Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24695

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24685 and AO356_24690 overlap by 8 nucleotidesAO356_24690 and AO356_24695 are separated by 154 nucleotidesAO356_24695 and AO356_24700 are separated by 316 nucleotides AO356_24685: AO356_24685 - 2-dehydro-3-deoxygluconokinase, at 5,583,209 to 5,584,189 _24685 AO356_24690: AO356_24690 - AP endonuclease, at 5,584,182 to 5,584,964 _24690 AO356_24695: AO356_24695 - transcriptional regulator, at 5,585,119 to 5,586,105 _24695 AO356_24700: AO356_24700 - hypothetical protein, at 5,586,422 to 5,586,775 _24700 Position (kb) 5585 5586 5587Strain fitness (log2 ratio) -2 -1 0 1at 5584.411 kb on + strand, within AO356_24690at 5584.411 kb on + strand, within AO356_24690at 5584.412 kb on - strand, within AO356_24690at 5584.420 kb on + strand, within AO356_24690at 5584.420 kb on + strand, within AO356_24690at 5584.420 kb on + strand, within AO356_24690at 5584.770 kb on + strand, within AO356_24690at 5584.770 kb on + strand, within AO356_24690at 5584.770 kb on + strand, within AO356_24690at 5584.770 kb on + strand, within AO356_24690at 5584.771 kb on - strand, within AO356_24690at 5585.292 kb on - strand, within AO356_24695at 5585.508 kb on + strand, within AO356_24695at 5585.771 kb on + strand, within AO356_24695at 5585.772 kb on - strand, within AO356_24695at 5585.842 kb on - strand, within AO356_24695at 5585.844 kb on - strand, within AO356_24695at 5585.882 kb on - strand, within AO356_24695at 5586.160 kb on + strandat 5586.160 kb on + strandat 5586.161 kb on - strandat 5586.163 kb on + strandat 5586.164 kb on - strandat 5586.294 kb on + strandat 5586.295 kb on - strandat 5586.295 kb on - strandat 5586.350 kb on + strandat 5586.350 kb on + strandat 5586.350 kb on + strandat 5586.351 kb on - strandat 5586.351 kb on - strandat 5586.351 kb on - strandat 5586.351 kb on - strandat 5586.434 kb on + strandat 5586.434 kb on + strandat 5586.434 kb on + strandat 5586.434 kb on + strandat 5586.435 kb on - strandat 5586.435 kb on - strandat 5586.435 kb on - strandat 5586.435 kb on - strandat 5586.435 kb on - strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.438 kb on + strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.439 kb on - strandat 5586.890 kb on - strandat 5586.936 kb on + strandat 5586.936 kb on + strandat 5586.977 kb on - strandat 5587.049 kb on + strandat 5587.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,584,411 + AO356_24690 0.29 +0.1
5,584,411 + AO356_24690 0.29 +0.1
5,584,412 - AO356_24690 0.29 +0.3
5,584,420 + AO356_24690 0.30 +0.0
5,584,420 + AO356_24690 0.30 -0.2
5,584,420 + AO356_24690 0.30 +1.5
5,584,770 + AO356_24690 0.75 -0.7
5,584,770 + AO356_24690 0.75 -0.0
5,584,770 + AO356_24690 0.75 -1.0
5,584,770 + AO356_24690 0.75 -0.2
5,584,771 - AO356_24690 0.75 +0.2
5,585,292 - AO356_24695 0.18 -1.8
5,585,508 + AO356_24695 0.39 -0.7
5,585,771 + AO356_24695 0.66 -0.5
5,585,772 - AO356_24695 0.66 -0.2
5,585,842 - AO356_24695 0.73 -0.1
5,585,844 - AO356_24695 0.73 +1.0
5,585,882 - AO356_24695 0.77 +0.0
5,586,160 + -0.1
5,586,160 + -0.6
5,586,161 - +1.3
5,586,163 + -0.2
5,586,164 - -1.2
5,586,294 + +0.8
5,586,295 - +0.5
5,586,295 - +0.1
5,586,350 + +0.3
5,586,350 + +0.9
5,586,350 + -0.4
5,586,351 - +0.7
5,586,351 - +0.7
5,586,351 - +0.6
5,586,351 - -0.1
5,586,434 + -1.9
5,586,434 + +0.1
5,586,434 + -0.5
5,586,434 + +0.4
5,586,435 - -1.4
5,586,435 - -0.4
5,586,435 - +0.4
5,586,435 - +0.3
5,586,435 - -0.4
5,586,438 + +1.3
5,586,438 + -0.3
5,586,438 + -0.2
5,586,438 + +0.4
5,586,438 + -0.0
5,586,438 + +1.1
5,586,438 + +1.2
5,586,439 - +0.5
5,586,439 - +0.3
5,586,439 - +1.1
5,586,439 - +0.5
5,586,439 - +0.2
5,586,439 - +1.1
5,586,439 - +0.2
5,586,890 - +0.3
5,586,936 + +1.1
5,586,936 + -0.1
5,586,977 - -0.8
5,587,049 + +1.3
5,587,050 - -0.8

Or see this region's nucleotide sequence