Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26990 and AO356_26995 overlap by 4 nucleotides AO356_26995 and AO356_27000 are separated by 223 nucleotides AO356_27000 and AO356_27005 are separated by 127 nucleotides
AO356_26990: AO356_26990 - ATP-dependent DNA helicase, at 6,146,138 to 6,148,480
_26990
AO356_26995: AO356_26995 - DNA damage response nuclease (from data) , at 6,148,477 to 6,150,207
_26995
AO356_27000: AO356_27000 - hypothetical protein, at 6,150,431 to 6,150,655
_27000
AO356_27005: AO356_27005 - polyurethanase, at 6,150,783 to 6,152,636
_27005
Position (kb)
6148
6149
6150
6151 Strain fitness (log2 ratio)
-1
0
1
2 at 6147.765 kb on + strand, within AO356_26990 at 6147.765 kb on + strand, within AO356_26990 at 6148.098 kb on + strand, within AO356_26990 at 6148.098 kb on + strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.099 kb on - strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.155 kb on + strand, within AO356_26990 at 6148.156 kb on - strand, within AO356_26990 at 6148.221 kb on + strand, within AO356_26990 at 6148.511 kb on + strand at 6148.511 kb on + strand at 6148.511 kb on + strand at 6148.512 kb on - strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.583 kb on + strand at 6148.584 kb on - strand at 6148.686 kb on - strand, within AO356_26995 at 6149.087 kb on + strand, within AO356_26995 at 6149.087 kb on + strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.088 kb on - strand, within AO356_26995 at 6149.133 kb on - strand, within AO356_26995 at 6149.327 kb on + strand, within AO356_26995 at 6149.393 kb on + strand, within AO356_26995 at 6149.393 kb on + strand, within AO356_26995 at 6149.394 kb on - strand, within AO356_26995 at 6149.520 kb on + strand, within AO356_26995 at 6149.521 kb on - strand, within AO356_26995 at 6149.639 kb on + strand, within AO356_26995 at 6149.747 kb on + strand, within AO356_26995 at 6149.779 kb on - strand, within AO356_26995 at 6149.779 kb on - strand, within AO356_26995 at 6149.872 kb on + strand, within AO356_26995 at 6149.872 kb on + strand, within AO356_26995 at 6149.872 kb on + strand, within AO356_26995 at 6149.873 kb on - strand, within AO356_26995 at 6149.873 kb on - strand, within AO356_26995 at 6149.873 kb on - strand, within AO356_26995 at 6149.873 kb on - strand, within AO356_26995 at 6149.956 kb on + strand, within AO356_26995 at 6150.010 kb on - strand, within AO356_26995 at 6150.173 kb on + strand at 6150.173 kb on + strand at 6150.174 kb on - strand at 6150.174 kb on - strand at 6150.174 kb on - strand at 6150.177 kb on - strand at 6150.249 kb on - strand at 6150.263 kb on + strand at 6150.264 kb on - strand at 6150.264 kb on - strand at 6150.264 kb on - strand at 6150.301 kb on + strand at 6150.302 kb on - strand at 6150.303 kb on + strand at 6150.303 kb on + strand at 6150.304 kb on - strand at 6150.307 kb on + strand at 6150.326 kb on + strand at 6150.475 kb on + strand, within AO356_27000 at 6150.475 kb on + strand, within AO356_27000 at 6150.475 kb on + strand, within AO356_27000 at 6150.475 kb on + strand, within AO356_27000 at 6150.476 kb on - strand, within AO356_27000 at 6150.476 kb on - strand, within AO356_27000 at 6150.476 kb on - strand, within AO356_27000 at 6150.476 kb on - strand, within AO356_27000 at 6150.476 kb on - strand, within AO356_27000 at 6150.533 kb on + strand, within AO356_27000 at 6150.592 kb on + strand, within AO356_27000 at 6150.737 kb on - strand at 6150.974 kb on + strand, within AO356_27005 at 6151.014 kb on - strand, within AO356_27005 at 6151.177 kb on + strand, within AO356_27005 at 6151.178 kb on - strand, within AO356_27005
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 6,147,765 + AO356_26990 0.69 +0.1 6,147,765 + AO356_26990 0.69 -0.3 6,148,098 + AO356_26990 0.84 +0.1 6,148,098 + AO356_26990 0.84 +1.5 6,148,099 - AO356_26990 0.84 -0.9 6,148,099 - AO356_26990 0.84 -1.1 6,148,099 - AO356_26990 0.84 -0.9 6,148,155 + AO356_26990 0.86 -0.2 6,148,155 + AO356_26990 0.86 +0.9 6,148,155 + AO356_26990 0.86 +2.5 6,148,156 - AO356_26990 0.86 +0.4 6,148,221 + AO356_26990 0.89 -0.1 6,148,511 + +0.2 6,148,511 + -0.1 6,148,511 + +0.2 6,148,512 - +0.5 6,148,583 + +0.9 6,148,583 + -0.2 6,148,583 + -0.1 6,148,583 + -0.3 6,148,584 - -0.2 6,148,686 - AO356_26995 0.12 -0.3 6,149,087 + AO356_26995 0.35 +0.2 6,149,087 + AO356_26995 0.35 -0.1 6,149,088 - AO356_26995 0.35 +0.7 6,149,088 - AO356_26995 0.35 +0.3 6,149,088 - AO356_26995 0.35 +0.3 6,149,088 - AO356_26995 0.35 +0.7 6,149,133 - AO356_26995 0.38 +0.1 6,149,327 + AO356_26995 0.49 +0.1 6,149,393 + AO356_26995 0.53 -0.6 6,149,393 + AO356_26995 0.53 -0.1 6,149,394 - AO356_26995 0.53 +0.1 6,149,520 + AO356_26995 0.60 +0.2 6,149,521 - AO356_26995 0.60 +1.3 6,149,639 + AO356_26995 0.67 +0.6 6,149,747 + AO356_26995 0.73 +0.3 6,149,779 - AO356_26995 0.75 +0.9 6,149,779 - AO356_26995 0.75 +0.6 6,149,872 + AO356_26995 0.81 +2.0 6,149,872 + AO356_26995 0.81 +0.5 6,149,872 + AO356_26995 0.81 -1.4 6,149,873 - AO356_26995 0.81 +1.7 6,149,873 - AO356_26995 0.81 -0.3 6,149,873 - AO356_26995 0.81 +0.1 6,149,873 - AO356_26995 0.81 -0.6 6,149,956 + AO356_26995 0.85 +1.9 6,150,010 - AO356_26995 0.89 +0.5 6,150,173 + +0.5 6,150,173 + +0.8 6,150,174 - +0.6 6,150,174 - +0.1 6,150,174 - +0.2 6,150,177 - -0.2 6,150,249 - +0.0 6,150,263 + +0.9 6,150,264 - +0.2 6,150,264 - -0.2 6,150,264 - +0.1 6,150,301 + +0.3 6,150,302 - -1.0 6,150,303 + -0.5 6,150,303 + -0.3 6,150,304 - -0.9 6,150,307 + +0.7 6,150,326 + -0.3 6,150,475 + AO356_27000 0.20 +1.4 6,150,475 + AO356_27000 0.20 +1.0 6,150,475 + AO356_27000 0.20 +0.5 6,150,475 + AO356_27000 0.20 +0.5 6,150,476 - AO356_27000 0.20 -0.4 6,150,476 - AO356_27000 0.20 +0.9 6,150,476 - AO356_27000 0.20 -1.1 6,150,476 - AO356_27000 0.20 +0.7 6,150,476 - AO356_27000 0.20 -0.2 6,150,533 + AO356_27000 0.45 +0.5 6,150,592 + AO356_27000 0.72 -0.9 6,150,737 - -0.4 6,150,974 + AO356_27005 0.10 +0.5 6,151,014 - AO356_27005 0.12 -1.2 6,151,177 + AO356_27005 0.21 +0.2 6,151,178 - AO356_27005 0.21 +2.2
Or see this region's nucleotide sequence