_00500 0.85 -0.5 93,031 - CSW01_00500 0.85 +0.2 93,040 + CSW01_00500 0.86 +0.2 93,065 + CSW01_00500 0.87 +0.3 93,094 - CSW01_00500 0.88 -0.9 93,108 - CSW01_00500 0.88 -0.2 93,126 + CSW01_00500 0.89 +0.5 93,129 - CSW01_00500 0.89 -0.0 93,131 + CSW01_00500 0.89 +0.4 93,134 - CSW01_00500 0.89 +0.2 93,134 - CSW01_00500 0.89 -0.5 93,134 - CSW01_00500 0.89 -0.2 93,147 + -0.2 93,173 + +1.2 93,193 + +0.0 93,201 - +0.2 93,201 - +0.1 93,201 - -0.6 93,201 - +0.1 93,201 - -0.4 93,201 - -0.5 93,201 - +0.5 93,239 + +0.3 93,239 + +0.3 93,247 - +0.9 93,273 + +1.8 93,273 + +0.2 93,290 + +1.2 93,292 - +0.2 93,313 + -0.5 93,313 + +0.1 93,328 - -0.3 93,332 + +0.1 93,337 + -1.8 93,337 + +0.7 93,337 + +0.2 93,337 + -1.6 93,337 + +0.2 93,337 + +0.3 93,337 + +0.5 93,337 + -0.2 93,340 - -0.8 93,345 - -0.1 93,345 - -2.5 93,345 - -0.0 93,345 - +0.4 93,345 - -0.0 93,345 - +1.5 93,345 - +0.1 93,345 - -0.4 93,367 + -0.6 93,405 - -0.2 93,405 - +0.0 93,467 + -0.5 93,485 - -0.0 94,325 - +0.1 94,336 + -1.0 94,339 - +1.0 94,389 - CSW01_00510 0.12 -1.5 94,413 + CSW01_00510 0.17 +1.1 94,413 + CSW01_00510 0.17 +0.5 94,421 - CSW01_00510 0.18 -0.7 94,421 - CSW01_00510 0.18 +0.1 94,421 - CSW01_00510 0.18 +1.1 94,435 + CSW01_00510 0.21 -1.3 94,471 + CSW01_00510 0.27 +0.8 94,488 - CSW01_00510 0.30 +0.2 94,498 - CSW01_00510 0.32 +0.8 94,567 - CSW01_00510 0.45 -0.1 94,568 - CSW01_00510 0.45 -0.1 94,568 - CSW01_00510 0.45 +0.0 94,614 + CSW01_00510 0.53 +0.2 94,628 + CSW01_00510 0.56 +0.1 94,628 + CSW01_00510 0.56 +1.5 94,628 + CSW01_00510 0.56 -0.7 94,628 + CSW01_00510 0.56 -0.5 94,631 - CSW01_00510 0.56 +0.7 94,636 - CSW01_00510 0.57 +0.5 94,636 - CSW01_00510 0.57 +0.7 94,636 - CSW01_00510 0.57 +0.5 94,636 - CSW01_00510 0.57 +0.4 94,636 - CSW01_00510 0.57 +0.3 94,636 - CSW01_00510 0.57 -0.5 94,659 + CSW01_00510 0.61 +0.3 94,674 - CSW01_00510 0.64 +0.3 94,720 - CSW01_00510 0.72 -0.5 94,767 - CSW01_00510 0.81 -0.5 94,821 + -0.6 94,829 - +0.6 94,839 - +0.4 94,891 + +0.6 94,960 - CSW01_00515 0.67 +0.6 95,071 + -1.1 95,212 + CSW01_00520 0.36 +0.5 95,249 - CSW01_00520 0.45 +0.4 95,267 - CSW01_00520 0.50 +0.1 95,292 - CSW01_00520 0.56 +1.7 95,292 - CSW01_00520 0.56 +0.4 95,310 + CSW01_00520 0.60 +0.9
Or see this region's nucleotide sequence