Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22980 and AO356_22985 are separated by 0 nucleotides AO356_22985 and AO356_22990 are separated by 1 nucleotides
AO356_22980: AO356_22980 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 5,130,278 to 5,131,546
_22980
AO356_22985: AO356_22985 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) , at 5,131,547 to 5,132,605
_22985
AO356_22990: AO356_22990 - branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) , at 5,132,607 to 5,133,842
_22990
Position (kb)
5131
5132
5133 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5130.885 kb on + strand, within AO356_22980 at 5130.885 kb on + strand, within AO356_22980 at 5130.886 kb on - strand, within AO356_22980 at 5131.032 kb on + strand, within AO356_22980 at 5131.439 kb on + strand at 5131.440 kb on - strand at 5131.532 kb on - strand at 5131.602 kb on + strand at 5131.603 kb on - strand at 5131.869 kb on + strand, within AO356_22985 at 5131.869 kb on + strand, within AO356_22985 at 5131.870 kb on - strand, within AO356_22985 at 5131.870 kb on - strand, within AO356_22985 at 5131.884 kb on + strand, within AO356_22985 at 5131.947 kb on + strand, within AO356_22985 at 5131.947 kb on + strand, within AO356_22985 at 5131.947 kb on + strand, within AO356_22985 at 5131.947 kb on + strand, within AO356_22985 at 5131.947 kb on + strand, within AO356_22985 at 5131.948 kb on - strand, within AO356_22985 at 5131.948 kb on - strand, within AO356_22985 at 5131.948 kb on - strand, within AO356_22985 at 5131.948 kb on - strand, within AO356_22985 at 5131.948 kb on - strand, within AO356_22985 at 5132.029 kb on + strand, within AO356_22985 at 5132.031 kb on + strand, within AO356_22985 at 5132.032 kb on - strand, within AO356_22985 at 5132.190 kb on + strand, within AO356_22985 at 5132.304 kb on + strand, within AO356_22985 at 5132.304 kb on + strand, within AO356_22985 at 5132.305 kb on - strand, within AO356_22985 at 5132.305 kb on - strand, within AO356_22985 at 5132.418 kb on + strand, within AO356_22985 at 5132.418 kb on + strand, within AO356_22985 at 5132.419 kb on - strand, within AO356_22985 at 5132.584 kb on + strand at 5132.584 kb on + strand at 5132.585 kb on - strand at 5132.660 kb on - strand at 5132.660 kb on - strand at 5132.879 kb on - strand, within AO356_22990 at 5132.992 kb on + strand, within AO356_22990 at 5133.331 kb on + strand, within AO356_22990 at 5133.331 kb on + strand, within AO356_22990 at 5133.331 kb on + strand, within AO356_22990 at 5133.331 kb on + strand, within AO356_22990 at 5133.332 kb on - strand, within AO356_22990 at 5133.442 kb on + strand, within AO356_22990 at 5133.442 kb on + strand, within AO356_22990 at 5133.523 kb on + strand, within AO356_22990 at 5133.523 kb on + strand, within AO356_22990 at 5133.523 kb on + strand, within AO356_22990 at 5133.524 kb on - strand, within AO356_22990 at 5133.571 kb on + strand, within AO356_22990 at 5133.571 kb on + strand, within AO356_22990 at 5133.572 kb on - strand, within AO356_22990 at 5133.572 kb on - strand, within AO356_22990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 5,130,885 + AO356_22980 0.48 -2.9 5,130,885 + AO356_22980 0.48 -0.3 5,130,886 - AO356_22980 0.48 -1.2 5,131,032 + AO356_22980 0.59 -1.1 5,131,439 + -0.8 5,131,440 - -0.2 5,131,532 - -0.2 5,131,602 + -1.2 5,131,603 - -0.8 5,131,869 + AO356_22985 0.30 +0.3 5,131,869 + AO356_22985 0.30 +0.3 5,131,870 - AO356_22985 0.31 -0.7 5,131,870 - AO356_22985 0.31 -1.6 5,131,884 + AO356_22985 0.32 +0.0 5,131,947 + AO356_22985 0.38 -2.7 5,131,947 + AO356_22985 0.38 -1.9 5,131,947 + AO356_22985 0.38 -2.2 5,131,947 + AO356_22985 0.38 -1.4 5,131,947 + AO356_22985 0.38 -1.3 5,131,948 - AO356_22985 0.38 -0.3 5,131,948 - AO356_22985 0.38 -1.4 5,131,948 - AO356_22985 0.38 -1.9 5,131,948 - AO356_22985 0.38 -0.5 5,131,948 - AO356_22985 0.38 -0.7 5,132,029 + AO356_22985 0.46 -2.7 5,132,031 + AO356_22985 0.46 +0.7 5,132,032 - AO356_22985 0.46 -0.9 5,132,190 + AO356_22985 0.61 -0.6 5,132,304 + AO356_22985 0.71 -1.2 5,132,304 + AO356_22985 0.71 -1.6 5,132,305 - AO356_22985 0.72 -2.8 5,132,305 - AO356_22985 0.72 +0.3 5,132,418 + AO356_22985 0.82 -1.4 5,132,418 + AO356_22985 0.82 -1.2 5,132,419 - AO356_22985 0.82 -0.5 5,132,584 + -2.2 5,132,584 + -1.2 5,132,585 - -1.0 5,132,660 - -0.7 5,132,660 - -0.6 5,132,879 - AO356_22990 0.22 +0.3 5,132,992 + AO356_22990 0.31 -0.4 5,133,331 + AO356_22990 0.59 -0.5 5,133,331 + AO356_22990 0.59 -2.7 5,133,331 + AO356_22990 0.59 +0.4 5,133,331 + AO356_22990 0.59 -1.9 5,133,332 - AO356_22990 0.59 +0.0 5,133,442 + AO356_22990 0.68 -1.7 5,133,442 + AO356_22990 0.68 -0.6 5,133,523 + AO356_22990 0.74 -2.0 5,133,523 + AO356_22990 0.74 -1.0 5,133,523 + AO356_22990 0.74 -1.7 5,133,524 - AO356_22990 0.74 -1.7 5,133,571 + AO356_22990 0.78 -1.3 5,133,571 + AO356_22990 0.78 -1.3 5,133,572 - AO356_22990 0.78 -1.3 5,133,572 - AO356_22990 0.78 -1.7
Or see this region's nucleotide sequence