Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26995

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26990 and AO356_26995 overlap by 4 nucleotidesAO356_26995 and AO356_27000 are separated by 223 nucleotidesAO356_27000 and AO356_27005 are separated by 127 nucleotides AO356_26990: AO356_26990 - ATP-dependent DNA helicase, at 6,146,138 to 6,148,480 _26990 AO356_26995: AO356_26995 - DNA damage response nuclease (from data), at 6,148,477 to 6,150,207 _26995 AO356_27000: AO356_27000 - hypothetical protein, at 6,150,431 to 6,150,655 _27000 AO356_27005: AO356_27005 - polyurethanase, at 6,150,783 to 6,152,636 _27005 Position (kb) 6148 6149 6150 6151Strain fitness (log2 ratio) -1 0 1 2at 6147.765 kb on + strand, within AO356_26990at 6147.765 kb on + strand, within AO356_26990at 6148.098 kb on + strand, within AO356_26990at 6148.098 kb on + strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.099 kb on - strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.155 kb on + strand, within AO356_26990at 6148.156 kb on - strand, within AO356_26990at 6148.221 kb on + strand, within AO356_26990at 6148.511 kb on + strandat 6148.511 kb on + strandat 6148.511 kb on + strandat 6148.512 kb on - strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.583 kb on + strandat 6148.584 kb on - strandat 6148.686 kb on - strand, within AO356_26995at 6149.087 kb on + strand, within AO356_26995at 6149.087 kb on + strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.088 kb on - strand, within AO356_26995at 6149.133 kb on - strand, within AO356_26995at 6149.327 kb on + strand, within AO356_26995at 6149.393 kb on + strand, within AO356_26995at 6149.393 kb on + strand, within AO356_26995at 6149.394 kb on - strand, within AO356_26995at 6149.520 kb on + strand, within AO356_26995at 6149.521 kb on - strand, within AO356_26995at 6149.639 kb on + strand, within AO356_26995at 6149.747 kb on + strand, within AO356_26995at 6149.779 kb on - strand, within AO356_26995at 6149.779 kb on - strand, within AO356_26995at 6149.872 kb on + strand, within AO356_26995at 6149.872 kb on + strand, within AO356_26995at 6149.872 kb on + strand, within AO356_26995at 6149.873 kb on - strand, within AO356_26995at 6149.873 kb on - strand, within AO356_26995at 6149.873 kb on - strand, within AO356_26995at 6149.873 kb on - strand, within AO356_26995at 6149.956 kb on + strand, within AO356_26995at 6150.010 kb on - strand, within AO356_26995at 6150.173 kb on + strandat 6150.173 kb on + strandat 6150.174 kb on - strandat 6150.174 kb on - strandat 6150.174 kb on - strandat 6150.177 kb on - strandat 6150.249 kb on - strandat 6150.263 kb on + strandat 6150.264 kb on - strandat 6150.264 kb on - strandat 6150.264 kb on - strandat 6150.301 kb on + strandat 6150.302 kb on - strandat 6150.303 kb on + strandat 6150.303 kb on + strandat 6150.304 kb on - strandat 6150.307 kb on + strandat 6150.326 kb on + strandat 6150.475 kb on + strand, within AO356_27000at 6150.475 kb on + strand, within AO356_27000at 6150.475 kb on + strand, within AO356_27000at 6150.475 kb on + strand, within AO356_27000at 6150.476 kb on - strand, within AO356_27000at 6150.476 kb on - strand, within AO356_27000at 6150.476 kb on - strand, within AO356_27000at 6150.476 kb on - strand, within AO356_27000at 6150.476 kb on - strand, within AO356_27000at 6150.533 kb on + strand, within AO356_27000at 6150.592 kb on + strand, within AO356_27000at 6150.737 kb on - strandat 6150.974 kb on + strand, within AO356_27005at 6151.014 kb on - strand, within AO356_27005at 6151.177 kb on + strand, within AO356_27005at 6151.178 kb on - strand, within AO356_27005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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6,147,765 + AO356_26990 0.69 +0.1
6,147,765 + AO356_26990 0.69 -0.3
6,148,098 + AO356_26990 0.84 +0.1
6,148,098 + AO356_26990 0.84 +1.5
6,148,099 - AO356_26990 0.84 -0.9
6,148,099 - AO356_26990 0.84 -1.1
6,148,099 - AO356_26990 0.84 -0.9
6,148,155 + AO356_26990 0.86 -0.2
6,148,155 + AO356_26990 0.86 +0.9
6,148,155 + AO356_26990 0.86 +2.5
6,148,156 - AO356_26990 0.86 +0.4
6,148,221 + AO356_26990 0.89 -0.1
6,148,511 + +0.2
6,148,511 + -0.1
6,148,511 + +0.2
6,148,512 - +0.5
6,148,583 + +0.9
6,148,583 + -0.2
6,148,583 + -0.1
6,148,583 + -0.3
6,148,584 - -0.2
6,148,686 - AO356_26995 0.12 -0.3
6,149,087 + AO356_26995 0.35 +0.2
6,149,087 + AO356_26995 0.35 -0.1
6,149,088 - AO356_26995 0.35 +0.7
6,149,088 - AO356_26995 0.35 +0.3
6,149,088 - AO356_26995 0.35 +0.3
6,149,088 - AO356_26995 0.35 +0.7
6,149,133 - AO356_26995 0.38 +0.1
6,149,327 + AO356_26995 0.49 +0.1
6,149,393 + AO356_26995 0.53 -0.6
6,149,393 + AO356_26995 0.53 -0.1
6,149,394 - AO356_26995 0.53 +0.1
6,149,520 + AO356_26995 0.60 +0.2
6,149,521 - AO356_26995 0.60 +1.3
6,149,639 + AO356_26995 0.67 +0.6
6,149,747 + AO356_26995 0.73 +0.3
6,149,779 - AO356_26995 0.75 +0.9
6,149,779 - AO356_26995 0.75 +0.6
6,149,872 + AO356_26995 0.81 +2.0
6,149,872 + AO356_26995 0.81 +0.5
6,149,872 + AO356_26995 0.81 -1.4
6,149,873 - AO356_26995 0.81 +1.7
6,149,873 - AO356_26995 0.81 -0.3
6,149,873 - AO356_26995 0.81 +0.1
6,149,873 - AO356_26995 0.81 -0.6
6,149,956 + AO356_26995 0.85 +1.9
6,150,010 - AO356_26995 0.89 +0.5
6,150,173 + +0.5
6,150,173 + +0.8
6,150,174 - +0.6
6,150,174 - +0.1
6,150,174 - +0.2
6,150,177 - -0.2
6,150,249 - +0.0
6,150,263 + +0.9
6,150,264 - +0.2
6,150,264 - -0.2
6,150,264 - +0.1
6,150,301 + +0.3
6,150,302 - -1.0
6,150,303 + -0.5
6,150,303 + -0.3
6,150,304 - -0.9
6,150,307 + +0.7
6,150,326 + -0.3
6,150,475 + AO356_27000 0.20 +1.4
6,150,475 + AO356_27000 0.20 +1.0
6,150,475 + AO356_27000 0.20 +0.5
6,150,475 + AO356_27000 0.20 +0.5
6,150,476 - AO356_27000 0.20 -0.4
6,150,476 - AO356_27000 0.20 +0.9
6,150,476 - AO356_27000 0.20 -1.1
6,150,476 - AO356_27000 0.20 +0.7
6,150,476 - AO356_27000 0.20 -0.2
6,150,533 + AO356_27000 0.45 +0.5
6,150,592 + AO356_27000 0.72 -0.9
6,150,737 - -0.4
6,150,974 + AO356_27005 0.10 +0.5
6,151,014 - AO356_27005 0.12 -1.2
6,151,177 + AO356_27005 0.21 +0.2
6,151,178 - AO356_27005 0.21 +2.2

Or see this region's nucleotide sequence