Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22350

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22345 and AO356_22350 are separated by 1 nucleotidesAO356_22350 and AO356_22355 are separated by 176 nucleotides AO356_22345: AO356_22345 - potassium transporter KefC, at 4,995,646 to 4,997,472 _22345 AO356_22350: AO356_22350 - potassium transporter KefF, at 4,997,474 to 4,997,995 _22350 AO356_22355: AO356_22355 - histidine kinase, at 4,998,172 to 4,999,518 _22355 Position (kb) 4997 4998Strain fitness (log2 ratio) -2 -1 0 1at 4997.324 kb on + strandat 4997.368 kb on + strandat 4997.369 kb on - strandat 4997.369 kb on - strandat 4997.373 kb on - strandat 4997.438 kb on + strandat 4997.438 kb on + strandat 4997.438 kb on + strandat 4997.438 kb on + strandat 4997.508 kb on + strandat 4997.508 kb on + strandat 4997.508 kb on + strandat 4997.509 kb on - strandat 4997.509 kb on - strandat 4997.509 kb on - strandat 4997.550 kb on + strand, within AO356_22350at 4997.595 kb on + strand, within AO356_22350at 4997.595 kb on + strand, within AO356_22350at 4997.595 kb on + strand, within AO356_22350at 4997.595 kb on + strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.596 kb on - strand, within AO356_22350at 4997.733 kb on + strand, within AO356_22350at 4997.793 kb on + strand, within AO356_22350at 4997.793 kb on + strand, within AO356_22350at 4997.799 kb on + strand, within AO356_22350at 4997.799 kb on + strand, within AO356_22350at 4997.799 kb on + strand, within AO356_22350at 4997.799 kb on + strand, within AO356_22350at 4997.800 kb on - strand, within AO356_22350at 4997.889 kb on + strand, within AO356_22350at 4997.890 kb on - strand, within AO356_22350at 4997.890 kb on - strand, within AO356_22350at 4997.900 kb on + strand, within AO356_22350at 4997.900 kb on + strand, within AO356_22350at 4997.900 kb on + strand, within AO356_22350at 4997.900 kb on + strand, within AO356_22350at 4997.901 kb on - strand, within AO356_22350at 4997.901 kb on - strand, within AO356_22350at 4997.901 kb on - strand, within AO356_22350at 4997.901 kb on - strand, within AO356_22350at 4997.901 kb on - strand, within AO356_22350at 4997.979 kb on + strandat 4997.987 kb on - strandat 4998.069 kb on + strandat 4998.070 kb on - strandat 4998.353 kb on + strand, within AO356_22355at 4998.443 kb on + strand, within AO356_22355at 4998.506 kb on + strand, within AO356_22355at 4998.506 kb on + strand, within AO356_22355at 4998.506 kb on + strand, within AO356_22355at 4998.506 kb on + strand, within AO356_22355at 4998.506 kb on + strand, within AO356_22355at 4998.507 kb on - strand, within AO356_22355at 4998.507 kb on - strand, within AO356_22355at 4998.507 kb on - strand, within AO356_22355at 4998.507 kb on - strand, within AO356_22355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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4,997,324 + +1.3
4,997,368 + -1.0
4,997,369 - +0.6
4,997,369 - -0.0
4,997,373 - +0.6
4,997,438 + -0.1
4,997,438 + -0.8
4,997,438 + -0.2
4,997,438 + +1.6
4,997,508 + +0.0
4,997,508 + +0.1
4,997,508 + -2.2
4,997,509 - +0.5
4,997,509 - +0.2
4,997,509 - -0.2
4,997,550 + AO356_22350 0.15 +0.3
4,997,595 + AO356_22350 0.23 +0.4
4,997,595 + AO356_22350 0.23 -0.2
4,997,595 + AO356_22350 0.23 +0.8
4,997,595 + AO356_22350 0.23 -0.6
4,997,596 - AO356_22350 0.23 -1.4
4,997,596 - AO356_22350 0.23 -0.0
4,997,596 - AO356_22350 0.23 +1.0
4,997,596 - AO356_22350 0.23 +0.1
4,997,596 - AO356_22350 0.23 +0.2
4,997,596 - AO356_22350 0.23 -1.2
4,997,733 + AO356_22350 0.50 +0.5
4,997,793 + AO356_22350 0.61 -0.5
4,997,793 + AO356_22350 0.61 -0.7
4,997,799 + AO356_22350 0.62 -0.2
4,997,799 + AO356_22350 0.62 +1.7
4,997,799 + AO356_22350 0.62 -0.4
4,997,799 + AO356_22350 0.62 +0.3
4,997,800 - AO356_22350 0.62 +0.0
4,997,889 + AO356_22350 0.80 -0.2
4,997,890 - AO356_22350 0.80 -0.5
4,997,890 - AO356_22350 0.80 +1.3
4,997,900 + AO356_22350 0.82 -0.0
4,997,900 + AO356_22350 0.82 +0.3
4,997,900 + AO356_22350 0.82 +0.3
4,997,900 + AO356_22350 0.82 -0.2
4,997,901 - AO356_22350 0.82 +0.9
4,997,901 - AO356_22350 0.82 +0.4
4,997,901 - AO356_22350 0.82 +0.6
4,997,901 - AO356_22350 0.82 +0.1
4,997,901 - AO356_22350 0.82 +0.6
4,997,979 + +0.5
4,997,987 - +0.6
4,998,069 + +0.2
4,998,070 - -0.1
4,998,353 + AO356_22355 0.13 +0.3
4,998,443 + AO356_22355 0.20 +0.7
4,998,506 + AO356_22355 0.25 +0.9
4,998,506 + AO356_22355 0.25 -0.6
4,998,506 + AO356_22355 0.25 +0.9
4,998,506 + AO356_22355 0.25 +0.7
4,998,506 + AO356_22355 0.25 +1.3
4,998,507 - AO356_22355 0.25 +0.0
4,998,507 - AO356_22355 0.25 +0.9
4,998,507 - AO356_22355 0.25 +0.3
4,998,507 - AO356_22355 0.25 +0.5

Or see this region's nucleotide sequence