Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22985

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22980 and AO356_22985 are separated by 0 nucleotidesAO356_22985 and AO356_22990 are separated by 1 nucleotides AO356_22980: AO356_22980 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,130,278 to 5,131,546 _22980 AO356_22985: AO356_22985 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data), at 5,131,547 to 5,132,605 _22985 AO356_22990: AO356_22990 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data), at 5,132,607 to 5,133,842 _22990 Position (kb) 5131 5132 5133Strain fitness (log2 ratio) -3 -2 -1 0 1at 5130.885 kb on + strand, within AO356_22980at 5130.885 kb on + strand, within AO356_22980at 5130.886 kb on - strand, within AO356_22980at 5131.032 kb on + strand, within AO356_22980at 5131.439 kb on + strandat 5131.440 kb on - strandat 5131.532 kb on - strandat 5131.602 kb on + strandat 5131.603 kb on - strandat 5131.869 kb on + strand, within AO356_22985at 5131.869 kb on + strand, within AO356_22985at 5131.870 kb on - strand, within AO356_22985at 5131.870 kb on - strand, within AO356_22985at 5131.884 kb on + strand, within AO356_22985at 5131.947 kb on + strand, within AO356_22985at 5131.947 kb on + strand, within AO356_22985at 5131.947 kb on + strand, within AO356_22985at 5131.947 kb on + strand, within AO356_22985at 5131.947 kb on + strand, within AO356_22985at 5131.948 kb on - strand, within AO356_22985at 5131.948 kb on - strand, within AO356_22985at 5131.948 kb on - strand, within AO356_22985at 5131.948 kb on - strand, within AO356_22985at 5131.948 kb on - strand, within AO356_22985at 5132.029 kb on + strand, within AO356_22985at 5132.031 kb on + strand, within AO356_22985at 5132.032 kb on - strand, within AO356_22985at 5132.190 kb on + strand, within AO356_22985at 5132.304 kb on + strand, within AO356_22985at 5132.304 kb on + strand, within AO356_22985at 5132.305 kb on - strand, within AO356_22985at 5132.305 kb on - strand, within AO356_22985at 5132.418 kb on + strand, within AO356_22985at 5132.418 kb on + strand, within AO356_22985at 5132.419 kb on - strand, within AO356_22985at 5132.584 kb on + strandat 5132.584 kb on + strandat 5132.585 kb on - strandat 5132.660 kb on - strandat 5132.660 kb on - strandat 5132.879 kb on - strand, within AO356_22990at 5132.992 kb on + strand, within AO356_22990at 5133.331 kb on + strand, within AO356_22990at 5133.331 kb on + strand, within AO356_22990at 5133.331 kb on + strand, within AO356_22990at 5133.331 kb on + strand, within AO356_22990at 5133.332 kb on - strand, within AO356_22990at 5133.442 kb on + strand, within AO356_22990at 5133.442 kb on + strand, within AO356_22990at 5133.523 kb on + strand, within AO356_22990at 5133.523 kb on + strand, within AO356_22990at 5133.523 kb on + strand, within AO356_22990at 5133.524 kb on - strand, within AO356_22990at 5133.571 kb on + strand, within AO356_22990at 5133.571 kb on + strand, within AO356_22990at 5133.572 kb on - strand, within AO356_22990at 5133.572 kb on - strand, within AO356_22990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,130,885 + AO356_22980 0.48 -2.9
5,130,885 + AO356_22980 0.48 -0.3
5,130,886 - AO356_22980 0.48 -1.2
5,131,032 + AO356_22980 0.59 -1.1
5,131,439 + -0.8
5,131,440 - -0.2
5,131,532 - -0.2
5,131,602 + -1.2
5,131,603 - -0.8
5,131,869 + AO356_22985 0.30 +0.3
5,131,869 + AO356_22985 0.30 +0.3
5,131,870 - AO356_22985 0.31 -0.7
5,131,870 - AO356_22985 0.31 -1.6
5,131,884 + AO356_22985 0.32 +0.0
5,131,947 + AO356_22985 0.38 -2.7
5,131,947 + AO356_22985 0.38 -1.9
5,131,947 + AO356_22985 0.38 -2.2
5,131,947 + AO356_22985 0.38 -1.4
5,131,947 + AO356_22985 0.38 -1.3
5,131,948 - AO356_22985 0.38 -0.3
5,131,948 - AO356_22985 0.38 -1.4
5,131,948 - AO356_22985 0.38 -1.9
5,131,948 - AO356_22985 0.38 -0.5
5,131,948 - AO356_22985 0.38 -0.7
5,132,029 + AO356_22985 0.46 -2.7
5,132,031 + AO356_22985 0.46 +0.7
5,132,032 - AO356_22985 0.46 -0.9
5,132,190 + AO356_22985 0.61 -0.6
5,132,304 + AO356_22985 0.71 -1.2
5,132,304 + AO356_22985 0.71 -1.6
5,132,305 - AO356_22985 0.72 -2.8
5,132,305 - AO356_22985 0.72 +0.3
5,132,418 + AO356_22985 0.82 -1.4
5,132,418 + AO356_22985 0.82 -1.2
5,132,419 - AO356_22985 0.82 -0.5
5,132,584 + -2.2
5,132,584 + -1.2
5,132,585 - -1.0
5,132,660 - -0.7
5,132,660 - -0.6
5,132,879 - AO356_22990 0.22 +0.3
5,132,992 + AO356_22990 0.31 -0.4
5,133,331 + AO356_22990 0.59 -0.5
5,133,331 + AO356_22990 0.59 -2.7
5,133,331 + AO356_22990 0.59 +0.4
5,133,331 + AO356_22990 0.59 -1.9
5,133,332 - AO356_22990 0.59 +0.0
5,133,442 + AO356_22990 0.68 -1.7
5,133,442 + AO356_22990 0.68 -0.6
5,133,523 + AO356_22990 0.74 -2.0
5,133,523 + AO356_22990 0.74 -1.0
5,133,523 + AO356_22990 0.74 -1.7
5,133,524 - AO356_22990 0.74 -1.7
5,133,571 + AO356_22990 0.78 -1.3
5,133,571 + AO356_22990 0.78 -1.3
5,133,572 - AO356_22990 0.78 -1.3
5,133,572 - AO356_22990 0.78 -1.7

Or see this region's nucleotide sequence